CF836274

Overview
NameCF836274
Unique NameCF836274
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length532
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7326 contig Csv1_Contig7326:10..541. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB_VIBFM (Tryptophan synthase beta chain OS=Vibrio fischeri (strain MJ11) GN=trpB PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.301e-11
Identity = 37/85 (43.53%), Postives = 48/85 (56.47%), Query Frame = 2 
Query:  278 VPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 532
            VP+ L+ AL +LE A     +D DF+ E   +L++Y GR T L     LT+      G    +YLKREDL H GAHK N  +GQA
Sbjct:   16 VPQILVPALEQLEQAFIDAQEDPDFRAEFMTLLQEYAGRPTALTLCRNLTK------GTKTKLYLKREDLLHGGAHKTNQVLGQA 94
[Close]
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB_SHEPW (Tryptophan synthase beta chain OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=trpB PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.301e-11
Identity = 39/85 (45.88%), Postives = 50/85 (58.82%), Query Frame = 2 
Query:  278 VPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 532
            VP+ LM AL +LE+A  +   D  FQ+E + +L++Y GR T L     L+     PN     IYLKREDL H GAHK N  +GQA
Sbjct:   16 VPQILMPALKQLETAFIEAQQDEAFQKEFTDLLKNYAGRPTALTLTRNLS-----PNPLA-KIYLKREDLLHGGAHKTNQVLGQA 94
[Close]
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB_KLEP7 (Tryptophan synthase beta chain OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=trpB PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.301e-11
Identity = 39/85 (45.88%), Postives = 47/85 (55.29%), Query Frame = 2 
Query:  278 VPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 532
            VP+ LM AL +LE A      D  FQ E + +L++Y GR T L     LTE      G    +YLKREDL H GAHK N  +GQA
Sbjct:   17 VPQILMPALRQLEEAFVSAQKDPAFQAEFTDLLKNYAGRPTALTKCRNLTE------GTRTTLYLKREDLLHGGAHKTNQVLGQA 95
[Close]
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB_KLEP3 (Tryptophan synthase beta chain OS=Klebsiella pneumoniae (strain 342) GN=trpB PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.301e-11
Identity = 39/85 (45.88%), Postives = 47/85 (55.29%), Query Frame = 2 
Query:  278 VPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 532
            VP+ LM AL +LE A      D  FQ E + +L++Y GR T L     LTE      G    +YLKREDL H GAHK N  +GQA
Sbjct:   17 VPQILMPALRQLEEAFVSAQKDPAFQAEFTDLLKNYAGRPTALTKCRNLTE------GTRTTLYLKREDLLHGGAHKTNQVLGQA 95
[Close]
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB_ENT38 (Tryptophan synthase beta chain OS=Enterobacter sp. (strain 638) GN=trpB PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.301e-11
Identity = 39/85 (45.88%), Postives = 47/85 (55.29%), Query Frame = 2 
Query:  278 VPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 532
            VP+ LM AL +LE A      D  FQ E + +L++Y GR T L     LTE      G    +YLKREDL H GAHK N  +GQA
Sbjct:   17 VPQILMPALRQLEEAFVSAQKDPAFQAEFTDLLKNYAGRPTALTKCRNLTE------GTKTTLYLKREDLLHGGAHKTNQVLGQA 95
[Close]
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB_EDWI9 (Tryptophan synthase beta chain OS=Edwardsiella ictaluri (strain 93-146) GN=trpB PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.301e-11
Identity = 37/85 (43.53%), Postives = 48/85 (56.47%), Query Frame = 2 
Query:  278 VPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 532
            VP+ L+ AL++LE+A     DD  FQ + + +L +Y GR T L     LT       G    +YLKREDL H GAHK N  +GQA
Sbjct:   16 VPQILIPALNQLEAAFVDARDDPTFQTQFNDLLHNYAGRPTALTLCRNLTA------GTRTRLYLKREDLLHGGAHKTNQVLGQA 94
[Close]
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB2_COREF (Tryptophan synthase beta chain 2 OS=Corynebacterium efficiens GN=trpB2 PE=3 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 8.301e-11
Identity = 38/85 (44.71%), Postives = 48/85 (56.47%), Query Frame = 2 
Query:  278 VPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 532
            VPE L+ AL ELE A  +  +D  FQ+EL  +  +Y+GR TP+     L         G   I+LKREDL H GAHK N  +GQA
Sbjct:   25 VPEVLLPALDELERAYVEALEDPTFQQELDDLYTNYLGRPTPITECANLP--LEGQGRGTARIFLKREDLVHGGAHKGNQTIGQA 107
[Close]
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB1_COREF (Tryptophan synthase beta chain 1 OS=Corynebacterium efficiens GN=trpB1 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.301e-11
Identity = 38/85 (44.71%), Postives = 49/85 (57.65%), Query Frame = 2 
Query:  278 VPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 532
            V E+L+ AL +LE A     +  +F++EL+  LRDY+GR TPL     L         G   I+LKREDL H GAHK N  +GQA
Sbjct:   25 VAESLLPALDQLEKAFVDATNHPEFRQELAAYLRDYLGRPTPLTECSNLP--LPGQGRGYARIFLKREDLVHGGAHKTNQVIGQA 107
The following BLAST results are available for this feature:
BLAST of CF836274 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 318
Match NameE-valueIdentityDescription
TRPB_VIBFM8.301e-1143.53Tryptophan synthase beta chain OS=Vibrio fischeri ... [more]
TRPB_SHEPW8.301e-1145.88Tryptophan synthase beta chain OS=Shewanella piezo... [more]
TRPB_KLEP78.301e-1145.88Tryptophan synthase beta chain OS=Klebsiella pneum... [more]
TRPB_KLEP38.301e-1145.88Tryptophan synthase beta chain OS=Klebsiella pneum... [more]
TRPB_ENT388.301e-1145.88Tryptophan synthase beta chain OS=Enterobacter sp.... [more]
TRPB_EDWI98.301e-1143.53Tryptophan synthase beta chain OS=Edwardsiella ict... [more]
TRPB2_COREF8.301e-1144.71Tryptophan synthase beta chain 2 OS=Corynebacteriu... [more]
TRPB1_COREF8.301e-1144.71Tryptophan synthase beta chain 1 OS=Corynebacteriu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02L07_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02L07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836274 ID=CF836274; Name=CF836274; organism=Citrus sinensis; type=EST; length=532bp
TCCATATCCCTCCTTTAAAAAACCTCTAATGGCCGTCGCCACAGGTTCAA
GCTTCTGTTGCAAACTCGCAAAGCCCTGCGCTTTCACGACATCGAATTCC
TCGCAGTCGCCCTTCAAGTTGAAGAAATTTACAGCCAGCCCAGCCAAATC
GACGTCCATTCGCTGTACCATTGCGAGAGACCCGGTCGTTCCCATGGAGG
CCAAGAAGGAGTCCGACCCTGCCCCGTGGCAGAGACCTGATGTGTTTGGC
CGGTTCGGTAGGTTCGGCGGGAAGTTCGTCCCTGAGACGCTAATGTACGC
GCTTTCTGAGCTGGAATCCGCACTTCATAAACTCGCCGACGACCGAGATT
TTCAGGAGGAACTTTCGGGGATTTTGAGAGACTATGTCGGCAGGGAGACT
CCGCTTTATTTTGCTGAGCGGCTTACGGAGCACTACAGGCGGCCTAACGG
GGGAGGGCCTCACATATACCTCAAGAGGGAGGACCTCAACCACACTGGGG
CCCACAAGATCAACAATGCTGTTGGCCAAGCT
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