CF836274

Overview
NameCF836274
Unique NameCF836274
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length532
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7326 contig Csv1_Contig7326:10..541. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB_PROMP (Tryptophan synthase beta chain OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=trpB PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.365e-21
Identity = 54/85 (63.53%), Postives = 62/85 (72.94%), Query Frame = 2
Query:  278 VPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 532
            VPETLM AL ELE A      D+ F  EL+ +L+ YVGRETPLY A+RLTEHY+        I+LKREDLNHTGAHKINNA+GQA
Sbjct:   33 VPETLMPALFELEEAASDAWKDKQFVNELNHLLKTYVGRETPLYEAKRLTEHYQTKTSTS-RIWLKREDLNHTGAHKINNALGQA 116          
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB_PROM9 (Tryptophan synthase beta chain OS=Prochlorococcus marinus (strain MIT 9312) GN=trpB PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.365e-21
Identity = 54/85 (63.53%), Postives = 65/85 (76.47%), Query Frame = 2
Query:  278 VPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 532
            VPETLM AL ELE+A      D+ F +EL+ +L+ YVGRETPLY A+RLTEHY+  +     I+LKREDLNHTGAHKINNA+GQA
Sbjct:   34 VPETLMPALFELETAASNAWKDKLFVKELNHLLKTYVGRETPLYEAKRLTEHYKTKH-ATTRIWLKREDLNHTGAHKINNALGQA 117          
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB_BACWK (Tryptophan synthase beta chain OS=Bacillus weihenstephanensis (strain KBAB4) GN=trpB PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.365e-21
Identity = 52/85 (61.18%), Postives = 62/85 (72.94%), Query Frame = 2
Query:  278 VPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 532
            VPETLM ++ ELE A  +   D  FQ+EL+  L+ YVGRETPLYFAE +T++      GG  IYLKREDLNHTGAHKINN +GQA
Sbjct:   20 VPETLMQSVLELEEAYKEAMQDEAFQKELNHYLQTYVGRETPLYFAENMTKYC-----GGAKIYLKREDLNHTGAHKINNTIGQA 99          
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB_BACC1 (Tryptophan synthase beta chain OS=Bacillus cereus (strain ATCC 10987) GN=trpB PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.365e-21
Identity = 51/85 (60.00%), Postives = 63/85 (74.12%), Query Frame = 2
Query:  278 VPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 532
            VPETLM ++ ELE A  +  +D  FQ+EL+  L+ YVGRETPLY+AE +T++      GG  IYLKREDLNHTGAHKINN +GQA
Sbjct:   20 VPETLMQSVLELEEAYKEAMEDEAFQKELNHYLKTYVGRETPLYYAENMTKYC-----GGAKIYLKREDLNHTGAHKINNTIGQA 99          
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB_PROM5 (Tryptophan synthase beta chain OS=Prochlorococcus marinus (strain MIT 9515) GN=trpB PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.783e-21
Identity = 54/85 (63.53%), Postives = 63/85 (74.12%), Query Frame = 2
Query:  278 VPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 532
            VPETLM AL ELE A      D+ F +EL+ +L+ YVGRETPLY A+RLTEHY+        I+LKREDLNHTGAHKINNA+GQA
Sbjct:   34 VPETLMPALFELEKAASDAWKDKQFVDELNHLLKTYVGRETPLYEAKRLTEHYQTKTCTS-RIWLKREDLNHTGAHKINNALGQA 117          
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB_OCEIH (Tryptophan synthase beta chain OS=Oceanobacillus iheyensis GN=trpB PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.783e-21
Identity = 52/85 (61.18%), Postives = 58/85 (68.24%), Query Frame = 2
Query:  278 VPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 532
            VPE LM A+ ELE A      D  F EEL   L +Y+GRETPLY A++LTEH      GG  IYLKREDLNHTGAHKINN +GQA
Sbjct:   21 VPELLMPAVLELEKAYEDALKDESFNEELQTYLTEYIGRETPLYHAKKLTEH-----AGGAQIYLKREDLNHTGAHKINNTIGQA 100          
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB_PROM2 (Tryptophan synthase beta chain OS=Prochlorococcus marinus (strain MIT 9215) GN=trpB PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.328e-21
Identity = 54/85 (63.53%), Postives = 65/85 (76.47%), Query Frame = 2
Query:  278 VPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 532
            VPETLM AL ELE+A      D+ F +EL+ +L+ YVGRETPLY A+RLTE+Y+      P I+LKREDLNHTGAHKINNA+GQA
Sbjct:   34 VPETLMPALFELETAASNAWKDKLFVKELNHLLKTYVGRETPLYEAKRLTEYYKTKK-AIPKIWLKREDLNHTGAHKINNALGQA 117          
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB_LACLA (Tryptophan synthase beta chain OS=Lactococcus lactis subsp. lactis GN=trpB PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.328e-21
Identity = 53/84 (63.10%), Postives = 61/84 (72.62%), Query Frame = 2
Query:  278 VPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQ 529
            VPETLM A+ +LE A      D  FQ EL  +L+DYVGRE PLY+A+RLTE+      GG  IYLKREDLNHTGAHKINNA+GQ
Sbjct:   20 VPETLMTAVKQLEEAYVDSKKDPLFQAELKELLKDYVGRENPLYYAKRLTEY-----AGGAKIYLKREDLNHTGAHKINNALGQ 98          
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB_EXIS2 (Tryptophan synthase beta chain OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=trpB PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.328e-21
Identity = 51/102 (50.00%), Postives = 66/102 (64.71%), Query Frame = 2
Query:  227 WQRPDVXXXXXXXXXXXVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 532
            + +PD            +PETLM A+ ELE A  ++ +D  F+E ++ +L +YVGR+TPLY+AE LT        GG  IYLKREDLNHTGAHKINN +GQA
Sbjct:    4 YSQPDALGQYGIYGGRYIPETLMQAVLELEQAYAEVKEDPAFRERMNDLLENYVGRQTPLYYAEHLTRTI-----GGAKIYLKREDLNHTGAHKINNTIGQA 100          
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB_BACCR (Tryptophan synthase beta chain OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=trpB PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.041e-21
Identity = 50/85 (58.82%), Postives = 62/85 (72.94%), Query Frame = 2
Query:  278 VPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 532
            VPETLM ++ ELE A  +   D  FQ+EL+  L+ Y+GRETPLY+AE +T++      GG  IYLKREDLNHTGAHKINN +GQA
Sbjct:   20 VPETLMQSVLELEEAYKEAMQDEAFQKELNHYLKTYIGRETPLYYAENMTKYC-----GGAKIYLKREDLNHTGAHKINNTIGQA 99          
The following BLAST results are available for this feature:
BLAST of CF836274 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 318
Match NameE-valueIdentityDescription
TRPB_PROMP1.365e-2163.53Tryptophan synthase beta chain OS=Prochlorococcus ... [more]
TRPB_PROM91.365e-2163.53Tryptophan synthase beta chain OS=Prochlorococcus ... [more]
TRPB_BACWK1.365e-2161.18Tryptophan synthase beta chain OS=Bacillus weihens... [more]
TRPB_BACC11.365e-2160.00Tryptophan synthase beta chain OS=Bacillus cereus ... [more]
TRPB_PROM51.783e-2163.53Tryptophan synthase beta chain OS=Prochlorococcus ... [more]
TRPB_OCEIH1.783e-2161.18Tryptophan synthase beta chain OS=Oceanobacillus i... [more]
TRPB_PROM22.328e-2163.53Tryptophan synthase beta chain OS=Prochlorococcus ... [more]
TRPB_LACLA2.328e-2163.10Tryptophan synthase beta chain OS=Lactococcus lact... [more]
TRPB_EXIS22.328e-2150.00Tryptophan synthase beta chain OS=Exiguobacterium ... [more]
TRPB_BACCR3.041e-2158.82Tryptophan synthase beta chain OS=Bacillus cereus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02L07_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02L07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836274 ID=CF836274; Name=CF836274; organism=Citrus sinensis; type=EST; length=532bp
TCCATATCCCTCCTTTAAAAAACCTCTAATGGCCGTCGCCACAGGTTCAA
GCTTCTGTTGCAAACTCGCAAAGCCCTGCGCTTTCACGACATCGAATTCC
TCGCAGTCGCCCTTCAAGTTGAAGAAATTTACAGCCAGCCCAGCCAAATC
GACGTCCATTCGCTGTACCATTGCGAGAGACCCGGTCGTTCCCATGGAGG
CCAAGAAGGAGTCCGACCCTGCCCCGTGGCAGAGACCTGATGTGTTTGGC
CGGTTCGGTAGGTTCGGCGGGAAGTTCGTCCCTGAGACGCTAATGTACGC
GCTTTCTGAGCTGGAATCCGCACTTCATAAACTCGCCGACGACCGAGATT
TTCAGGAGGAACTTTCGGGGATTTTGAGAGACTATGTCGGCAGGGAGACT
CCGCTTTATTTTGCTGAGCGGCTTACGGAGCACTACAGGCGGCCTAACGG
GGGAGGGCCTCACATATACCTCAAGAGGGAGGACCTCAACCACACTGGGG
CCCACAAGATCAACAATGCTGTTGGCCAAGCT
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