CF836277

Overview
NameCF836277
Unique NameCF836277
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length615
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7970 contig Csv1_Contig7970:367..981. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836277 vs. ExPASy Swiss-Prot
Match: Y5815_ARATH (Probably inactive leucine-rich repeat receptor-like protein kinase At5g58150 OS=Arabidopsis thaliana GN=At5g58150 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.854e-11
Identity = 40/98 (40.82%), Postives = 58/98 (59.18%), Query Frame = -1
Query:  298 LVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIP 591
            L  +L  L  L+ L L  N I   +P  +GN  SL +LDL  N+ISGKIP +++ L +L  L+L++N     +P ELV   SL  +D+SSN L  ++P
Sbjct:  105 LPSDLWSLSLLESLNLSSNRISEPLPSNIGNFMSLHTLDLSFNSISGKIPAAISNLVNLTTLKLHNNDFQFGVPPELVHCRSLLSIDLSSNRLNESLP 202          
BLAST of CF836277 vs. ExPASy Swiss-Prot
Match: Y5020_ARATH (Probable inactive receptor kinase At5g10020 OS=Arabidopsis thaliana GN=At5g10020 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 3.854e-11
Identity = 36/94 (38.30%), Postives = 57/94 (60.64%), Query Frame = -1
Query:  298 LGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIP 579
            L     ++ L+L  N++ G +P ++G ++ +  L+L NN +SG++P  L KL  L+FL L++N   GQIP +L   S +   +VS NDL G IP
Sbjct:  464 LNSYPQMELLDLSTNSLTGMLPGDIGTMEKIKVLNLANNKLSGELPSDLNKLSGLLFLDLSNNTFKGQIPNKLP--SQMVGFNVSYNDLSGIIP 555          
BLAST of CF836277 vs. ExPASy Swiss-Prot
Match: SRF1_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 1 OS=Arabidopsis thaliana GN=SRF1 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 3.854e-11
Identity = 42/107 (39.25%), Postives = 62/107 (57.94%), Query Frame = -1
Query:  292 NSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTS 612
            ++NL G L   L     L+ ++   N+I G+IP  L    SL +L L  NN +G IP SL+ LKSL  + LN+N L+G+IP     +  +  +D+SSN+L G +P S
Sbjct:   85 SANLGGELGVGLNMFTSLKAMDFSNNHIGGSIPSTLP--VSLQNLFLSGNNFTGTIPESLSSLKSLSVMSLNNNLLSGKIPDVFQDLGLMINIDLSSNNLSGPLPPS 189          
BLAST of CF836277 vs. ExPASy Swiss-Prot
Match: Y5659_ARATH (Probable inactive receptor kinase At5g16590 OS=Arabidopsis thaliana GN=At5g16590 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.033e-11
Identity = 45/118 (38.14%), Postives = 61/118 (51.69%), Query Frame = -1
Query:  250 LSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTSGPFEHIPLNNFENN 603
            L+G L P+   L  L+YL L  N   G IP  L  L ++I ++L  NN  G+IP ++     L  L L DN+LTG IP   +    L+  +VSSN L G+IP   P   +P   F  N
Sbjct:   99 LNGPLPPDFANLTLLRYLYLQGNAFSGEIPSFLFTLPNIIRINLAQNNFLGRIPDNVNSATRLATLYLQDNQLTGPIPEIKI---KLQQFNVSSNQLNGSIP--DPLSGMPKTAFLGN 211          
BLAST of CF836277 vs. ExPASy Swiss-Prot
Match: Y3868_ARATH (Probable inactive receptor kinase At3g08680 OS=Arabidopsis thaliana GN=At3g08680 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.573e-11
Identity = 45/129 (34.88%), Postives = 72/129 (55.81%), Query Frame = -1
Query:  226 NSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTSGPFEHIPLNNFENNPRLEGPEL 612
            +++L G +   +  L  ++ L  ++NN  GTIP  L +   L++LDL  N++SG IP SL  L  L  L L +N L+G IP        LK +++S N+L G++P+S   +  P ++F+ N  L G  L
Sbjct:  101 SNHLQGNIPSVILSLPFIRSLYFHENNFSGTIPPVLSH--RLVNLDLSANSLSGNIPTSLQNLTQLTDLSLQNNSLSGPIPNL---PPRLKYLNLSFNNLNGSVPSS--VKSFPASSFQGNSLLCGAPL 222          
BLAST of CF836277 vs. ExPASy Swiss-Prot
Match: Y2267_ARATH (Probable inactive receptor kinase At2g26730 OS=Arabidopsis thaliana GN=At2g26730 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.585e-11
Identity = 44/135 (32.59%), Postives = 67/135 (49.63%), Query Frame = -1
Query:  208 NSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTSGPFEHIPLNNFENNPRLEGPELLGLASY 612
            ++ LSG++  +   L HL+ L L  N   G  P     L +LI LD+ +NN +G IP S+  L  L  L L +N  +G +P   +G+      +VS+N+L G+IP+S         +F  N  L G  L    S+
Sbjct:  100 SNRLSGQIPSDFSNLTHLRSLYLQHNEFSGEFPTSFTQLNNLIRLDISSNNFTGSIPFSVNNLTHLTGLFLGNNGFSGNLPSISLGLVDF---NVSNNNLNGSIPSS--LSRFSAESFTGNVDLCGGPLKPCKSF 229          
BLAST of CF836277 vs. ExPASy Swiss-Prot
Match: TMKL1_ARATH (Putative kinase-like protein TMKL1 OS=Arabidopsis thaliana GN=TMKL1 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.585e-11
Identity = 39/109 (35.78%), Postives = 64/109 (58.72%), Query Frame = -1
Query:  298 NSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKL-KSLVFLRLNDNRLTGQIPRELVGIS---SLKVVDVSSNDLCGTIP 612
            ++NL+G L  E+G+   LQ + L  N++ G+IP+ELG   SL  +DL  N ++G +PPS+  L   LV  +++ N L+G +P   +  S   +L+V+D+  N   G  P
Sbjct:  108 SANLTGSLPREIGEFSMLQSVFLNINSLSGSIPLELGYTSSLSDVDLSGNALAGVLPPSIWNLCDKLVSFKIHGNNLSGVLPEPALPNSTCGNLQVLDLGGNKFSGEFP 216          
BLAST of CF836277 vs. ExPASy Swiss-Prot
Match: PII2_ARATH (Piriformospora indica-insensitive protein 2 OS=Arabidopsis thaliana GN=PII-2 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.585e-11
Identity = 38/102 (37.25%), Postives = 59/102 (57.84%), Query Frame = -1
Query:  304 LVPELGK-LEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSN-----DLCGT 591
            ++P   K L+ L  L+L +N+  GT+P   G+L SL+ LDL NN + G +P  L  LK+L  L L +NR +G + + +  I SL  + +S+N     D+ GT
Sbjct:  206 MIPNCFKGLKELLILDLSRNSFSGTLPTSFGDLVSLLKLDLSNNLLEGNLPQELGFLKNLTLLDLRNNRFSGGLSKNIENIQSLTELVLSNNPMGEEDMVGT 307          
The following BLAST results are available for this feature:
BLAST of CF836277 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
Y5815_ARATH3.854e-1140.82Probably inactive leucine-rich repeat receptor-lik... [more]
Y5020_ARATH3.854e-1138.30Probable inactive receptor kinase At5g10020 OS=Ara... [more]
SRF1_ARATH3.854e-1139.25Protein STRUBBELIG-RECEPTOR FAMILY 1 OS=Arabidopsi... [more]
Y5659_ARATH5.033e-1138.14Probable inactive receptor kinase At5g16590 OS=Ara... [more]
Y3868_ARATH6.573e-1134.88Probable inactive receptor kinase At3g08680 OS=Ara... [more]
Y2267_ARATH8.585e-1132.59Probable inactive receptor kinase At2g26730 OS=Ara... [more]
TMKL1_ARATH8.585e-1135.78Putative kinase-like protein TMKL1 OS=Arabidopsis ... [more]
PII2_ARATH8.585e-1137.25Piriformospora indica-insensitive protein 2 OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02L09_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02L09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836277 ID=CF836277; Name=CF836277; organism=Citrus sinensis; type=EST; length=615bp
AAAGNNGAAACACTTTTAAGAAGATCACAACGATGCTATTACAGATGCAT
TTAAGCAGTATAATACAATTTACATATATGATGGCTTCATTTCACCAATA
ACACTATGCTTTTTAGGTAAAGACGCTTTCAATCTTCGCGGACACATCTA
TTCGAAACCTGAGTAGAGCTTGAAGCAACAATCAATCGTTTATGAGCAGT
TTGTGTCATAACTTGCAAGTCCCAGCAACTCTGGACCTTCTAATCGAGGG
TTATTCTCAAAGTTGTTGAGTGGGATGTGTTCAAATGGTCCGCTTGTAGG
AATTGTTCCACACAGATCATTGCTTGAAACATCCACAACTTTGAGACTTG
AAATTCCAACAAGTTCCCTGGGAATTTGTCCAGTTAGCCGATTATCGTTA
AGCCGCAAAAAAACAAGAGATTTCAATTTAGCCAAGGAAGGAGGGATTTT
CCCCGAGATGTTGTTATTATACAAGTCCAAGCTGATGAGGCTCTTCAAGT
TACCGAGCTCGACAGGGATAGTTCCTTGGATGTTGTTTTTGTAAAGTTCC
AGGTATTGCAAATGCTCGAGCTTGCCCAGTTCAGGGACGAGACGGCCGGA
TAGATTTGAATTACC
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