CF836277

Overview
NameCF836277
Unique NameCF836277
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length615
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836277 vs. ExPASy Swiss-Prot
Match: RKF1_ARATH (Probable LRR receptor-like serine/threonine-protein kinase RFK1 OS=Arabidopsis thaliana GN=RKF1 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.198e-12
Identity = 41/105 (39.05%), Postives = 63/105 (60.00%), Query Frame = -1
Query:  295 SNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPT 609
            + LSG +  E G    L YL+L  N   GTIP ELGNL  L  L L +N ++G +P SLA+L+++   R+ND +L+G IP  +     L+ +++ ++ L G IP+
Sbjct:  156 NRLSGEIPKEFGN-SSLTYLDLESNAFSGTIPQELGNLVHLKKLLLSSNKLTGTLPASLARLQNMTDFRINDLQLSGTIPSYIQNWKQLERLEMIASGLTGPIPS 259          
BLAST of CF836277 vs. ExPASy Swiss-Prot
Match: PSKR2_ARATH (Phytosulfokine receptor 2 OS=Arabidopsis thaliana GN=PSKR2 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.565e-12
Identity = 41/99 (41.41%), Postives = 54/99 (54.55%), Query Frame = -1
Query:  250 LYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTSGPFEHIPLNNFENN 546
            L  N + GTI  E+G LK L  LDL  NN +G IP S++ L +L  L L+ N L G IP     ++ L    V+ N L G IP+ G F   P ++FE N
Sbjct:  543 LNNNRLNGTILPEIGRLKELHMLDLSRNNFTGTIPDSISGLDNLEVLDLSYNHLYGSIPLSFQSLTFLSRFSVAYNRLTGAIPSGGQFYSFPHSSFEGN 641          

HSP 2 Score: 70.8626 bits (172), Expect = 5.945e-12
Identity = 40/104 (38.46%), Postives = 55/104 (52.88%), Query Frame = -1
Query:  292 LSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTS 603
            LSG L   L  L  L+ L + +N     IP   GNL  L  LD+ +N  SG+ PPSL++   L  L L +N L+G I     G + L V+D++SN   G +P S
Sbjct:  244 LSGELSKNLSNLSGLKSLLISENRFSDVIPDVFGNLTQLEHLDVSSNKFSGRFPPSLSQCSKLRVLDLRNNSLSGSINLNFTGFTDLCVLDLASNHFSGPLPDS 347          
BLAST of CF836277 vs. ExPASy Swiss-Prot
Match: RPKL_ARATH (Receptor protein kinase-like protein At4g34220 OS=Arabidopsis thaliana GN=At4g34220 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.043e-12
Identity = 40/121 (33.06%), Postives = 67/121 (55.37%), Query Frame = -1
Query:  250 NSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTSGPFEHIPLNNFENN 612
            N +L G + P+L  + +L+ L+L  N   G++P  + N   L S+ L +NN+SG +P S+  + +L  L L+ N  TG+IP  +  + +L VV +S N   G IP+   FE   + +  +N
Sbjct:   88 NKHLLGSITPDLFSIPYLRILDLSSNFFNGSLPDSVFNATELQSISLGSNNLSGDLPKSVNSVTNLQLLNLSANAFTGEIPLNISLLKNLTVVSLSKNTFSGDIPSG--FEAAQILDLSSN 206          
BLAST of CF836277 vs. ExPASy Swiss-Prot
Match: PGIP1_ARATH (Polygalacturonase inhibitor 1 OS=Arabidopsis thaliana GN=PGIP1 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.669e-12
Identity = 42/107 (39.25%), Postives = 63/107 (58.88%), Query Frame = -1
Query:  292 SNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGI-SSLKVVDVSSNDLCGTIPTS 609
            SNL+G + P + KL++L+ L L   N+ G IP  +  LK+L  L+L  N++SG IP SL+ L  ++ L L+ N+LTG IP        ++  + +S N L G IP S
Sbjct:  105 SNLTGTIQPTIAKLKNLRMLRLSWTNLTGPIPDFISQLKNLEFLELSFNDLSGSIPSSLSTLPKILALELSRNKLTGSIPESFGSFPGTVPDLRLSHNQLSGPIPKS 211          
BLAST of CF836277 vs. ExPASy Swiss-Prot
Match: Y5332_ARATH (Probable inactive receptor kinase At5g53320 OS=Arabidopsis thaliana GN=At5g53320 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.485e-12
Identity = 44/121 (36.36%), Postives = 69/121 (57.02%), Query Frame = -1
Query:  250 NSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTSGPFEHIPLNNFENN 612
            ++N+SG     L  L++L  L+L  N   G +P +L + + L  LDL NN  +G IP S+ KL  L  L L  N+ +G+IP   + I  LK+++++ N+L GT+P S   +  PL+ F  N
Sbjct:   99 SNNISGTFPTTLQALKNLTELKLDFNEFSGPLPSDLSSWERLQVLDLSNNRFNGSIPSSIGKLTLLHSLNLAYNKFSGEIPD--LHIPGLKLLNLAHNNLTGTVPQS--LQRFPLSAFVGN 215          
BLAST of CF836277 vs. ExPASy Swiss-Prot
Match: Y1719_ARATH (Probable inactive receptor kinase At1g27190 OS=Arabidopsis thaliana GN=At1g27190 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.552e-12
Identity = 39/104 (37.50%), Postives = 63/104 (60.58%), Query Frame = -1
Query:  295 LSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGN-LKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPT 603
            L+G +   L     LQ L+L  N++ G+IP ++ + L  L++LDL  N + G IP  + + K L  L L+DN+L+G IP +L  +  L+ + ++ NDL GTIP+
Sbjct:   84 LAGEIPESLKLCRSLQSLDLSGNDLSGSIPSQICSWLPYLVTLDLSGNKLGGSIPTQIVECKFLNALILSDNKLSGSIPSQLSRLDRLRRLSLAGNDLSGTIPS 187          
BLAST of CF836277 vs. ExPASy Swiss-Prot
Match: BRL1_ARATH (Serine/threonine-protein kinase BRI1-like 1 OS=Arabidopsis thaliana GN=BRL1 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.945e-12
Identity = 41/110 (37.27%), Postives = 63/110 (57.27%), Query Frame = -1
Query:  298 GNSNLSGRLVPEL-GKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKS---LVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIP 615
            GN+ LSG  +  +  K+  + YL +  NNI G++P+ L N  +L  LDL +N  +G +P     L+S   L  + + +N L+G +P EL    SLK +D+S N+L G IP
Sbjct:  334 GNNYLSGDFLNTVVSKITGITYLYVAYNNISGSVPISLTNCSNLRVLDLSSNGFTGNVPSGFCSLQSSPVLEKILIANNYLSGTVPMELGKCKSLKTIDLSFNELTGPIP 443          

HSP 2 Score: 69.3218 bits (168), Expect = 1.730e-11
Identity = 34/90 (37.78%), Postives = 52/90 (57.78%), Query Frame = -1
Query:  343 NSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSL 612
            N+ L+G +   + +  ++ ++ L  N + G IP  +GNL  L  L L NN++SG +P  L   KSL++L LN N LTG +P EL   + L
Sbjct:  484 NNLLTGSIPESISRCTNMIWISLSSNRLTGKIPSGIGNLSKLAILQLGNNSLSGNVPRQLGNCKSLIWLDLNSNNLTGDLPGELASQAGL 573          

HSP 3 Score: 68.5514 bits (166), Expect = 2.951e-11
Identity = 44/123 (35.77%), Postives = 69/123 (56.10%), Query Frame = -1
Query:  250 NSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSL-AKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTS-GPFEHIPLNNFENN 612
            N+ LSG +  ELGK + L+ ++L  N + G IP E+  L +L  L ++ NN++G IP  +  K  +L  L LN+N LTG IP  +   +++  + +SSN L G IP+  G    + +    NN
Sbjct:  411 NNYLSGTVPMELGKCKSLKTIDLSFNELTGPIPKEIWMLPNLSDLVMWANNLTGTIPEGVCVKGGNLETLILNNNLLTGSIPESISRCTNMIWISLSSNRLTGKIPSGIGNLSKLAILQLGNN 533          

HSP 4 Score: 67.3958 bits (163), Expect = 6.573e-11
Identity = 42/129 (32.56%), Postives = 68/129 (52.71%), Query Frame = -1
Query:  298 SNLSGRLVPELGKLEHLQYLELYKNNIQGTIP----VELGNLKSLIS---------------------LDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIP 609
            + L+G +  E+  L +L  L ++ NN+ GTIP    V+ GNL++LI                      + L +N ++GKIP  +  L  L  L+L +N L+G +PR+L    SL  +D++SN+L G +P
Sbjct:  436 NELTGPIPKEIWMLPNLSDLVMWANNLTGTIPEGVCVKGGNLETLILNNNLLTGSIPESISRCTNMIWISLSSNRLTGKIPSGIGNLSKLAILQLGNNSLSGNVPRQLGNCKSLIWLDLNSNNLTGDLP 564          
BLAST of CF836277 vs. ExPASy Swiss-Prot
Match: Y1534_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g53420 OS=Arabidopsis thaliana GN=At1g53420 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 7.765e-12
Identity = 46/151 (30.46%), Postives = 82/151 (54.30%), Query Frame = -1
Query:  181 SNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTS----GPFEHIPLNNFENNPRLEGPELLGLASYDT----NCS*TID 609
            + L+G +  E G +  L  L L  N + G +P+ELGNL ++  + L +NN +G+IP + AKL +L   R++DN+L+G IP  +   + L+ + + ++ L G IP +       + + +++  N P    P+L  +   +T    NC+ T D
Sbjct:  120 NRLTGPIPKEFGNITTLTSLVLEANQLSGELPLELGNLPNIQQMILSSNNFNGEIPSTFAKLTTLRDFRVSDNQLSGTIPDFIQKWTKLERLFIQASGLVGPIPIAIASLVELKDLRISDL-NGPESPFPQLRNIKKMETLILRNCNLTGD 269          
BLAST of CF836277 vs. ExPASy Swiss-Prot
Match: Y2165_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At2g16250 OS=Arabidopsis thaliana GN=At2g16250 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.259e-11
Identity = 37/103 (35.92%), Postives = 57/103 (55.34%), Query Frame = -1
Query:  298 LSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGI-SSLKVVDVSSNDLCGTIP 603
            L+G + P LG L  L +L    N+    IP ELG+L +L+  DL  N++SG +P  L KL  L  + + DN L+G +P +L    S L+ + +  N   G++P
Sbjct:  212 LTGPIPPGLGALSKLIHLNFSSNSFSSPIPSELGDLVNLVDFDLSINSLSGSVPQELRKLSKLQLMAIGDNLLSGTLPVDLFSAESQLQTLVLRENGFSGSLP 314          
BLAST of CF836277 vs. ExPASy Swiss-Prot
Match: PGIP1_ORYSJ (Polygalacturonase inhibitor 1 OS=Oryza sativa subsp. japonica GN=FOR1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.951e-11
Identity = 46/123 (37.40%), Postives = 67/123 (54.47%), Query Frame = -1
Query:  235 LSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTSGPFEHIPLNNFENNPRLEG 603
            LSG +   L  L +LQ+L +   N+ G IP  L  ++SL S+DL +N+++G IP S + L +L  L L  N+LTG IP  LV     + + +S N L G IP     + I   +  +N RL G
Sbjct:  108 LSGPIPACLTALSNLQFLTISHTNVSGVIPDSLARIRSLDSVDLSHNSLTGPIPNSFSDLPNLRSLDLRSNKLTGCIPAGLVQ-GQFRSLILSYNQLTGPIPRDDAQDEINTVDLSHN-RLTG 228          
The following BLAST results are available for this feature:
BLAST of CF836277 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
RKF1_ARATH1.198e-1239.05Probable LRR receptor-like serine/threonine-protei... [more]
PSKR2_ARATH1.565e-1241.41Phytosulfokine receptor 2 OS=Arabidopsis thaliana ... [more]
RPKL_ARATH2.043e-1233.06Receptor protein kinase-like protein At4g34220 OS=... [more]
PGIP1_ARATH2.669e-1239.25Polygalacturonase inhibitor 1 OS=Arabidopsis thali... [more]
Y5332_ARATH3.485e-1236.36Probable inactive receptor kinase At5g53320 OS=Ara... [more]
Y1719_ARATH4.552e-1237.50Probable inactive receptor kinase At1g27190 OS=Ara... [more]
BRL1_ARATH5.945e-1237.27Serine/threonine-protein kinase BRI1-like 1 OS=Ara... [more]
Y1534_ARATH7.765e-1230.46Probable LRR receptor-like serine/threonine-protei... [more]
Y2165_ARATH2.259e-1135.92Probable LRR receptor-like serine/threonine-protei... [more]
PGIP1_ORYSJ2.951e-1137.40Polygalacturonase inhibitor 1 OS=Oryza sativa subs... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02L09_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02L09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836277 ID=CF836277; Name=CF836277; organism=Citrus sinensis; type=EST; length=615bp
AAAGNNGAAACACTTTTAAGAAGATCACAACGATGCTATTACAGATGCAT
TTAAGCAGTATAATACAATTTACATATATGATGGCTTCATTTCACCAATA
ACACTATGCTTTTTAGGTAAAGACGCTTTCAATCTTCGCGGACACATCTA
TTCGAAACCTGAGTAGAGCTTGAAGCAACAATCAATCGTTTATGAGCAGT
TTGTGTCATAACTTGCAAGTCCCAGCAACTCTGGACCTTCTAATCGAGGG
TTATTCTCAAAGTTGTTGAGTGGGATGTGTTCAAATGGTCCGCTTGTAGG
AATTGTTCCACACAGATCATTGCTTGAAACATCCACAACTTTGAGACTTG
AAATTCCAACAAGTTCCCTGGGAATTTGTCCAGTTAGCCGATTATCGTTA
AGCCGCAAAAAAACAAGAGATTTCAATTTAGCCAAGGAAGGAGGGATTTT
CCCCGAGATGTTGTTATTATACAAGTCCAAGCTGATGAGGCTCTTCAAGT
TACCGAGCTCGACAGGGATAGTTCCTTGGATGTTGTTTTTGTAAAGTTCC
AGGTATTGCAAATGCTCGAGCTTGCCCAGTTCAGGGACGAGACGGCCGGA
TAGATTTGAATTACC
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