CF836274

Overview
NameCF836274
Unique NameCF836274
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length532
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7326 contig Csv1_Contig7326:10..541. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB_PSEF5 (Tryptophan synthase beta chain OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=trpB PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.846e-19
Identity = 49/84 (58.33%), Postives = 58/84 (69.05%), Query Frame = 2
Query:  278 VPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQ 529
            V ETLM  + +L     K  +D +F +EL+   RDYVGR +PLYFAERLTEH      GG  IYLKRE+LNHTGAHKINN +GQ
Sbjct:   24 VAETLMPLILDLAREYEKAKEDPEFLKELAYFQRDYVGRPSPLYFAERLTEHC-----GGAKIYLKREELNHTGAHKINNCIGQ 102          
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB_LEPBP (Tryptophan synthase beta chain OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=trpB PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.846e-19
Identity = 49/84 (58.33%), Postives = 60/84 (71.43%), Query Frame = 2
Query:  281 PETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 532
            PE L  AL ELES   KL   + F++EL   L++YVGR +PL +AERLT+ +     GG  I+LKREDLNHTGAHKINNA+GQA
Sbjct:   18 PEILTEALEELESTYQKLKKSKKFKKELEFYLQNYVGRPSPLTYAERLTKQW-----GGARIWLKREDLNHTGAHKINNAIGQA 96          
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB_LEPBA (Tryptophan synthase beta chain OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=trpB PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.846e-19
Identity = 49/84 (58.33%), Postives = 60/84 (71.43%), Query Frame = 2
Query:  281 PETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 532
            PE L  AL ELES   KL   + F++EL   L++YVGR +PL +AERLT+ +     GG  I+LKREDLNHTGAHKINNA+GQA
Sbjct:   18 PEILTEALEELESTYQKLKKSKKFKKELEFYLQNYVGRPSPLTYAERLTKQW-----GGARIWLKREDLNHTGAHKINNAIGQA 96          
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB_CLOK5 (Tryptophan synthase beta chain OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=trpB PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.846e-19
Identity = 49/84 (58.33%), Postives = 59/84 (70.24%), Query Frame = 2
Query:  278 VPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQ 529
            VPET+M AL ELE + +K  +D  F +E    L++Y GR TPLY+AE LT+     N GG  IYLKREDLNHTGAHKINN +GQ
Sbjct:   19 VPETVMTALMELEESFNKAKEDSKFIDEYMYYLQEYSGRPTPLYYAENLTK-----NLGGAKIYLKREDLNHTGAHKINNVLGQ 97          
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB_CLOK1 (Tryptophan synthase beta chain OS=Clostridium kluyveri (strain NBRC 12016) GN=trpB PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.846e-19
Identity = 49/84 (58.33%), Postives = 59/84 (70.24%), Query Frame = 2
Query:  278 VPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQ 529
            VPET+M AL ELE + +K  +D  F +E    L++Y GR TPLY+AE LT+     N GG  IYLKREDLNHTGAHKINN +GQ
Sbjct:   19 VPETVMTALMELEESFNKAKEDSKFIDEYMYYLQEYSGRPTPLYYAENLTK-----NLGGAKIYLKREDLNHTGAHKINNVLGQ 97          
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB_BRAJA (Tryptophan synthase beta chain OS=Bradyrhizobium japonicum GN=trpB PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.846e-19
Identity = 48/84 (57.14%), Postives = 59/84 (70.24%), Query Frame = 2
Query:  278 VPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQ 529
            V ETLM  + +LE A      D  FQ E++G L++YVGR +PLYFAERLTEH      GG  IYLKRE+LNHTG+HK+NN +GQ
Sbjct:   27 VAETLMPLILDLEKAYTAAKADPAFQAEMNGYLKNYVGRPSPLYFAERLTEHL-----GGAKIYLKREELNHTGSHKVNNVLGQ 105          
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB_RHOPB (Tryptophan synthase beta chain OS=Rhodopseudomonas palustris (strain BisB18) GN=trpB PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.717e-19
Identity = 47/84 (55.95%), Postives = 57/84 (67.86%), Query Frame = 2
Query:  278 VPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQ 529
            V ETLM  + +LE A      D  FQ E+ G L+DYVGR +PLYFAERLT+H      GG  IY KRE+LNHTG+HK+NN +GQ
Sbjct:   27 VAETLMPLILDLEKAYAGAKADPSFQREMDGYLKDYVGRPSPLYFAERLTDHL-----GGAKIYFKREELNHTGSHKVNNVLGQ 105          
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB_RHOBA (Tryptophan synthase beta chain OS=Rhodopirellula baltica GN=trpB PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.717e-19
Identity = 53/113 (46.90%), Postives = 62/113 (54.87%), Query Frame = 2
Query:  194 MEAKKESDPAPWQRPDVXXXXXXXXXXXVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 532
            M        A  Q PD            VPETL  AL EL     K   D +FQ EL G+L+ +VGR +PLY A+RL+        GG  I+LKREDLNHTGAHKINN +GQA
Sbjct:    1 MSTAPSQQHASAQVPDPRGRFGDFGGRFVPETLTRALDELSEEYEKAKRDPEFQRELDGLLKTFVGRPSPLYHAKRLSSAV-----GGAQIWLKREDLNHTGAHKINNTIGQA 108          
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB_METJA (Tryptophan synthase beta chain OS=Methanocaldococcus jannaschii GN=trpB PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.855e-19
Identity = 50/87 (57.47%), Postives = 63/87 (72.41%), Query Frame = 2
Query:  278 VPETLMYALSELESALHK--LADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 532
            VPETLM A++ELE A  +  + ++ +F+EE   +LRDYVGR TPLY+AERL+E        G  +YLKREDL H GAHKINNA+GQA
Sbjct:   26 VPETLMPAIAELEEAFKRFWINNEGNFREEFYALLRDYVGRPTPLYYAERLSEEL------GCKVYLKREDLAHLGAHKINNALGQA 106          
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB_META3 (Tryptophan synthase beta chain OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=trpB PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.855e-19
Identity = 51/85 (60.00%), Postives = 58/85 (68.24%), Query Frame = 2
Query:  278 VPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 532
            VPE LM +L ELE A  K  DD +F+EEL   L+ Y GRETPLYFAE LT+       GG  IYLKREDL   GAHKINN++GQA
Sbjct:   13 VPEVLMPSLKELEKAYKKYKDDPEFKEELEYYLKQYAGRETPLYFAENLTKKM-----GGAKIYLKREDLLLGGAHKINNSLGQA 92          
The following BLAST results are available for this feature:
BLAST of CF836274 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 318
Match NameE-valueIdentityDescription
TRPB_PSEF52.846e-1958.33Tryptophan synthase beta chain OS=Pseudomonas fluo... [more]
TRPB_LEPBP2.846e-1958.33Tryptophan synthase beta chain OS=Leptospira bifle... [more]
TRPB_LEPBA2.846e-1958.33Tryptophan synthase beta chain OS=Leptospira bifle... [more]
TRPB_CLOK52.846e-1958.33Tryptophan synthase beta chain OS=Clostridium kluy... [more]
TRPB_CLOK12.846e-1958.33Tryptophan synthase beta chain OS=Clostridium kluy... [more]
TRPB_BRAJA2.846e-1957.14Tryptophan synthase beta chain OS=Bradyrhizobium j... [more]
TRPB_RHOPB3.717e-1955.95Tryptophan synthase beta chain OS=Rhodopseudomonas... [more]
TRPB_RHOBA3.717e-1946.90Tryptophan synthase beta chain OS=Rhodopirellula b... [more]
TRPB_METJA4.855e-1957.47Tryptophan synthase beta chain OS=Methanocaldococc... [more]
TRPB_META34.855e-1960.00Tryptophan synthase beta chain OS=Methanococcus ae... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02L07_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02L07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836274 ID=CF836274; Name=CF836274; organism=Citrus sinensis; type=EST; length=532bp
TCCATATCCCTCCTTTAAAAAACCTCTAATGGCCGTCGCCACAGGTTCAA
GCTTCTGTTGCAAACTCGCAAAGCCCTGCGCTTTCACGACATCGAATTCC
TCGCAGTCGCCCTTCAAGTTGAAGAAATTTACAGCCAGCCCAGCCAAATC
GACGTCCATTCGCTGTACCATTGCGAGAGACCCGGTCGTTCCCATGGAGG
CCAAGAAGGAGTCCGACCCTGCCCCGTGGCAGAGACCTGATGTGTTTGGC
CGGTTCGGTAGGTTCGGCGGGAAGTTCGTCCCTGAGACGCTAATGTACGC
GCTTTCTGAGCTGGAATCCGCACTTCATAAACTCGCCGACGACCGAGATT
TTCAGGAGGAACTTTCGGGGATTTTGAGAGACTATGTCGGCAGGGAGACT
CCGCTTTATTTTGCTGAGCGGCTTACGGAGCACTACAGGCGGCCTAACGG
GGGAGGGCCTCACATATACCTCAAGAGGGAGGACCTCAACCACACTGGGG
CCCACAAGATCAACAATGCTGTTGGCCAAGCT
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