CF836286

Overview
NameCF836286
Unique NameCF836286
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length711
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF836286_ssr681 microsatellite CF836286_ssr681:681..698. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4561 contig Csv1_Contig4561:359..1069. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836286 vs. ExPASy Swiss-Prot
Match: EF100_ARATH (Ethylene-responsive transcription factor 1A OS=Arabidopsis thaliana GN=ERF1A PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 2.767e-17
Identity = 41/58 (70.69%), Postives = 49/58 (84.48%), Query Frame = 1
Query:   43 YRGIRQRPWGKWAAEIRDPRK-GVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFP 213
            YRG+RQRPWGK+AAEIRDP K G RVWLGTF TAE+AA AYD+ A ++RG +A +NFP
Sbjct:  148 YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 205          
BLAST of CF836286 vs. ExPASy Swiss-Prot
Match: ERF1_TOBAC (Ethylene-responsive transcription factor 1 OS=Nicotiana tabacum GN=ERF1 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.720e-17
Identity = 41/59 (69.49%), Postives = 49/59 (83.05%), Query Frame = 1
Query:   43 YRGIRQRPWGKWAAEIRDPRK-GVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPN 216
            YRG+R+RPWGK+AAEIRDP K G RVWLGT+ T EEAA AYDK A ++RG KA +NFP+
Sbjct:  105 YRGVRRRPWGKFAAEIRDPAKNGARVWLGTYETDEEAAIAYDKAAYRMRGSKAHLNFPH 163          
BLAST of CF836286 vs. ExPASy Swiss-Prot
Match: CRF4_ARATH (Ethylene-responsive transcription factor CRF4 OS=Arabidopsis thaliana GN=CRF4 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.720e-17
Identity = 42/67 (62.69%), Postives = 49/67 (73.13%), Query Frame = 1
Query:   10 SIKPKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNF 210
            S+  + Q+K  YRG+RQRPWGKWAAEIRDP +  R+WLGTF TAEEAA  YD  A K+RG  A  NF
Sbjct:  108 SVSGQNQKK--YRGVRQRPWGKWAAEIRDPEQRRRIWLGTFATAEEAAIVYDNAAIKLRGPDALTNF 172          
BLAST of CF836286 vs. ExPASy Swiss-Prot
Match: ERF60_ARATH (Ethylene-responsive transcription factor ERF060 OS=Arabidopsis thaliana GN=ERF060 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.164e-17
Identity = 39/60 (65.00%), Postives = 48/60 (80.00%), Query Frame = 1
Query:   34 KNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFP 213
            + LYRG+RQR WGKW AEIR P+   R+WLGTF+TAEEAA AYD  A K+RG+ A++NFP
Sbjct:   90 QKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAAMAYDLAAYKLRGEFARLNFP 149          
BLAST of CF836286 vs. ExPASy Swiss-Prot
Match: ERF1_SOLLC (Ethylene-responsive transcription factor 1 OS=Solanum lycopersicum GN=ERF1 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.051e-17
Identity = 43/70 (61.43%), Postives = 55/70 (78.57%), Query Frame = 1
Query:   10 SIKPKRQRKNLYRGIRQRPWGKWAAEIRDPRK-GVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPN 216
            +++PK +    YRG+RQRPWGK+AAEIRDP K G RVWLGT+ +AEEAA AY K A ++RG KA +NFP+
Sbjct:   99 ALQPKGRH---YRGVRQRPWGKFAAEIRDPAKNGARVWLGTYESAEEAALAYGKAAFRMRGTKALLNFPH 165          
BLAST of CF836286 vs. ExPASy Swiss-Prot
Match: CRF6_ARATH (Ethylene-responsive transcription factor CRF6 OS=Arabidopsis thaliana GN=CRF6 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.051e-17
Identity = 42/67 (62.69%), Postives = 50/67 (74.63%), Query Frame = 1
Query:   10 SIKPKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNF 210
            S+KPK+     YRG+RQRPWGK+AAEIRDP    R+WLGTF TAEEAA AYD+ A  ++G KA  NF
Sbjct:   99 SVKPKK-----YRGVRQRPWGKFAAEIRDPSSRTRIWLGTFVTAEEAAIAYDRAAIHLKGPKALTNF 160          
BLAST of CF836286 vs. ExPASy Swiss-Prot
Match: EF101_ARATH (Ethylene-responsive transcription factor 2 OS=Arabidopsis thaliana GN=ERF2 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.051e-16
Identity = 41/58 (70.69%), Postives = 48/58 (82.76%), Query Frame = 1
Query:   43 YRGIRQRPWGKWAAEIRDPRK-GVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFP 213
            YRG+RQRPWGK+AAEIRDP K G RVWLGTF TAE+AA AYD  A ++RG +A +NFP
Sbjct:  117 YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDIAAFRMRGSRALLNFP 174          
BLAST of CF836286 vs. ExPASy Swiss-Prot
Match: ERF42_ARATH (Ethylene-responsive transcription factor ERF042 OS=Arabidopsis thaliana GN=ERF042 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.373e-16
Identity = 40/70 (57.14%), Postives = 48/70 (68.57%), Query Frame = 1
Query:   16 KPKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNEED 225
            K K + K +YRG R R WGKW +EIR+PRK  R+WLGTF TAE AARA+D  A  I+G  A +NFP   D
Sbjct:   17 KEKTKEKGVYRGARMRSWGKWVSEIREPRKKSRIWLGTFPTAEMAARAHDVAALSIKGSSAILNFPELAD 86          
BLAST of CF836286 vs. ExPASy Swiss-Prot
Match: CRF3_ARATH (Ethylene-responsive transcription factor CRF3 OS=Arabidopsis thaliana GN=CRF3 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.373e-16
Identity = 47/98 (47.96%), Postives = 57/98 (58.16%), Query Frame = 1
Query:   43 YRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNF--PNEEDVFTVTPXXXXXXXXXXXXXXNPTPSPLPSLSQEDL 330
            +RG+RQRPWGKWAAEIRDP +  R+WLGTF TAEEAA  YD  A ++RG  A  NF  P +E+     P               PT S   S ++EDL
Sbjct:  125 FRGVRQRPWGKWAAEIRDPEQRRRIWLGTFETAEEAAVVYDNAAIRLRGPDALTNFSIPPQEEEEEEEPEPVIEEKPVIMTTPTPTTSSSES-TEEDL 221          
BLAST of CF836286 vs. ExPASy Swiss-Prot
Match: ABI4_ARATH (Ethylene-responsive transcription factor ABI4 OS=Arabidopsis thaliana GN=ABI4 PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.373e-16
Identity = 50/127 (39.37%), Postives = 66/127 (51.97%), Query Frame = 1
Query:   43 YRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNEEDVFTVTPXXXXXXXXXXXXXXNPTPSPLPSLSQEDLFSRNNSSISSVG--FGLYGYDLNPQIVTSGG 417
            YRG+RQR WGKW AEIR+PRK  R WLGTF TAE+AARAYD+ A  + G +A++N          +P              +P+ S   + +   L  R  ++    G  FG YG   N  I  +GG
Sbjct:   55 YRGVRQRSWGKWVAEIREPRKRTRKWLGTFATAEDAARAYDRAAVYLYGSRAQLNLTPS------SPSSVSSSSSSVSAASSPSTSSSSTQTLRPLLPRPAAATVGGGANFGPYGIPFNNNIFLNGG 175          
The following BLAST results are available for this feature:
BLAST of CF836286 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 133
Match NameE-valueIdentityDescription
EF100_ARATH2.767e-1770.69Ethylene-responsive transcription factor 1A OS=Ara... [more]
ERF1_TOBAC4.720e-1769.49Ethylene-responsive transcription factor 1 OS=Nico... [more]
CRF4_ARATH4.720e-1762.69Ethylene-responsive transcription factor CRF4 OS=A... [more]
ERF60_ARATH6.164e-1765.00Ethylene-responsive transcription factor ERF060 OS... [more]
ERF1_SOLLC8.051e-1761.43Ethylene-responsive transcription factor 1 OS=Sola... [more]
CRF6_ARATH8.051e-1762.69Ethylene-responsive transcription factor CRF6 OS=A... [more]
EF101_ARATH1.051e-1670.69Ethylene-responsive transcription factor 2 OS=Arab... [more]
ERF42_ARATH1.373e-1657.14Ethylene-responsive transcription factor ERF042 OS... [more]
CRF3_ARATH1.373e-1647.96Ethylene-responsive transcription factor CRF3 OS=A... [more]
ABI4_ARATH1.373e-1639.37Ethylene-responsive transcription factor ABI4 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02L15_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02L15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836286 ID=CF836286; Name=CF836286; organism=Citrus sinensis; type=EST; length=711bp
TTCAGGTGATCAATAAAGCCCAAGAGGCAGAGGAAGAATCTCTACAGGGG
AATAAGGCAACGCCCCTGGGGCAAATGGGCAGCTGAGATTCGTGACCCAA
GGAAAGGAGTTCGAGTCTGGCTCGGCACATTCAACACTGCCGAAGAAGCA
GCTCGAGCCTATGACAAAGAAGCCCGCAAGATTCGCGGCAAGAAAGCCAA
AGTCAACTTCCCCAACGAAGAGGACGTCTTCACCGTCACCCCTGCTGCTG
CCGCCCATGCTTACCATCATCATCAGCATAATCATAATCCCACTCCCAGT
CCCCTTCCTTCTCTTTCCCAAGAAGATCTTTTTAGTCGTAATAACTCATC
TATAAGTAGTGTTGGTTTTGGCTTGTATGGTTATGATCTGAACCCCCAGA
TTGTTACTTCTGGTGGTGACGAGAATTCCGGGACTGGTTCTGGTTCTGTT
TCAGAAGGTGGGTACGATTCCACAGAACTTATGCTGAATTGCAACCAGAA
TGTCAATGATGGTTCGTTTGCTCAAATGAAGGTGAAAGCCGAAGAACAAG
AAAAAGAAGAAAAGCGAAAAGCTGAAGAGGAAGAGAACGAAGTGCGAAAG
CTGTCTGAGGAGCTTATGGCGTACGAGAATTTCATGAAGTTCTATCAGCT
TCCGTATCTCGATGGGCAATCACCAGTGTCTAATAATAATAATAATAATA
TTAATATTAAT
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