CF836286

Overview
NameCF836286
Unique NameCF836286
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length711
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF836286_ssr681 microsatellite CF836286_ssr681:681..698. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4561 contig Csv1_Contig4561:359..1069. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836286 vs. ExPASy Swiss-Prot
Match: ERF92_ARATH (Ethylene-responsive transcription factor 1B OS=Arabidopsis thaliana GN=ERF1B PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.983e-15
Identity = 40/66 (60.61%), Postives = 50/66 (75.76%), Query Frame = 1
Query:   25 RQRKNLYRGIRQRPWGKWAAEIRDP-RKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNE 219
            R+ +  YRG+R+RPWGK+AAEIRD  R G+RVWLGTF +AEEAA AYD+ A  +RG  A +NF  E
Sbjct:   76 RKSEKSYRGVRRRPWGKFAAEIRDSTRNGIRVWLGTFESAEEAALAYDQAAFSMRGSSAILNFSAE 141          
BLAST of CF836286 vs. ExPASy Swiss-Prot
Match: DRE2F_ARATH (Dehydration-responsive element-binding protein 2F OS=Arabidopsis thaliana GN=DREB2F PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.983e-15
Identity = 36/58 (62.07%), Postives = 45/58 (77.59%), Query Frame = 1
Query:   43 YRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPN 216
            YRG+RQR WGKW AEIR+P+K  R+WLG+F TAEEAA AYD+ A K+ G  A +N P+
Sbjct:   28 YRGVRQRTWGKWVAEIREPKKRARLWLGSFATAEEAAMAYDEAALKLYGHDAYLNLPH 85          
BLAST of CF836286 vs. ExPASy Swiss-Prot
Match: CRF5_ARATH (Ethylene-responsive transcription factor CRF5 OS=Arabidopsis thaliana GN=CRF5 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.983e-15
Identity = 37/56 (66.07%), Postives = 44/56 (78.57%), Query Frame = 1
Query:   43 YRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNF 210
            YRG+RQRPWGK+AAEIRDP    R+WLGTF TAEEAA  YD+ A +I+G  A+ NF
Sbjct:   99 YRGVRQRPWGKFAAEIRDPSSRTRLWLGTFATAEEAAIGYDRAAIRIKGHNAQTNF 154          
BLAST of CF836286 vs. ExPASy Swiss-Prot
Match: ESR2_ARATH (Ethylene-responsive transcription factor ESR2 OS=Arabidopsis thaliana GN=ESR2 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.590e-15
Identity = 38/56 (67.86%), Postives = 45/56 (80.36%), Query Frame = 1
Query:   43 YRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNF 210
            YRG+R+RPWG++AAEIRDP    R WLGTF+TAEEAA AYD  AR +RG KA+ NF
Sbjct:   58 YRGVRRRPWGRYAAEIRDPLSKERRWLGTFDTAEEAACAYDCAARAMRGLKARTNF 113          
BLAST of CF836286 vs. ExPASy Swiss-Prot
Match: ERF43_ARATH (Ethylene-responsive transcription factor ERF043 OS=Arabidopsis thaliana GN=ERF043 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.590e-15
Identity = 36/66 (54.55%), Postives = 47/66 (71.21%), Query Frame = 1
Query:   16 KPKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFP 213
            K +  ++ +YRG+R R WGKW +EIR+PRK  R+WLGTF TAE A RA+D  A  I+G  A +NFP
Sbjct:   10 KKENNKQPVYRGVRMRSWGKWVSEIREPRKKSRIWLGTFPTAEMAMRAHDVAAMSIKGTSAILNFP 75          
BLAST of CF836286 vs. ExPASy Swiss-Prot
Match: RA210_ARATH (Ethylene-responsive transcription factor RAP2-10 OS=Arabidopsis thaliana GN=RAP2-10 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.382e-15
Identity = 38/72 (52.78%), Postives = 48/72 (66.67%), Query Frame = 1
Query:   25 RQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNEEDVFTVT 240
            R+R   Y+GIR R WGKW AEIR+P K  R+WLG+++T E AARAYD     +RG  A++NFP      TVT
Sbjct:   24 RKRDKPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPEAAARAYDTAVFYLRGPSARLNFPELLAGVTVT 95          
BLAST of CF836286 vs. ExPASy Swiss-Prot
Match: DREB3_ARATH (Dehydration-responsive element-binding protein 3 OS=Arabidopsis thaliana GN=DREB3 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.382e-15
Identity = 41/76 (53.95%), Postives = 50/76 (65.79%), Query Frame = 1
Query:   16 KPKRQRKN----LYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNEEDVF 231
            K KR R +    +YRG+R R WGKW +EIR+PRK  R+WLGTF T E AARA+D  A  I+G  A +NFP   D F
Sbjct:   38 KTKRGRDSGKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGTAAILNFPELADSF 113          
BLAST of CF836286 vs. ExPASy Swiss-Prot
Match: DRE2A_ORYSJ (Dehydration-responsive element-binding protein 2A OS=Oryza sativa subsp. japonica GN=DREB2A PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.382e-15
Identity = 36/56 (64.29%), Postives = 44/56 (78.57%), Query Frame = 1
Query:   43 YRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNF 210
            YRG+RQR WGKW AEIR+P +G R+WLG+F TA EAA AYD+ AR + G  A+VNF
Sbjct:   76 YRGVRQRTWGKWVAEIREPNRGRRLWLGSFPTALEAAHAYDEAARAMYGPTARVNF 131          
BLAST of CF836286 vs. ExPASy Swiss-Prot
Match: DRE2A_ORYSI (Dehydration-responsive element-binding protein 2A OS=Oryza sativa subsp. indica GN=DREB2A PE=3 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 3.382e-15
Identity = 36/56 (64.29%), Postives = 44/56 (78.57%), Query Frame = 1
Query:   43 YRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNF 210
            YRG+RQR WGKW AEIR+P +G R+WLG+F TA EAA AYD+ AR + G  A+VNF
Sbjct:   76 YRGVRQRTWGKWVAEIREPNRGRRLWLGSFPTALEAAHAYDEAARAMYGPTARVNF 131          
BLAST of CF836286 vs. ExPASy Swiss-Prot
Match: RAP29_ARATH (Ethylene-responsive transcription factor RAP2-9 OS=Arabidopsis thaliana GN=RAP2-9 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.418e-15
Identity = 38/72 (52.78%), Postives = 47/72 (65.28%), Query Frame = 1
Query:   16 KPKRQ----RKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNE 219
            KPKR      +  Y+GIR R WGKW AEIR+P K  R+WLG++ TA  AARAYD     +RG  A++NFP E
Sbjct:   23 KPKRNLISSNEKRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYKTAVAAARAYDTAVFYLRGPSARLNFPEE 94          
The following BLAST results are available for this feature:
BLAST of CF836286 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 133
Match NameE-valueIdentityDescription
ERF92_ARATH1.983e-1560.61Ethylene-responsive transcription factor 1B OS=Ara... [more]
DRE2F_ARATH1.983e-1562.07Dehydration-responsive element-binding protein 2F ... [more]
CRF5_ARATH1.983e-1566.07Ethylene-responsive transcription factor CRF5 OS=A... [more]
ESR2_ARATH2.590e-1567.86Ethylene-responsive transcription factor ESR2 OS=A... [more]
ERF43_ARATH2.590e-1554.55Ethylene-responsive transcription factor ERF043 OS... [more]
RA210_ARATH3.382e-1552.78Ethylene-responsive transcription factor RAP2-10 O... [more]
DREB3_ARATH3.382e-1553.95Dehydration-responsive element-binding protein 3 O... [more]
DRE2A_ORYSJ3.382e-1564.29Dehydration-responsive element-binding protein 2A ... [more]
DRE2A_ORYSI3.382e-1564.29Dehydration-responsive element-binding protein 2A ... [more]
RAP29_ARATH4.418e-1552.78Ethylene-responsive transcription factor RAP2-9 OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02L15_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02L15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836286 ID=CF836286; Name=CF836286; organism=Citrus sinensis; type=EST; length=711bp
TTCAGGTGATCAATAAAGCCCAAGAGGCAGAGGAAGAATCTCTACAGGGG
AATAAGGCAACGCCCCTGGGGCAAATGGGCAGCTGAGATTCGTGACCCAA
GGAAAGGAGTTCGAGTCTGGCTCGGCACATTCAACACTGCCGAAGAAGCA
GCTCGAGCCTATGACAAAGAAGCCCGCAAGATTCGCGGCAAGAAAGCCAA
AGTCAACTTCCCCAACGAAGAGGACGTCTTCACCGTCACCCCTGCTGCTG
CCGCCCATGCTTACCATCATCATCAGCATAATCATAATCCCACTCCCAGT
CCCCTTCCTTCTCTTTCCCAAGAAGATCTTTTTAGTCGTAATAACTCATC
TATAAGTAGTGTTGGTTTTGGCTTGTATGGTTATGATCTGAACCCCCAGA
TTGTTACTTCTGGTGGTGACGAGAATTCCGGGACTGGTTCTGGTTCTGTT
TCAGAAGGTGGGTACGATTCCACAGAACTTATGCTGAATTGCAACCAGAA
TGTCAATGATGGTTCGTTTGCTCAAATGAAGGTGAAAGCCGAAGAACAAG
AAAAAGAAGAAAAGCGAAAAGCTGAAGAGGAAGAGAACGAAGTGCGAAAG
CTGTCTGAGGAGCTTATGGCGTACGAGAATTTCATGAAGTTCTATCAGCT
TCCGTATCTCGATGGGCAATCACCAGTGTCTAATAATAATAATAATAATA
TTAATATTAAT
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