CF836274

Overview
NameCF836274
Unique NameCF836274
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length532
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7326 contig Csv1_Contig7326:10..541. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB_CAMJR (Tryptophan synthase beta chain OS=Campylobacter jejuni (strain RM1221) GN=trpB PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 4.391e-20
Identity = 48/85 (56.47%), Postives = 63/85 (74.12%), Query Frame = 2
Query:  278 VPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 532
            +PE+ M+AL+ELE A  K + D+ F++EL+ +L+ YVGR TPLYFA  L++ Y+        IYLKREDLNHTGAHKINNA+ QA
Sbjct:   14 LPESAMFALNELEGAFLKFSKDKLFKKELNELLKTYVGRPTPLYFARNLSKKYQH------EIYLKREDLNHTGAHKINNAIAQA 92          
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB_CAMJJ (Tryptophan synthase beta chain OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=trpB PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 4.391e-20
Identity = 48/85 (56.47%), Postives = 63/85 (74.12%), Query Frame = 2
Query:  278 VPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 532
            +PE+ M+AL+ELE A  K + D+ F++EL+ +L+ YVGR TPLYFA  L++ Y+        IYLKREDLNHTGAHKINNA+ QA
Sbjct:   14 LPESAMFALNELEGAFLKFSKDKLFKKELNELLKTYVGRPTPLYFARNLSKKYQH------EIYLKREDLNHTGAHKINNAIAQA 92          
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB_CAMJE (Tryptophan synthase beta chain OS=Campylobacter jejuni GN=trpB PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 4.391e-20
Identity = 48/85 (56.47%), Postives = 63/85 (74.12%), Query Frame = 2
Query:  278 VPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 532
            +PE+ M+AL+ELE A  K + D+ F++EL+ +L+ YVGR TPLYFA  L++ Y+        IYLKREDLNHTGAHKINNA+ QA
Sbjct:   14 LPESAMFALNELEGAFLKFSKDKLFKKELNELLKTYVGRPTPLYFARNLSKKYQH------EIYLKREDLNHTGAHKINNAIAQA 92          
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB_CAMJ8 (Tryptophan synthase beta chain OS=Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=trpB PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 4.391e-20
Identity = 48/85 (56.47%), Postives = 63/85 (74.12%), Query Frame = 2
Query:  278 VPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 532
            +PE+ M+AL+ELE A  K + D+ F++EL+ +L+ YVGR TPLYFA  L++ Y+        IYLKREDLNHTGAHKINNA+ QA
Sbjct:   14 LPESAMFALNELEGAFLKFSKDKLFKKELNELLKTYVGRPTPLYFARNLSKKYQH------EIYLKREDLNHTGAHKINNAIAQA 92          
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB_CLOB8 (Tryptophan synthase beta chain OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=trpB PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 5.735e-20
Identity = 49/84 (58.33%), Postives = 60/84 (71.43%), Query Frame = 2
Query:  278 VPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQ 529
            VPET+M AL ELE A +K+ DD++F +E    L  Y GR +PLY+AE +T+       GG  IYLKREDLNHTGAHKINNA+GQ
Sbjct:   13 VPETVMNALIELEDAYNKVIDDKEFMDEYMYYLNYYTGRPSPLYYAENMTKDL-----GGAKIYLKREDLNHTGAHKINNALGQ 91          
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB2_WOLSU (Tryptophan synthase beta chain 2 OS=Wolinella succinogenes GN=trpB2 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 9.783e-20
Identity = 56/105 (53.33%), Postives = 66/105 (62.86%), Query Frame = 2
Query:  218 PAPWQ-RPDVXXXXXXXXXXXVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQ 529
            P P Q  PD            VPETLM AL ELESA ++L  DR+F  E+   L++YVGR +PLY+AERL++        G  IYLKREDLNHTGAHKINN V Q
Sbjct:    6 PTPSQFDPDERGHFGKFGGRFVPETLMPALLELESAYNELRFDREFWSEVDYYLKEYVGRPSPLYYAERLSDEL------GAKIYLKREDLNHTGAHKINNTVIQ 104          
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB_BACSU (Tryptophan synthase beta chain OS=Bacillus subtilis GN=trpB PE=3 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 1.278e-19
Identity = 48/85 (56.47%), Postives = 62/85 (72.94%), Query Frame = 2
Query:  278 VPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 532
            VPETLM  L E+++A  ++ DD  F+EE   +L+DY GR T L +A+R+TE+      GG  IYLKREDLNHTG+HKINNA+GQA
Sbjct:   19 VPETLMQPLDEIQTAFKQIKDDPAFREEYYKLLKDYSGRPTALTYADRVTEYL-----GGAKIYLKREDLNHTGSHKINNALGQA 98          
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB_BACLD (Tryptophan synthase beta chain OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=trpB PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.278e-19
Identity = 50/85 (58.82%), Postives = 59/85 (69.41%), Query Frame = 2
Query:  278 VPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 532
            VPETLM  L E+E A  +L DD  FQ++   +L DY GR T L FA++LT+       GG  IYLKREDLNHTGAHKINNA+GQA
Sbjct:   19 VPETLMQPLEEIEKAFLELKDDPSFQKDYQKLLNDYSGRPTALTFADQLTKQL-----GGAKIYLKREDLNHTGAHKINNALGQA 98          
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB_STAS1 (Tryptophan synthase beta chain OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=trpB PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.669e-19
Identity = 51/85 (60.00%), Postives = 59/85 (69.41%), Query Frame = 2
Query:  278 VPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 532
            VPETLM A+ EL+ A     +D  FQ EL   L+DYVGRETPL +A+  +E       GG  IYLKREDLNHTGAHKINNA+GQA
Sbjct:   23 VPETLMPAIQELKQAYQDAKNDPQFQIELDDYLKDYVGRETPLTYAKSYSELL-----GGAKIYLKREDLNHTGAHKINNALGQA 102          
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB_ACIBL (Tryptophan synthase beta chain OS=Acidobacteria bacterium (strain Ellin345) GN=trpB PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.179e-19
Identity = 48/84 (57.14%), Postives = 58/84 (69.05%), Query Frame = 2
Query:  278 VPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQ 529
            VPETLM AL ELE+A      D+ F+EE+  +LR+Y GR TPL+ A+ LT+       GG  IYLKREDL HTGAHKINN +GQ
Sbjct:   32 VPETLMAALQELEAAYEAAKRDKKFKEEIESLLREYAGRPTPLFLAKNLTQKL-----GGAKIYLKREDLLHTGAHKINNCIGQ 110          
The following BLAST results are available for this feature:
BLAST of CF836274 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 318
Match NameE-valueIdentityDescription
TRPB_CAMJR4.391e-2056.47Tryptophan synthase beta chain OS=Campylobacter je... [more]
TRPB_CAMJJ4.391e-2056.47Tryptophan synthase beta chain OS=Campylobacter je... [more]
TRPB_CAMJE4.391e-2056.47Tryptophan synthase beta chain OS=Campylobacter je... [more]
TRPB_CAMJ84.391e-2056.47Tryptophan synthase beta chain OS=Campylobacter je... [more]
TRPB_CLOB85.735e-2058.33Tryptophan synthase beta chain OS=Clostridium beij... [more]
TRPB2_WOLSU9.783e-2053.33Tryptophan synthase beta chain 2 OS=Wolinella succ... [more]
TRPB_BACSU1.278e-1956.47Tryptophan synthase beta chain OS=Bacillus subtili... [more]
TRPB_BACLD1.278e-1958.82Tryptophan synthase beta chain OS=Bacillus licheni... [more]
TRPB_STAS11.669e-1960.00Tryptophan synthase beta chain OS=Staphylococcus s... [more]
TRPB_ACIBL2.179e-1957.14Tryptophan synthase beta chain OS=Acidobacteria ba... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02L07_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02L07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836274 ID=CF836274; Name=CF836274; organism=Citrus sinensis; type=EST; length=532bp
TCCATATCCCTCCTTTAAAAAACCTCTAATGGCCGTCGCCACAGGTTCAA
GCTTCTGTTGCAAACTCGCAAAGCCCTGCGCTTTCACGACATCGAATTCC
TCGCAGTCGCCCTTCAAGTTGAAGAAATTTACAGCCAGCCCAGCCAAATC
GACGTCCATTCGCTGTACCATTGCGAGAGACCCGGTCGTTCCCATGGAGG
CCAAGAAGGAGTCCGACCCTGCCCCGTGGCAGAGACCTGATGTGTTTGGC
CGGTTCGGTAGGTTCGGCGGGAAGTTCGTCCCTGAGACGCTAATGTACGC
GCTTTCTGAGCTGGAATCCGCACTTCATAAACTCGCCGACGACCGAGATT
TTCAGGAGGAACTTTCGGGGATTTTGAGAGACTATGTCGGCAGGGAGACT
CCGCTTTATTTTGCTGAGCGGCTTACGGAGCACTACAGGCGGCCTAACGG
GGGAGGGCCTCACATATACCTCAAGAGGGAGGACCTCAACCACACTGGGG
CCCACAAGATCAACAATGCTGTTGGCCAAGCT
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