CF836278

Overview
NameCF836278
Unique NameCF836278
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length715
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836278 vs. ExPASy Swiss-Prot
Match: CBP23_HORVU (Serine carboxypeptidase II-3 OS=Hordeum vulgare GN=CXP;2-3 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.341e-11
Identity = 40/145 (27.59%), Postives = 69/145 (47.59%), Query Frame = -1
Query:  170 YAPTWANDKSVQRALGIQEGMVKE-WRRCNKSLS-YTTNVLSSLDYHRNLIKKGYQVLIYSGDVDMEIPYVGTETWIKSLNLTIDSGWQPWLVD----GQVAGFWMRYAEKNLYRLTFATVKGAGHTAPEYKPKECLEMINRWFA 586
            Y   + N   VQ+AL      +   W  C+  L+ +  +  + L   + L+K   +V +YSGD D  +P   +   +  L L + + W+PW       G+V G+ ++Y       L+  TV+GAGH  P Y+P+  L ++  + A
Sbjct:  363 YVEAYLNRPDVQKALHANVTRLDHPWSACSDVLTRWVDSAKTVLPIIQELMKNSIRVWVYSGDTDGRVPVTSSRLSVNQLQLPVAAKWRPWFSSTKGAGEVGGYIVQYKGD----LSLVTVRGAGHEVPSYQPRRALVLVQNFLA 503          
BLAST of CF836278 vs. ExPASy Swiss-Prot
Match: SCP27_ARATH (Serine carboxypeptidase-like 27 OS=Arabidopsis thaliana GN=SCPL27 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.987e-11
Identity = 40/146 (27.40%), Postives = 68/146 (46.58%), Query Frame = -1
Query:  158 YAPTWANDKSVQRALGIQEGMVK-EWRRCNKSLS--YTTNVLSSLDYHRNLIKKGYQVLIYSGDVDMEIPYVGTETWIKSLNLTIDSGWQPWLVDGQVAGFWMRYAEKNLYRLTFATVKGAGHTAPEYKPKECLEMINRWFAMYPL 586
            Y+  + N   VQ+AL      +   W+ C+  +   +  + LS L  ++ LI  G ++ ++SGD D  +P   T   + +L L   + W PW   G+V G+   Y       LT  TV GAGH  P ++P++   +   +    P+
Sbjct:  316 YSNVYFNRLDVQKALHANVTRLSYPWKACSDIVGSYWDDSPLSMLPIYKELITAGLKIWVFSGDTDAVVPITATRYSVDALKLATITNWYPWYDHGKVGGWSQVYK-----GLTLVTVAGAGHEVPLHRPRQAFILFRSFLESKPM 456          
BLAST of CF836278 vs. ExPASy Swiss-Prot
Match: CBP22_HORVU (Serine carboxypeptidase II-2 (Fragment) OS=Hordeum vulgare GN=CXP;2-2 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.987e-11
Identity = 45/141 (31.91%), Postives = 71/141 (50.35%), Query Frame = -1
Query:  158 NDKSVQRALGIQEGMVK-EWRRCNKSLS--YTTNVLSSLDYHRNLIKKGYQVLIYSGDVDMEIPYVGTETWIKSLNLTIDSGWQPWL-VDGQVAGFWMRYAEKNLYRLTFATVKGAGHTAPEYKPKECLEMINRWFAMYPL 568
            N   VQ+AL +   + K +W  C++ ++  +     S L  +  LI+ G ++ ++SGD D  IP   T   I +L L   + W  W   DG+V G+   Y       L F TV+GAGH  P ++PK+ L +I  + A  P+
Sbjct:  291 NLHEVQKALHVNPVIGKSKWETCSEVINTNWKDCERSVLHIYHELIQYGLRIWMFSGDTDAVIPVTSTRYSIDALKLPTVTPWHAWYDDDGEVGGWTQGYK-----GLNFVTVRGAGHEVPLHRPKQALTLIKSFLAGRPM 426          
The following BLAST results are available for this feature:
BLAST of CF836278 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
CBP23_HORVU1.341e-1127.59Serine carboxypeptidase II-3 OS=Hordeum vulgare GN... [more]
SCP27_ARATH2.987e-1127.40Serine carboxypeptidase-like 27 OS=Arabidopsis tha... [more]
CBP22_HORVU2.987e-1131.91Serine carboxypeptidase II-2 (Fragment) OS=Hordeum... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02L10_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02L10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836278 ID=CF836278; Name=CF836278; organism=Citrus sinensis; type=EST; length=715bp
TTTTTTTTTTTTTTAATACATTAATTTAATATTATATAAAATCCATATAG
TACAGAATAGCGCTAAACACTGTATAAAATTATTCTAATATAATATTAAT
ACAATACAACATAATCCAATACATTTGGATATTCTCAAAGTACTGAACAT
GGCTTCAGAGAGGATACATGGCAAACCACCTGTTAATCATTTCGAGGCAT
TCCTTAGGCTTGTACTCTGGAGCTGTATGACCTGCTCCCTTTACTGTGGC
AAATGTCAAACGGTAAAGGTTCTTTTCAGCATACCGCATCCAAAATCCTG
CAACTTGGCCGTCCACAAGCCATGGCTGCCAGCCACTATCAATCGTCAAA
TTTAATGACTTAATCCATGTTTCTGTGCCTACATATGGAATTTCCATGTC
CACATCGCCACTGTAAATCAAAACTTGGTAGCCCTTCTTGATGAGGTTGC
GATGATAATCAAGACTACTAAGGACATTTGTTGTGTAAGATAAACTCTTA
TTGCATCTCCTCCATTCTTTTACCATCCCCTCCTGAATTCCAAGAGCCCT
TTGGACAGATTTGTCATTTGCCCATGTTGGAGCGTATAAATAGTTTTGAT
GCCGACACCAAAGTTTTGGAGCTGGCTGAGCTGGCAAAAAGAGCAAATCT
AAATAATCTTCTTCATCTTCCACGACGCTACCATCTCGGGGGCTCAATCG
TGTTGGTTTTGGGGA
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