CF836286

Overview
NameCF836286
Unique NameCF836286
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length711
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF836286_ssr681 microsatellite CF836286_ssr681:681..698. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4561 contig Csv1_Contig4561:359..1069. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836286 vs. ExPASy Swiss-Prot
Match: EF109_ARATH (Ethylene-responsive transcription factor ERF109 OS=Arabidopsis thaliana GN=ERF109 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.388e-21
Identity = 44/67 (65.67%), Postives = 56/67 (83.58%), Query Frame = 1
Query:   13 IKPKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFP 213
            I+ ++ +KN YRG+RQRPWGK+AAEIRDP++  RVWLGTF TAE+AARAYD+ A   RG +AK+NFP
Sbjct:  126 IRKRKNKKNGYRGVRQRPWGKFAAEIRDPKRATRVWLGTFETAEDAARAYDRAAIGFRGPRAKLNFP 192          
BLAST of CF836286 vs. ExPASy Swiss-Prot
Match: EF115_ARATH (Ethylene-responsive transcription factor ERF115 OS=Arabidopsis thaliana GN=ERF115 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.036e-21
Identity = 46/70 (65.71%), Postives = 52/70 (74.29%), Query Frame = 1
Query:   31 RKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNEEDVFTVT 240
            RK  YRG+RQRPWGKWAAEIRDP+K  RVWLGTF TAE AA AYD  A K +G KAK+NFP    + + T
Sbjct:   88 RKRHYRGVRQRPWGKWAAEIRDPQKAARVWLGTFETAEAAALAYDNAALKFKGSKAKLNFPERAQLASNT 157          
BLAST of CF836286 vs. ExPASy Swiss-Prot
Match: ABR1_ARATH (Ethylene-responsive transcription factor ABR1 OS=Arabidopsis thaliana GN=ABR1 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.036e-21
Identity = 51/91 (56.04%), Postives = 58/91 (63.74%), Query Frame = 1
Query:   28 QRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNEEDVFTVTPXXXXXXXXXXXXXXNPTPS 300
            Q +  YRG+RQRPWGKWAAEIRDP K  RVWLGTF+ AE AARAYD+ A + RG KAK+NFP  E+V  V P               PT S
Sbjct:  180 QPRRRYRGVRQRPWGKWAAEIRDPFKAARVWLGTFDNAESAARAYDEAALRFRGNKAKLNFP--ENVKLVRPASTEAQPVHQTAAQRPTQS 268          
BLAST of CF836286 vs. ExPASy Swiss-Prot
Match: EF114_ARATH (Ethylene-responsive transcription factor ERF114 OS=Arabidopsis thaliana GN=ERF114 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.190e-21
Identity = 44/61 (72.13%), Postives = 50/61 (81.97%), Query Frame = 1
Query:   31 RKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFP 213
            R+  YRG+RQRPWGKWAAEIRDP+K  RVWLGTF TAE AA AYD+ A K +G KAK+NFP
Sbjct:   86 RRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAESAALAYDEAALKFKGSKAKLNFP 146          
BLAST of CF836286 vs. ExPASy Swiss-Prot
Match: EF103_ARATH (Ethylene-responsive transcription factor 6 OS=Arabidopsis thaliana GN=ERF6 PE=2 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 7.780e-20
Identity = 47/67 (70.15%), Postives = 54/67 (80.60%), Query Frame = 1
Query:   28 QRKNLYRGIRQRPWGKWAAEIRDP-RKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNEED 225
            + K  YRG+R RPWGK+AAEIRDP R+G RVWLGTF TA EAARAYDKEA ++RG KA +NFP E D
Sbjct:  132 EEKRHYRGVRMRPWGKFAAEIRDPTRRGTRVWLGTFETAIEAARAYDKEAFRLRGSKAILNFPLEVD 198          
BLAST of CF836286 vs. ExPASy Swiss-Prot
Match: ERF5_NICSY (Ethylene-responsive transcription factor 5 OS=Nicotiana sylvestris GN=ERF5 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.327e-19
Identity = 47/63 (74.60%), Postives = 53/63 (84.13%), Query Frame = 1
Query:   34 KNLYRGIRQRPWGKWAAEIRDP-RKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNE 219
            K  YRG+RQRPWGK+AAEIRDP RKG RVWLGTF+TA EAA+AYD+ A K+RG KA VNFP E
Sbjct:  135 KKHYRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDTAIEAAKAYDRAAYKLRGSKAIVNFPLE 197          
BLAST of CF836286 vs. ExPASy Swiss-Prot
Match: ERF5_TOBAC (Ethylene-responsive transcription factor 5 OS=Nicotiana tabacum GN=ERF5 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.733e-19
Identity = 47/63 (74.60%), Postives = 53/63 (84.13%), Query Frame = 1
Query:   34 KNLYRGIRQRPWGKWAAEIRDP-RKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNE 219
            K  YRG+RQRPWGK+AAEIRDP RKG RVWLGTF+TA EAA+AYD+ A K+RG KA VNFP E
Sbjct:  142 KKHYRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDTAIEAAKAYDRAAFKLRGSKAIVNFPLE 204          
BLAST of CF836286 vs. ExPASy Swiss-Prot
Match: ERF80_ARATH (Ethylene-responsive transcription factor 9 OS=Arabidopsis thaliana GN=ERF9 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.956e-19
Identity = 44/65 (67.69%), Postives = 52/65 (80.00%), Query Frame = 1
Query:   43 YRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNEEDVFTV 237
            +RG+R+RPWG++AAEIRDP K  RVWLGTF+TAEEAARAYD  AR+ RG KAK NFP   +  TV
Sbjct:   33 FRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAAREFRGSKAKTNFPLPGESTTV 97          
BLAST of CF836286 vs. ExPASy Swiss-Prot
Match: ERF78_ARATH (Ethylene-responsive transcription factor 4 OS=Arabidopsis thaliana GN=ERF4 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.956e-19
Identity = 43/57 (75.44%), Postives = 48/57 (84.21%), Query Frame = 1
Query:   43 YRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFP 213
            YRG+R+RPWG++AAEIRDP K  RVWLGTF+TAEEAARAYD  AR  RG KAK NFP
Sbjct:   25 YRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAARDFRGAKAKTNFP 81          
BLAST of CF836286 vs. ExPASy Swiss-Prot
Match: ERF4_TOBAC (Ethylene-responsive transcription factor 4 OS=Nicotiana tabacum GN=ERF4 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.043e-19
Identity = 42/58 (72.41%), Postives = 50/58 (86.21%), Query Frame = 1
Query:   43 YRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPN 216
            YRG+R+RPWG++AAEIRDP K  RVWLGTF+TAEEAA+AYD  AR+ RG KAK NFP+
Sbjct:   27 YRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAAKAYDTAAREFRGPKAKTNFPS 84          
The following BLAST results are available for this feature:
BLAST of CF836286 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 133
Match NameE-valueIdentityDescription
EF109_ARATH5.388e-2165.67Ethylene-responsive transcription factor ERF109 OS... [more]
EF115_ARATH7.036e-2165.71Ethylene-responsive transcription factor ERF115 OS... [more]
ABR1_ARATH7.036e-2156.04Ethylene-responsive transcription factor ABR1 OS=A... [more]
EF114_ARATH9.190e-2172.13Ethylene-responsive transcription factor ERF114 OS... [more]
EF103_ARATH7.780e-2070.15Ethylene-responsive transcription factor 6 OS=Arab... [more]
ERF5_NICSY1.327e-1974.60Ethylene-responsive transcription factor 5 OS=Nico... [more]
ERF5_TOBAC1.733e-1974.60Ethylene-responsive transcription factor 5 OS=Nico... [more]
ERF80_ARATH2.956e-1967.69Ethylene-responsive transcription factor 9 OS=Arab... [more]
ERF78_ARATH2.956e-1975.44Ethylene-responsive transcription factor 4 OS=Arab... [more]
ERF4_TOBAC5.043e-1972.41Ethylene-responsive transcription factor 4 OS=Nico... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02L15_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02L15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836286 ID=CF836286; Name=CF836286; organism=Citrus sinensis; type=EST; length=711bp
TTCAGGTGATCAATAAAGCCCAAGAGGCAGAGGAAGAATCTCTACAGGGG
AATAAGGCAACGCCCCTGGGGCAAATGGGCAGCTGAGATTCGTGACCCAA
GGAAAGGAGTTCGAGTCTGGCTCGGCACATTCAACACTGCCGAAGAAGCA
GCTCGAGCCTATGACAAAGAAGCCCGCAAGATTCGCGGCAAGAAAGCCAA
AGTCAACTTCCCCAACGAAGAGGACGTCTTCACCGTCACCCCTGCTGCTG
CCGCCCATGCTTACCATCATCATCAGCATAATCATAATCCCACTCCCAGT
CCCCTTCCTTCTCTTTCCCAAGAAGATCTTTTTAGTCGTAATAACTCATC
TATAAGTAGTGTTGGTTTTGGCTTGTATGGTTATGATCTGAACCCCCAGA
TTGTTACTTCTGGTGGTGACGAGAATTCCGGGACTGGTTCTGGTTCTGTT
TCAGAAGGTGGGTACGATTCCACAGAACTTATGCTGAATTGCAACCAGAA
TGTCAATGATGGTTCGTTTGCTCAAATGAAGGTGAAAGCCGAAGAACAAG
AAAAAGAAGAAAAGCGAAAAGCTGAAGAGGAAGAGAACGAAGTGCGAAAG
CTGTCTGAGGAGCTTATGGCGTACGAGAATTTCATGAAGTTCTATCAGCT
TCCGTATCTCGATGGGCAATCACCAGTGTCTAATAATAATAATAATAATA
TTAATATTAAT
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