CF836282

Overview
NameCF836282
Unique NameCF836282
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length656
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10655 contig Csv1_Contig10655:115..770. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF836282 vs. ExPASy Swiss-Prot
Match: SSP1_NEUCR (Peptidyl-prolyl cis-trans isomerase ssp-1 OS=Neurospora crassa GN=ssp-1 PE=1 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 4.244e-14
Identity = 44/112 (39.29%), Postives = 63/112 (56.25%), Query Frame = -1 
Query:  267 QVRASHILIKHQGFRRKASWKDPEGRVISNPPRESAVFQLQAIREDIVSGKAKFDEVAFRLSDCSSAKRXXXXXXXXXGQMQNPFEEATYNLKIGEISEVVDTDSGVPLIMR 602
            ++R +H+L+KH   RR +SW++ E        ++ A+  LQ   + I SG     E+A   SDCSSA++         G MQ  FE+A + LK GEIS +VDT SG+ LI R
Sbjct:   73 KIRCAHLLVKHNQSRRPSSWRESE----ITRTKQEALTTLQGFEQRIKSGSISLGELALTESDCSSARKRGDLGYFGRGDMQKEFEDAAFALKPGEISGIVDTASGLHLIER 180
[Close]
BLAST of CF836282 vs. ExPASy Swiss-Prot
Match: ESS1_YEAST (Peptidyl-prolyl cis-trans isomerase ESS1 OS=Saccharomyces cerevisiae GN=ESS1 PE=1 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 8.850e-12
Identity = 47/116 (40.52%), Postives = 67/116 (57.76%), Query Frame = -1 
Query:  261 QVRASHILIKHQGFRRKASWKDPEGRVISNPPRESAVFQLQAI--REDIVSGKAKFDEVAFRLSDCSSAKRXXXXXXXXXGQMQNPFEEATYNLKIGEISEVVDTDSGVPLIMRTG 602
            +VR  HILIKH+  RR AS +  E   IS   ++ A  +L+ +  R D  S    F+ +A   SDCSS KR         G+MQ  FE+A + LK+GE+S++V++ SGV +I R G
Sbjct:   59 RVRCLHILIKHKDSRRPASHRS-ENITIS---KQDATDELKTLITRLDDDSKTNSFEALAKERSDCSSYKRGGDLGWFGRGEMQPSFEDAAFQLKVGEVSDIVESGSGVHVIKRVG 170
The following BLAST results are available for this feature:
BLAST of CF836282 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
SSP1_NEUCR4.244e-1439.29Peptidyl-prolyl cis-trans isomerase ssp-1 OS=Neuro... [more]
ESS1_YEAST8.850e-1240.52Peptidyl-prolyl cis-trans isomerase ESS1 OS=Saccha... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02L12_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02L12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836282 ID=CF836282; Name=CF836282; organism=Citrus sinensis; type=EST; length=656bp
TTTTTTTTTTTTTTTTTGAAACCAAACCATGGGAATTTTTTGGAGTCATT
CAAGCAAATCCCAAACCCCAATCAGCCATGGATAAACTACATGCTTTAAA
AAAACAACTCCCACGAGCCAAATATAGCATGGCTCCCCCGCATTATCATA
AAAAAACCAACATTCCTCTGAAGTAAAACCAACGACAACATTCTTGAATA
TGTTTCCAGAATATACTGAACAAATCAGTTAATCCATTATGAGCTTATCA
TTAATAATCAACCAGTCCTCATGATAAGGGGAACCCCACTATCAGTATCC
ACAACTTCACTTATCTCACCAATTTTAAGATTATATGTTGCCTCCTCAAA
AGGGTTCTGCATCTGGCCTCCACCAAAATTACCGAAATCACCGCCGCGTT
TGGCGGAGCTGCAATCGGAAAGGCGAAAGGCGACTTCATCGAACTTGGCC
TTGCCGGAAACGATGTCCTCTCGGATGGCTTGGAGTTGAAAAACGGCGCT
CTCTCTAGGGGGGTTGCTGATGACTCTACCTTCCGGATCCTTCCACGAAG
CCTTCCTTCGAAAACCTTGATGCTTGATCAAGATGTGAGATGCCCTCACC
TGATTGGCCGACGACATTTTTGGTTTCTTCTTGGGACTACTCTTATCTCT
TTCCTT
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