CF836286

Overview
NameCF836286
Unique NameCF836286
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length711
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF836286_ssr681 microsatellite CF836286_ssr681:681..698. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4561 contig Csv1_Contig4561:359..1069. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836286 vs. ExPASy Swiss-Prot
Match: ERF58_ARATH (Ethylene-responsive transcription factor ERF058 OS=Arabidopsis thaliana GN=ERF058 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.510e-18
Identity = 41/59 (69.49%), Postives = 48/59 (81.36%), Query Frame = 1
Query:   40 LYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPN 216
            LYRG+RQR WGKW AEIR PR   R+WLGTF+TAEEAA AYDK A K+RG  A++NFP+
Sbjct:   82 LYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPD 140          
BLAST of CF836286 vs. ExPASy Swiss-Prot
Match: EF104_ARATH (Ethylene-responsive transcription factor ERF104 OS=Arabidopsis thaliana GN=ERF104 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.510e-18
Identity = 42/74 (56.76%), Postives = 58/74 (78.38%), Query Frame = 1
Query:   22 KRQRKNLYRGIRQRPWGKWAAEIRDP-RKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNEEDVFTVT 240
            K + +  YRG+R+RPWGK+AAEIRDP +KG R+WLGT++TA EA RAYD+ A ++RG+KA +NFP +  V + T
Sbjct:   81 KEEEERHYRGVRRRPWGKYAAEIRDPNKKGCRIWLGTYDTAVEAGRAYDQAAFQLRGRKAILNFPLDVRVTSET 154          
BLAST of CF836286 vs. ExPASy Swiss-Prot
Match: CRF2_ARATH (Ethylene-responsive transcription factor CRF2 OS=Arabidopsis thaliana GN=CRF2 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.510e-18
Identity = 49/106 (46.23%), Postives = 63/106 (59.43%), Query Frame = 1
Query:   43 YRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNEEDVFTVTPXXXXXXXXXXXXXXNPTPSPLPSLSQEDLFSRNNSSISS 360
            +RG+RQRPWGKWAAEIRDP K VR+WLGT+NTAEEAA  YD  A ++RG  A  N       F+VTP               P PSP+    +++  S+ + + SS
Sbjct:  122 FRGVRQRPWGKWAAEIRDPLKRVRLWLGTYNTAEEAAMVYDNAAIQLRGPDALTN-------FSVTPTTATEKKA-------PPPSPVKKKKKKNNKSKKSVTASS 213          
BLAST of CF836286 vs. ExPASy Swiss-Prot
Match: ERF83_ARATH (Ethylene-responsive transcription factor 7 OS=Arabidopsis thaliana GN=ERF7 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.242e-17
Identity = 40/57 (70.18%), Postives = 48/57 (84.21%), Query Frame = 1
Query:   43 YRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFP 213
            YRG+R+RPWG++AAEIRDP K  RVWLGTF++A +AARAYD  AR +RG KAK NFP
Sbjct:   27 YRGVRKRPWGRFAAEIRDPLKKSRVWLGTFDSAVDAARAYDTAARNLRGPKAKTNFP 83          
BLAST of CF836286 vs. ExPASy Swiss-Prot
Match: ERF77_ARATH (Ethylene-responsive transcription factor 10 OS=Arabidopsis thaliana GN=ERF10 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.242e-17
Identity = 40/64 (62.50%), Postives = 50/64 (78.12%), Query Frame = 1
Query:   22 KRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFP 213
            ++ ++  YRG+R+RPWG++AAEIRDP K  RVWLG+FNT EEAARAYD  A + RG KA  NFP
Sbjct:   46 EKSKEVRYRGVRRRPWGRYAAEIRDPVKKKRVWLGSFNTGEEAARAYDSAAIRFRGSKATTNFP 109          
BLAST of CF836286 vs. ExPASy Swiss-Prot
Match: ERF81_ARATH (Ethylene-responsive transcription factor 12 OS=Arabidopsis thaliana GN=ERF12 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.622e-17
Identity = 41/58 (70.69%), Postives = 48/58 (82.76%), Query Frame = 1
Query:   43 YRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPN 216
            YRG+R+RPWG++AAEIRDP K  RVWLGTF+T EEAA AYD  AR +RG KAK NFP+
Sbjct:   12 YRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARFLRGIKAKTNFPS 69          
BLAST of CF836286 vs. ExPASy Swiss-Prot
Match: ERF79_ARATH (Ethylene-responsive transcription factor 8 OS=Arabidopsis thaliana GN=ERF8 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.622e-17
Identity = 40/56 (71.43%), Postives = 47/56 (83.93%), Query Frame = 1
Query:   43 YRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNF 210
            YRG+R+RPWG++AAEIRDP K  RVWLGTF+TA++AARAYD  AR  RG KAK NF
Sbjct:   31 YRGVRKRPWGRYAAEIRDPVKKTRVWLGTFDTAQQAARAYDAAARDFRGVKAKTNF 86          
BLAST of CF836286 vs. ExPASy Swiss-Prot
Match: ERF55_ARATH (Ethylene-responsive transcription factor ERF055 OS=Arabidopsis thaliana GN=ERF055 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.622e-17
Identity = 40/58 (68.97%), Postives = 47/58 (81.03%), Query Frame = 1
Query:   40 LYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFP 213
            LYRG+RQR WGKW AEIR PR   R+WLGTF+TAEEAA AYD+ A K+RG  A++NFP
Sbjct:  142 LYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDRAAFKLRGDSARLNFP 199          
BLAST of CF836286 vs. ExPASy Swiss-Prot
Match: ERF57_ARATH (Ethylene-responsive transcription factor ERF057 OS=Arabidopsis thaliana GN=ERF057 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.119e-17
Identity = 39/59 (66.10%), Postives = 47/59 (79.66%), Query Frame = 1
Query:   40 LYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPN 216
            LYRG+RQR WGKW AEIR P+   R+WLGTF TA+EAA AYD+ A KIRG  A++NFP+
Sbjct:  110 LYRGVRQRQWGKWVAEIRLPKNRTRLWLGTFETAQEAALAYDQAAHKIRGDNARLNFPD 168          
BLAST of CF836286 vs. ExPASy Swiss-Prot
Match: PTI5_SOLLC (Pathogenesis-related genes transcriptional activator PTI5 OS=Solanum lycopersicum GN=PTI5 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.767e-17
Identity = 42/60 (70.00%), Postives = 50/60 (83.33%), Query Frame = 1
Query:   43 YRGIRQRPWGKWAAEIRDP-RKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNE 219
            YRG+R+RPWGK+AAEIRD  R G RVWLGTF TAEEAA AYD+ A ++RG KA +NFP+E
Sbjct:   59 YRGVRRRPWGKYAAEIRDSARHGARVWLGTFETAEEAALAYDRAAFRMRGAKALLNFPSE 118          
The following BLAST results are available for this feature:
BLAST of CF836286 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 133
Match NameE-valueIdentityDescription
ERF58_ARATH9.510e-1869.49Ethylene-responsive transcription factor ERF058 OS... [more]
EF104_ARATH9.510e-1856.76Ethylene-responsive transcription factor ERF104 OS... [more]
CRF2_ARATH9.510e-1846.23Ethylene-responsive transcription factor CRF2 OS=A... [more]
ERF83_ARATH1.242e-1770.18Ethylene-responsive transcription factor 7 OS=Arab... [more]
ERF77_ARATH1.242e-1762.50Ethylene-responsive transcription factor 10 OS=Ara... [more]
ERF81_ARATH1.622e-1770.69Ethylene-responsive transcription factor 12 OS=Ara... [more]
ERF79_ARATH1.622e-1771.43Ethylene-responsive transcription factor 8 OS=Arab... [more]
ERF55_ARATH1.622e-1768.97Ethylene-responsive transcription factor ERF055 OS... [more]
ERF57_ARATH2.119e-1766.10Ethylene-responsive transcription factor ERF057 OS... [more]
PTI5_SOLLC2.767e-1770.00Pathogenesis-related genes transcriptional activat... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02L15_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02L15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836286 ID=CF836286; Name=CF836286; organism=Citrus sinensis; type=EST; length=711bp
TTCAGGTGATCAATAAAGCCCAAGAGGCAGAGGAAGAATCTCTACAGGGG
AATAAGGCAACGCCCCTGGGGCAAATGGGCAGCTGAGATTCGTGACCCAA
GGAAAGGAGTTCGAGTCTGGCTCGGCACATTCAACACTGCCGAAGAAGCA
GCTCGAGCCTATGACAAAGAAGCCCGCAAGATTCGCGGCAAGAAAGCCAA
AGTCAACTTCCCCAACGAAGAGGACGTCTTCACCGTCACCCCTGCTGCTG
CCGCCCATGCTTACCATCATCATCAGCATAATCATAATCCCACTCCCAGT
CCCCTTCCTTCTCTTTCCCAAGAAGATCTTTTTAGTCGTAATAACTCATC
TATAAGTAGTGTTGGTTTTGGCTTGTATGGTTATGATCTGAACCCCCAGA
TTGTTACTTCTGGTGGTGACGAGAATTCCGGGACTGGTTCTGGTTCTGTT
TCAGAAGGTGGGTACGATTCCACAGAACTTATGCTGAATTGCAACCAGAA
TGTCAATGATGGTTCGTTTGCTCAAATGAAGGTGAAAGCCGAAGAACAAG
AAAAAGAAGAAAAGCGAAAAGCTGAAGAGGAAGAGAACGAAGTGCGAAAG
CTGTCTGAGGAGCTTATGGCGTACGAGAATTTCATGAAGTTCTATCAGCT
TCCGTATCTCGATGGGCAATCACCAGTGTCTAATAATAATAATAATAATA
TTAATATTAAT
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