CF836274

Overview
NameCF836274
Unique NameCF836274
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length532
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7326 contig Csv1_Contig7326:10..541. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB_RHOPS (Tryptophan synthase beta chain OS=Rhodopseudomonas palustris (strain BisB5) GN=trpB PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 8.848e-21
Identity = 50/84 (59.52%), Postives = 59/84 (70.24%), Query Frame = 2
Query:  278 VPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQ 529
            V ETLM  + ELE A  +  DD  F+ E+ G L+ YVGR +PLYFAERLTEH+     GG  IY KREDLNHTGAHK+NN +GQ
Sbjct:   27 VAETLMPLILELEKAYAEAKDDPAFRTEMDGYLKHYVGRPSPLYFAERLTEHF-----GGAKIYFKREDLNHTGAHKVNNVLGQ 105          
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB_PSEAE (Tryptophan synthase beta chain OS=Pseudomonas aeruginosa GN=trpB PE=3 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 8.848e-21
Identity = 54/98 (55.10%), Postives = 60/98 (61.22%), Query Frame = 2
Query:  236 PDVXXXXXXXXXXXVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQ 529
            PD            V ETLM  + +L     K  DD  FQEEL+   RDYVGR +PLYFAERLTEH      GG  IYLKRE+LNHTGAHKINN +GQ
Sbjct:    8 PDAKGLFGRFGGQYVAETLMPLILDLAREYEKAKDDPAFQEELAYFQRDYVGRPSPLYFAERLTEHC-----GGAKIYLKREELNHTGAHKINNCIGQ 100          
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB1_THEMA (Tryptophan synthase beta chain 1 OS=Thermotoga maritima GN=trpB1 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 8.848e-21
Identity = 51/84 (60.71%), Postives = 59/84 (70.24%), Query Frame = 2
Query:  278 VPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQ 529
            VPE LM AL ELE+A  ++  D  F +E + +LRDY GR TPLYFA RL+E Y      G  IYLKREDL HTGAHKINNA+GQ
Sbjct:   13 VPEILMPALEELEAAYEEIMKDESFWKEFNDLLRDYAGRPTPLYFARRLSEKY------GARIYLKREDLLHTGAHKINNAIGQ 90          
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB_THEP3 (Tryptophan synthase beta chain OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=trpB PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.156e-20
Identity = 51/84 (60.71%), Postives = 58/84 (69.05%), Query Frame = 2
Query:  278 VPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQ 529
            VPET+M AL ELE    K  +D+DF EE    LR+Y GR TPLY+AE LT+       GG  IYLKREDLNHTGAHKINN +GQ
Sbjct:   13 VPETVMNALIELEREFEKAKEDKDFMEEYRYYLREYSGRPTPLYYAENLTKRL-----GGAKIYLKREDLNHTGAHKINNVLGQ 91          
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB_PHEZH (Tryptophan synthase beta chain OS=Phenylobacterium zucineum (strain HLK1) GN=trpB PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.156e-20
Identity = 53/98 (54.08%), Postives = 61/98 (62.24%), Query Frame = 2
Query:  236 PDVXXXXXXXXXXXVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQ 529
            PD+           VPETLM  + EL +A      D  FQ EL+G L  YVGR +PLYFAERLT HY     GG  IYLKRE+LNHTG+HKINN +GQ
Sbjct:   14 PDLKGRFGDYGGQYVPETLMPLVHELTAAYEAAKADPAFQAELAGYLTHYVGRPSPLYFAERLTRHY-----GGAKIYLKREELNHTGSHKINNCMGQ 106          
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB_CAMJD (Tryptophan synthase beta chain OS=Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=trpB PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.156e-20
Identity = 49/85 (57.65%), Postives = 64/85 (75.29%), Query Frame = 2
Query:  278 VPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 532
            +PE+ M+AL+ELE+A  K + D+ F++ELS +L+ YVGR TPLYFA  L++ Y+        IYLKREDLNHTGAHKINNA+ QA
Sbjct:   14 LPESAMFALNELENAFLKFSKDKFFKKELSELLKTYVGRPTPLYFARNLSKKYQH------EIYLKREDLNHTGAHKINNAIAQA 92          
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB_THEPX (Tryptophan synthase beta chain OS=Thermoanaerobacter sp. (strain X514) GN=trpB PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.574e-20
Identity = 51/84 (60.71%), Postives = 57/84 (67.86%), Query Frame = 2
Query:  278 VPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQ 529
            VPET+M AL ELE    K   D+DF EE    LR+Y GR TPLY+AE LT+       GG  IYLKREDLNHTGAHKINN +GQ
Sbjct:   13 VPETVMNALIELEREFEKAKQDKDFMEEYRYYLREYSGRPTPLYYAENLTKKL-----GGAKIYLKREDLNHTGAHKINNVLGQ 91          
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB_OLICO (Tryptophan synthase beta chain OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=trpB PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.574e-20
Identity = 49/84 (58.33%), Postives = 60/84 (71.43%), Query Frame = 2
Query:  278 VPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQ 529
            V ETLM  + +LE A      D  FQ+E++G L+DYVGR +PLYFAERLTEH      GG  IYLKRE+LNHTG+HK+NN +GQ
Sbjct:   27 VAETLMPLILDLEKAYAAAKADPSFQKEMNGYLKDYVGRPSPLYFAERLTEHL-----GGAKIYLKREELNHTGSHKVNNVLGQ 105          
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB_RHOP2 (Tryptophan synthase beta chain OS=Rhodopseudomonas palustris (strain HaA2) GN=trpB PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 4.391e-20
Identity = 49/84 (58.33%), Postives = 58/84 (69.05%), Query Frame = 2
Query:  278 VPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQ 529
            V ETLM  +  LE A  +  DD  F+ E+ G L+ YVGR +PLYFAERLTEH+     GG  IY KREDLNHTGAHK+NN +GQ
Sbjct:   27 VAETLMPLILALEKAYAEAKDDPAFRAEMDGYLKHYVGRPSPLYFAERLTEHF-----GGAKIYFKREDLNHTGAHKVNNVLGQ 105          
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB_CLOAB (Tryptophan synthase beta chain OS=Clostridium acetobutylicum GN=trpB PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 4.391e-20
Identity = 50/84 (59.52%), Postives = 59/84 (70.24%), Query Frame = 2
Query:  278 VPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQ 529
            VPETLM A++ELE   +K  +D  F  E    L  YVGRETPLYFAE +T+     N GG  IYLKREDLNHTG+HK+NNA+GQ
Sbjct:   13 VPETLMNAINELEVEFNKAINDEKFMMEYKYYLEKYVGRETPLYFAENMTK-----NLGGAKIYLKREDLNHTGSHKLNNALGQ 91          
The following BLAST results are available for this feature:
BLAST of CF836274 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 318
Match NameE-valueIdentityDescription
TRPB_RHOPS8.848e-2159.52Tryptophan synthase beta chain OS=Rhodopseudomonas... [more]
TRPB_PSEAE8.848e-2155.10Tryptophan synthase beta chain OS=Pseudomonas aeru... [more]
TRPB1_THEMA8.848e-2160.71Tryptophan synthase beta chain 1 OS=Thermotoga mar... [more]
TRPB_THEP31.156e-2060.71Tryptophan synthase beta chain OS=Thermoanaerobact... [more]
TRPB_PHEZH1.156e-2054.08Tryptophan synthase beta chain OS=Phenylobacterium... [more]
TRPB_CAMJD1.156e-2057.65Tryptophan synthase beta chain OS=Campylobacter je... [more]
TRPB_THEPX2.574e-2060.71Tryptophan synthase beta chain OS=Thermoanaerobact... [more]
TRPB_OLICO2.574e-2058.33Tryptophan synthase beta chain OS=Oligotropha carb... [more]
TRPB_RHOP24.391e-2058.33Tryptophan synthase beta chain OS=Rhodopseudomonas... [more]
TRPB_CLOAB4.391e-2059.52Tryptophan synthase beta chain OS=Clostridium acet... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02L07_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02L07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836274 ID=CF836274; Name=CF836274; organism=Citrus sinensis; type=EST; length=532bp
TCCATATCCCTCCTTTAAAAAACCTCTAATGGCCGTCGCCACAGGTTCAA
GCTTCTGTTGCAAACTCGCAAAGCCCTGCGCTTTCACGACATCGAATTCC
TCGCAGTCGCCCTTCAAGTTGAAGAAATTTACAGCCAGCCCAGCCAAATC
GACGTCCATTCGCTGTACCATTGCGAGAGACCCGGTCGTTCCCATGGAGG
CCAAGAAGGAGTCCGACCCTGCCCCGTGGCAGAGACCTGATGTGTTTGGC
CGGTTCGGTAGGTTCGGCGGGAAGTTCGTCCCTGAGACGCTAATGTACGC
GCTTTCTGAGCTGGAATCCGCACTTCATAAACTCGCCGACGACCGAGATT
TTCAGGAGGAACTTTCGGGGATTTTGAGAGACTATGTCGGCAGGGAGACT
CCGCTTTATTTTGCTGAGCGGCTTACGGAGCACTACAGGCGGCCTAACGG
GGGAGGGCCTCACATATACCTCAAGAGGGAGGACCTCAACCACACTGGGG
CCCACAAGATCAACAATGCTGTTGGCCAAGCT
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