CF836286

Overview
NameCF836286
Unique NameCF836286
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length711
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF836286_ssr681 microsatellite CF836286_ssr681:681..698. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4561 contig Csv1_Contig4561:359..1069. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836286 vs. ExPASy Swiss-Prot
Match: ESR1_ARATH (Ethylene-responsive transcription factor ESR1 OS=Arabidopsis thaliana GN=ESR1 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.995e-16
Identity = 46/94 (48.94%), Postives = 54/94 (57.45%), Query Frame = 1
Query:   43 YRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNEEDVFTVTPXXXXXXXXXXXXXXNPTPS-PLPSLSQ 321
            YRG+R+RPWG++AAEIRDP    R WLGTF+TAE+AA AYD  AR  RG KA+ NF     V    P               P PS PL S +Q
Sbjct:   57 YRGVRRRPWGRYAAEIRDPMSKERRWLGTFDTAEQAACAYDSAARAFRGAKARTNFTYPTAVIMPEPRFSFSNKKSSPSARCPLPSLPLDSSTQ 150          
BLAST of CF836286 vs. ExPASy Swiss-Prot
Match: EF107_ARATH (Ethylene-responsive transcription factor ERF107 OS=Arabidopsis thaliana GN=ERF107 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.995e-16
Identity = 39/58 (67.24%), Postives = 49/58 (84.48%), Query Frame = 1
Query:   43 YRGIRQRPWGKWAAEIRDP-RKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFP 213
            YRG+R+RPWGK+AAEIRDP +KG R+WLGTF +  +AARAYD  A K+RG+KA +NFP
Sbjct:  107 YRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESDIDAARAYDYAAFKLRGRKAVLNFP 164          
BLAST of CF836286 vs. ExPASy Swiss-Prot
Match: EF106_ARATH (Ethylene-responsive transcription factor ERF106 OS=Arabidopsis thaliana GN=ERF106 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.995e-16
Identity = 39/58 (67.24%), Postives = 49/58 (84.48%), Query Frame = 1
Query:   43 YRGIRQRPWGKWAAEIRDP-RKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFP 213
            YRG+R+RPWGK+AAEIRDP +KG R+WLGTF +  +AARAYD  A K+RG+KA +NFP
Sbjct:  110 YRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESDVDAARAYDCAAFKLRGRKAVLNFP 167          
BLAST of CF836286 vs. ExPASy Swiss-Prot
Match: DRE2G_ARATH (Dehydration-responsive element-binding protein 2G OS=Arabidopsis thaliana GN=DREB2G PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.995e-16
Identity = 35/55 (63.64%), Postives = 46/55 (83.64%), Query Frame = 1
Query:   43 YRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVN 207
            +RG+RQR WGKW AEIR+P +G R+WLGTFNT+ EAA AYD+ A+K+ G +AK+N
Sbjct:   34 FRGVRQRTWGKWVAEIREPNRGTRLWLGTFNTSVEAAMAYDEAAKKLYGHEAKLN 88          
BLAST of CF836286 vs. ExPASy Swiss-Prot
Match: DRE2D_ARATH (Dehydration-responsive element-binding protein 2D OS=Arabidopsis thaliana GN=DREB2D PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.995e-16
Identity = 35/57 (61.40%), Postives = 45/57 (78.95%), Query Frame = 1
Query:   43 YRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFP 213
            Y+G+RQR WGKW AEIR+P +G R+WLGTF+T+ EAA AYD  ARK+ G +A +N P
Sbjct:   42 YKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSREAALAYDSAARKLYGPEAHLNLP 98          
BLAST of CF836286 vs. ExPASy Swiss-Prot
Match: ERF91_ARATH (Ethylene-responsive transcription factor ERF091 OS=Arabidopsis thaliana GN=ERF091 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.218e-16
Identity = 44/61 (72.13%), Postives = 49/61 (80.33%), Query Frame = 1
Query:   43 YRGIRQRPWGKWAAEIRDP-RKGVRVWLGTFNTAEEAARAYDKEARKIRG-KKAKVNFPNE 219
            YRG+R+RPWGK+AAEIRD  R GVRVWLGTF TAEEAA AYDK A +IRG +KA  NF  E
Sbjct:  110 YRGVRKRPWGKFAAEIRDSTRNGVRVWLGTFQTAEEAAMAYDKAAVRIRGTQKAHTNFQLE 170          
BLAST of CF836286 vs. ExPASy Swiss-Prot
Match: ERF62_ARATH (Ethylene-responsive transcription factor ERF062 OS=Arabidopsis thaliana GN=ERF062 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.218e-16
Identity = 39/59 (66.10%), Postives = 45/59 (76.27%), Query Frame = 1
Query:   40 LYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPN 216
            LYRG+RQR WGKW AEIR PR   RVWLGTF TAE+AA AYD  A  +RG+ A +NFP+
Sbjct:  231 LYRGVRQRHWGKWVAEIRLPRNRTRVWLGTFETAEQAAMAYDTAAYILRGEFAHLNFPD 289          
BLAST of CF836286 vs. ExPASy Swiss-Prot
Match: ERF84_ARATH (Ethylene-responsive transcription factor ERF084 OS=Arabidopsis thaliana GN=ERF084 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.815e-16
Identity = 38/61 (62.30%), Postives = 47/61 (77.05%), Query Frame = 1
Query:   28 QRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNF 210
            Q+   + G+R+RPWG+W+AEIRD     R WLGTF+TAEEAARAYD  AR++RG KAK NF
Sbjct:  111 QKTGGFMGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRLRGTKAKTNF 171          
BLAST of CF836286 vs. ExPASy Swiss-Prot
Match: DRE2A_ARATH (Dehydration-responsive element-binding protein 2A OS=Arabidopsis thaliana GN=DREB2A PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.901e-16
Identity = 35/60 (58.33%), Postives = 47/60 (78.33%), Query Frame = 1
Query:   43 YRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNEE 222
            +RG+RQR WGKW AEIR+P +G R+WLGTF TA+EAA AYD+ A+ + G  A++NFP  +
Sbjct:   79 FRGVRQRIWGKWVAEIREPNRGSRLWLGTFPTAQEAASAYDEAAKAMYGPLARLNFPRSD 138          
BLAST of CF836286 vs. ExPASy Swiss-Prot
Match: ERF94_ARATH (Ethylene-responsive transcription factor ERF094 OS=Arabidopsis thaliana GN=ERF094 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.163e-15
Identity = 39/63 (61.90%), Postives = 50/63 (79.37%), Query Frame = 1
Query:   28 QRKNLYRGIRQRPWGKWAAEIRDP-RKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFP 213
            + +  YRG+R+RPWGK+AAEIRD  RKG+RVWLGTF+TAE AA AYD+ A  ++G  A +NFP
Sbjct:   77 EEEKSYRGVRKRPWGKFAAEIRDSTRKGIRVWLGTFDTAEAAALAYDQAAFALKGSLAVLNFP 139          
The following BLAST results are available for this feature:
BLAST of CF836286 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 133
Match NameE-valueIdentityDescription
ESR1_ARATH3.995e-1648.94Ethylene-responsive transcription factor ESR1 OS=A... [more]
EF107_ARATH3.995e-1667.24Ethylene-responsive transcription factor ERF107 OS... [more]
EF106_ARATH3.995e-1667.24Ethylene-responsive transcription factor ERF106 OS... [more]
DRE2G_ARATH3.995e-1663.64Dehydration-responsive element-binding protein 2G ... [more]
DRE2D_ARATH3.995e-1661.40Dehydration-responsive element-binding protein 2D ... [more]
ERF91_ARATH5.218e-1672.13Ethylene-responsive transcription factor ERF091 OS... [more]
ERF62_ARATH5.218e-1666.10Ethylene-responsive transcription factor ERF062 OS... [more]
ERF84_ARATH6.815e-1662.30Ethylene-responsive transcription factor ERF084 OS... [more]
DRE2A_ARATH8.901e-1658.33Dehydration-responsive element-binding protein 2A ... [more]
ERF94_ARATH1.163e-1561.90Ethylene-responsive transcription factor ERF094 OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02L15_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02L15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836286 ID=CF836286; Name=CF836286; organism=Citrus sinensis; type=EST; length=711bp
TTCAGGTGATCAATAAAGCCCAAGAGGCAGAGGAAGAATCTCTACAGGGG
AATAAGGCAACGCCCCTGGGGCAAATGGGCAGCTGAGATTCGTGACCCAA
GGAAAGGAGTTCGAGTCTGGCTCGGCACATTCAACACTGCCGAAGAAGCA
GCTCGAGCCTATGACAAAGAAGCCCGCAAGATTCGCGGCAAGAAAGCCAA
AGTCAACTTCCCCAACGAAGAGGACGTCTTCACCGTCACCCCTGCTGCTG
CCGCCCATGCTTACCATCATCATCAGCATAATCATAATCCCACTCCCAGT
CCCCTTCCTTCTCTTTCCCAAGAAGATCTTTTTAGTCGTAATAACTCATC
TATAAGTAGTGTTGGTTTTGGCTTGTATGGTTATGATCTGAACCCCCAGA
TTGTTACTTCTGGTGGTGACGAGAATTCCGGGACTGGTTCTGGTTCTGTT
TCAGAAGGTGGGTACGATTCCACAGAACTTATGCTGAATTGCAACCAGAA
TGTCAATGATGGTTCGTTTGCTCAAATGAAGGTGAAAGCCGAAGAACAAG
AAAAAGAAGAAAAGCGAAAAGCTGAAGAGGAAGAGAACGAAGTGCGAAAG
CTGTCTGAGGAGCTTATGGCGTACGAGAATTTCATGAAGTTCTATCAGCT
TCCGTATCTCGATGGGCAATCACCAGTGTCTAATAATAATAATAATAATA
TTAATATTAAT
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