CF836286

Overview
NameCF836286
Unique NameCF836286
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length711
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836286 vs. ExPASy Swiss-Prot
Match: ERF4_NICSY (Ethylene-responsive transcription factor 4 OS=Nicotiana sylvestris GN=ERF4 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.043e-19
Identity = 43/68 (63.24%), Postives = 54/68 (79.41%), Query Frame = 1
Query:   10 SIKPKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFP 213
            ++K    ++  YRG+R+RPWG++AAEIRDP K  RVWLGTF+TAEEAA+AYD  AR+ RG KAK NFP
Sbjct:   16 NVKTNGVKEVHYRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAAKAYDTAAREFRGPKAKTNFP 83          
BLAST of CF836286 vs. ExPASy Swiss-Prot
Match: EF105_ARATH (Ethylene-responsive transcription factor ERF105 OS=Arabidopsis thaliana GN=ERF105 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.043e-19
Identity = 45/60 (75.00%), Postives = 52/60 (86.67%), Query Frame = 1
Query:   43 YRGIRQRPWGKWAAEIRDP-RKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNE 219
            YRG+R+RPWGK+AAEIRDP +KGVRVWLGTF+TA EAAR YDK A K+RG KA +NFP E
Sbjct:   72 YRGVRRRPWGKYAAEIRDPNKKGVRVWLGTFDTAMEAARGYDKAAFKLRGSKAILNFPLE 131          
BLAST of CF836286 vs. ExPASy Swiss-Prot
Match: ERF53_ARATH (Ethylene-responsive transcription factor ERF053 OS=Arabidopsis thaliana GN=ERF053 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.601e-19
Identity = 41/58 (70.69%), Postives = 49/58 (84.48%), Query Frame = 1
Query:   40 LYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFP 213
            LYRG+RQR WGKW AEIR PR   R+WLGTF+TAEEAA AYD+EA K+RG+ A++NFP
Sbjct:  186 LYRGVRQRHWGKWVAEIRKPRNRTRLWLGTFDTAEEAAMAYDREAFKLRGETARLNFP 243          
BLAST of CF836286 vs. ExPASy Swiss-Prot
Match: ERF61_ARATH (Ethylene-responsive transcription factor ERF061 OS=Arabidopsis thaliana GN=ERF061 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.123e-18
Identity = 41/66 (62.12%), Postives = 54/66 (81.82%), Query Frame = 1
Query:   28 QRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNEED 225
            ++K LYRG+RQR WGKW AEIR P+  +RVWLGT++TAE AA AYD+ A K+RG+ A++NFPN +D
Sbjct:  131 KKKKLYRGVRQRHWGKWVAEIRLPQNRMRVWLGTYDTAEAAAYAYDRAAYKLRGEYARLNFPNLKD 196          
BLAST of CF836286 vs. ExPASy Swiss-Prot
Match: ERF82_ARATH (Ethylene-responsive transcription factor 3 OS=Arabidopsis thaliana GN=ERF3 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.467e-18
Identity = 41/57 (71.93%), Postives = 49/57 (85.96%), Query Frame = 1
Query:   43 YRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFP 213
            +RG+R+RPWG++AAEIRDP K  RVWLGTF++AEEAARAYD  AR +RG KAK NFP
Sbjct:   28 FRGVRKRPWGRFAAEIRDPWKKARVWLGTFDSAEEAARAYDSAARNLRGPKAKTNFP 84          
BLAST of CF836286 vs. ExPASy Swiss-Prot
Match: ERF76_ARATH (Ethylene-responsive transcription factor 11 OS=Arabidopsis thaliana GN=ERF11 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.916e-18
Identity = 42/57 (73.68%), Postives = 48/57 (84.21%), Query Frame = 1
Query:   43 YRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFP 213
            YRG+R+RPWG++AAEIRDP K  RVWLGTF+T EEAARAYDK A + RG KAK NFP
Sbjct:   20 YRGVRKRPWGRYAAEIRDPFKKSRVWLGTFDTPEEAARAYDKRAIEFRGAKAKTNFP 76          
BLAST of CF836286 vs. ExPASy Swiss-Prot
Match: EF102_ARATH (Ethylene-responsive transcription factor 5 OS=Arabidopsis thaliana GN=ERF5 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.916e-18
Identity = 45/65 (69.23%), Postives = 53/65 (81.54%), Query Frame = 1
Query:   28 QRKNLYRGIRQRPWGKWAAEIRDPRK-GVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNE 219
            + K  YRG+RQRPWGK+AAEIRDP K G RVWLGTF+TA EAARAYD+ A ++RG KA +NFP E
Sbjct:  151 EEKKHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAARAYDEAAFRLRGSKAILNFPLE 215          
BLAST of CF836286 vs. ExPASy Swiss-Prot
Match: RAP24_ARATH (Ethylene-responsive transcription factor RAP2-4 OS=Arabidopsis thaliana GN=RAP2-4 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.503e-18
Identity = 42/59 (71.19%), Postives = 48/59 (81.36%), Query Frame = 1
Query:   40 LYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPN 216
            LYRG+RQR WGKW AEIR PR   R+WLGTF+TAEEAA AYDK A K+RG  A++NFPN
Sbjct:  151 LYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPN 209          
BLAST of CF836286 vs. ExPASy Swiss-Prot
Match: ERF97_ARATH (Ethylene-responsive transcription factor 14 OS=Arabidopsis thaliana GN=ERF14 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.503e-18
Identity = 44/65 (67.69%), Postives = 55/65 (84.62%), Query Frame = 1
Query:   43 YRGIRQRPWGKWAAEIRDPRK-GVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNEEDVFT 234
            YRG+R+RPWGK+AAEIRD RK G RVWLGTF+TAE+AARAYD+ A  +RGK A +NFP+E ++ T
Sbjct:   20 YRGVRRRPWGKYAAEIRDSRKHGERVWLGTFDTAEDAARAYDRAAYSMRGKAAILNFPHEYNMGT 84          
BLAST of CF836286 vs. ExPASy Swiss-Prot
Match: ERF2_TOBAC (Ethylene-responsive transcription factor 2 OS=Nicotiana tabacum GN=ERF2 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.269e-18
Identity = 43/59 (72.88%), Postives = 50/59 (84.75%), Query Frame = 1
Query:   43 YRGIRQRPWGKWAAEIRDPRK-GVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPN 216
            YRG+RQRPWGK+AAEIRDP K G RVWLGT+ TAEEAA AYDK A ++RG KA +NFP+
Sbjct:   99 YRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDKAAYRMRGSKALLNFPH 157          
The following BLAST results are available for this feature:
BLAST of CF836286 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 133
Match NameE-valueIdentityDescription
ERF4_NICSY5.043e-1963.24Ethylene-responsive transcription factor 4 OS=Nico... [more]
EF105_ARATH5.043e-1975.00Ethylene-responsive transcription factor ERF105 OS... [more]
ERF53_ARATH8.601e-1970.69Ethylene-responsive transcription factor ERF053 OS... [more]
ERF61_ARATH1.123e-1862.12Ethylene-responsive transcription factor ERF061 OS... [more]
ERF82_ARATH1.467e-1871.93Ethylene-responsive transcription factor 3 OS=Arab... [more]
ERF76_ARATH1.916e-1873.68Ethylene-responsive transcription factor 11 OS=Ara... [more]
EF102_ARATH1.916e-1869.23Ethylene-responsive transcription factor 5 OS=Arab... [more]
RAP24_ARATH2.503e-1871.19Ethylene-responsive transcription factor RAP2-4 OS... [more]
ERF97_ARATH2.503e-1867.69Ethylene-responsive transcription factor 14 OS=Ara... [more]
ERF2_TOBAC3.269e-1872.88Ethylene-responsive transcription factor 2 OS=Nico... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02L15_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02L15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836286 ID=CF836286; Name=CF836286; organism=Citrus sinensis; type=EST; length=711bp
TTCAGGTGATCAATAAAGCCCAAGAGGCAGAGGAAGAATCTCTACAGGGG
AATAAGGCAACGCCCCTGGGGCAAATGGGCAGCTGAGATTCGTGACCCAA
GGAAAGGAGTTCGAGTCTGGCTCGGCACATTCAACACTGCCGAAGAAGCA
GCTCGAGCCTATGACAAAGAAGCCCGCAAGATTCGCGGCAAGAAAGCCAA
AGTCAACTTCCCCAACGAAGAGGACGTCTTCACCGTCACCCCTGCTGCTG
CCGCCCATGCTTACCATCATCATCAGCATAATCATAATCCCACTCCCAGT
CCCCTTCCTTCTCTTTCCCAAGAAGATCTTTTTAGTCGTAATAACTCATC
TATAAGTAGTGTTGGTTTTGGCTTGTATGGTTATGATCTGAACCCCCAGA
TTGTTACTTCTGGTGGTGACGAGAATTCCGGGACTGGTTCTGGTTCTGTT
TCAGAAGGTGGGTACGATTCCACAGAACTTATGCTGAATTGCAACCAGAA
TGTCAATGATGGTTCGTTTGCTCAAATGAAGGTGAAAGCCGAAGAACAAG
AAAAAGAAGAAAAGCGAAAAGCTGAAGAGGAAGAGAACGAAGTGCGAAAG
CTGTCTGAGGAGCTTATGGCGTACGAGAATTTCATGAAGTTCTATCAGCT
TCCGTATCTCGATGGGCAATCACCAGTGTCTAATAATAATAATAATAATA
TTAATATTAAT
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