CF836274

Overview
NameCF836274
Unique NameCF836274
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length532
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB_LISW6 (Tryptophan synthase beta chain OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=trpB PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 4.243e-23
Identity = 57/102 (55.88%), Postives = 66/102 (64.71%), Query Frame = 2
Query:  227 WQRPDVXXXXXXXXXXXVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 532
            +Q PD            VPETLM A+ EL+ A      D  FQ+EL+  L++YVGRETPLYFAE+LT H      GG  IYLKREDLNHTGAHKINN +GQA
Sbjct:    3 YQAPDENGFYGKFGGRFVPETLMKAVIELDEAYRASKTDSAFQKELNYYLKEYVGRETPLYFAEQLTAH-----AGGAKIYLKREDLNHTGAHKINNTIGQA 99          
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB_STRMU (Tryptophan synthase beta chain OS=Streptococcus mutans GN=trpB PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 7.238e-23
Identity = 53/84 (63.10%), Postives = 63/84 (75.00%), Query Frame = 2
Query:  278 VPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQ 529
            +PETLM A+ EL+ A  +   D  F EEL  +L+DYVGRETPLYFA+RLT++      GG  IYLKREDLNHTGAHKINNA+GQ
Sbjct:   20 IPETLMTAVIELDEAYREAKADPSFHEELDALLKDYVGRETPLYFAKRLTDYI-----GGAKIYLKREDLNHTGAHKINNALGQ 98          
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB_PROMS (Tryptophan synthase beta chain OS=Prochlorococcus marinus (strain AS9601) GN=trpB PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 7.238e-23
Identity = 56/85 (65.88%), Postives = 64/85 (75.29%), Query Frame = 2
Query:  278 VPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 532
            VPETLM AL ELE A      D+ F EEL+ +L+ YVGRETPLY A+RLTEHY+      P I+LKREDLNHTGAHKINNA+GQA
Sbjct:   34 VPETLMPALFELEDAASNAWKDKLFVEELNHLLKTYVGRETPLYEAKRLTEHYKNKQ-ATPRIWLKREDLNHTGAHKINNALGQA 117          
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB_PROM0 (Tryptophan synthase beta chain OS=Prochlorococcus marinus (strain MIT 9301) GN=trpB PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 7.238e-23
Identity = 56/85 (65.88%), Postives = 65/85 (76.47%), Query Frame = 2
Query:  278 VPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 532
            VPETLM AL ELE+A      D+ F EEL+ +L+ YVGRETPLY A+RLTEHY+      P I+LKREDLNHTGAHKINNA+GQA
Sbjct:   34 VPETLMPALFELETAASNAWKDKLFVEELNHLLKTYVGRETPLYEAKRLTEHYKTKQ-ATPRIWLKREDLNHTGAHKINNALGQA 117          
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB_BACC7 (Tryptophan synthase beta chain OS=Bacillus cereus (strain AH187) GN=trpB PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 7.238e-23
Identity = 53/85 (62.35%), Postives = 64/85 (75.29%), Query Frame = 2
Query:  278 VPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 532
            VPETLM ++ ELE A  +  +D +FQ+EL+  L+ YVGRETPLYFAE +TE+      GG  IYLKREDLNHTGAHKINN +GQA
Sbjct:   20 VPETLMQSVLELEEAYKEAMEDEEFQKELNHYLKTYVGRETPLYFAENMTEYC-----GGAKIYLKREDLNHTGAHKINNTIGQA 99          
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB_PROMA (Tryptophan synthase beta chain OS=Prochlorococcus marinus GN=trpB PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.235e-22
Identity = 57/100 (57.00%), Postives = 66/100 (66.00%), Query Frame = 2
Query:  233 RPDVXXXXXXXXXXXVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 532
            RP             VPETL+ AL+ELE A      D  F +EL+ +L+ YVGRETPLY A RLT+HY R    GP I+LKREDLNHTGAHKINNA+GQA
Sbjct:   19 RPSAHGRFGRFGGQYVPETLIPALTELEQAAATAWKDESFTKELTQLLKTYVGRETPLYEATRLTKHYER-GTVGPRIWLKREDLNHTGAHKINNALGQA 117          
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB_LISIN (Tryptophan synthase beta chain OS=Listeria innocua GN=trpB PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.235e-22
Identity = 56/102 (54.90%), Postives = 66/102 (64.71%), Query Frame = 2
Query:  227 WQRPDVXXXXXXXXXXXVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 532
            +Q PD            VPETLM A+ EL+ A      D  FQ+EL+  L++YVGRETPLYFAE+LT +      GG  IYLKREDLNHTGAHKINN +GQA
Sbjct:    3 YQAPDENGFYGKFGGRFVPETLMKAVKELDEAYRASKTDAAFQKELNYYLKEYVGRETPLYFAEQLTAY-----AGGAKIYLKREDLNHTGAHKINNTIGQA 99          
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB_BACHK (Tryptophan synthase beta chain OS=Bacillus thuringiensis subsp. konkukian GN=trpB PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.106e-22
Identity = 53/85 (62.35%), Postives = 63/85 (74.12%), Query Frame = 2
Query:  278 VPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 532
            VPETLM ++ ELE A  +  +D  FQ+EL+  L+ YVGRETPLYFAE +TE+      GG  IYLKREDLNHTGAHKINN +GQA
Sbjct:   20 VPETLMQSVLELEEAYKEAMEDEAFQKELNHYLKTYVGRETPLYFAENMTEYC-----GGAKIYLKREDLNHTGAHKINNTIGQA 99          
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB_BACCZ (Tryptophan synthase beta chain OS=Bacillus cereus (strain ZK / E33L) GN=trpB PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.106e-22
Identity = 53/85 (62.35%), Postives = 63/85 (74.12%), Query Frame = 2
Query:  278 VPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 532
            VPETLM ++ ELE A  +  +D  FQ+EL+  L+ YVGRETPLYFAE +TE+      GG  IYLKREDLNHTGAHKINN +GQA
Sbjct:   20 VPETLMQSVLELEEAYKEAMEDEAFQKELNHYLKTYVGRETPLYFAENMTEYC-----GGAKIYLKREDLNHTGAHKINNTIGQA 99          
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB_BACCQ (Tryptophan synthase beta chain OS=Bacillus cereus (strain Q1) GN=trpB PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.106e-22
Identity = 52/85 (61.18%), Postives = 64/85 (75.29%), Query Frame = 2
Query:  278 VPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 532
            VPETLM ++ ELE A  +  +D +FQ+EL+  L+ YVGRETPLYFAE +T++      GG  IYLKREDLNHTGAHKINN +GQA
Sbjct:   20 VPETLMQSVLELEEAYKEAMEDEEFQKELNHYLKTYVGRETPLYFAENMTKYC-----GGAKIYLKREDLNHTGAHKINNTIGQA 99          
The following BLAST results are available for this feature:
BLAST of CF836274 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 318
Match NameE-valueIdentityDescription
TRPB_LISW64.243e-2355.88Tryptophan synthase beta chain OS=Listeria welshim... [more]
TRPB_STRMU7.238e-2363.10Tryptophan synthase beta chain OS=Streptococcus mu... [more]
TRPB_PROMS7.238e-2365.88Tryptophan synthase beta chain OS=Prochlorococcus ... [more]
TRPB_PROM07.238e-2365.88Tryptophan synthase beta chain OS=Prochlorococcus ... [more]
TRPB_BACC77.238e-2362.35Tryptophan synthase beta chain OS=Bacillus cereus ... [more]
TRPB_PROMA1.235e-2257.00Tryptophan synthase beta chain OS=Prochlorococcus ... [more]
TRPB_LISIN1.235e-2254.90Tryptophan synthase beta chain OS=Listeria innocua... [more]
TRPB_BACHK2.106e-2262.35Tryptophan synthase beta chain OS=Bacillus thuring... [more]
TRPB_BACCZ2.106e-2262.35Tryptophan synthase beta chain OS=Bacillus cereus ... [more]
TRPB_BACCQ2.106e-2261.18Tryptophan synthase beta chain OS=Bacillus cereus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02L07_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02L07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836274 ID=CF836274; Name=CF836274; organism=Citrus sinensis; type=EST; length=532bp
TCCATATCCCTCCTTTAAAAAACCTCTAATGGCCGTCGCCACAGGTTCAA
GCTTCTGTTGCAAACTCGCAAAGCCCTGCGCTTTCACGACATCGAATTCC
TCGCAGTCGCCCTTCAAGTTGAAGAAATTTACAGCCAGCCCAGCCAAATC
GACGTCCATTCGCTGTACCATTGCGAGAGACCCGGTCGTTCCCATGGAGG
CCAAGAAGGAGTCCGACCCTGCCCCGTGGCAGAGACCTGATGTGTTTGGC
CGGTTCGGTAGGTTCGGCGGGAAGTTCGTCCCTGAGACGCTAATGTACGC
GCTTTCTGAGCTGGAATCCGCACTTCATAAACTCGCCGACGACCGAGATT
TTCAGGAGGAACTTTCGGGGATTTTGAGAGACTATGTCGGCAGGGAGACT
CCGCTTTATTTTGCTGAGCGGCTTACGGAGCACTACAGGCGGCCTAACGG
GGGAGGGCCTCACATATACCTCAAGAGGGAGGACCTCAACCACACTGGGG
CCCACAAGATCAACAATGCTGTTGGCCAAGCT
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