CF836286

Overview
NameCF836286
Unique NameCF836286
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length711
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF836286_ssr681 microsatellite CF836286_ssr681:681..698. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4561 contig Csv1_Contig4561:359..1069. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836286 vs. ExPASy Swiss-Prot
Match: ERF10_ARATH (Ethylene-responsive transcription factor ERF010 OS=Arabidopsis thaliana GN=ERF010 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.285e-14
Identity = 35/63 (55.56%), Postives = 45/63 (71.43%), Query Frame = 1
Query:   25 RQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFP 213
            R+R   Y+GIR R WGKW AEIR+P K  R+WLG+++T E AARAYD     +RG  A++NFP
Sbjct:   15 RKRDRPYKGIRMRKWGKWVAEIREPNKRSRLWLGSYSTPEAAARAYDTAVFYLRGPTARLNFP 77          
BLAST of CF836286 vs. ExPASy Swiss-Prot
Match: ERF03_ARATH (Ethylene-responsive transcription factor ERF003 OS=Arabidopsis thaliana GN=ERF003 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.285e-14
Identity = 34/57 (59.65%), Postives = 43/57 (75.44%), Query Frame = 1
Query:   43 YRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFP 213
            +RG+RQR WG W +EIR P    R+WLGTF TAE+AARAYD+ AR + G +A+ NFP
Sbjct:    8 FRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFP 64          
BLAST of CF836286 vs. ExPASy Swiss-Prot
Match: ERF87_ARATH (Ethylene-responsive transcription factor ERF087 OS=Arabidopsis thaliana GN=ERF087 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.679e-14
Identity = 36/56 (64.29%), Postives = 44/56 (78.57%), Query Frame = 1
Query:   43 YRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNF 210
            Y G+R+RPWG++AAEIR+P    R WLGTF+TAEEAA AYD+ AR IRG  A+ NF
Sbjct:   39 YVGVRRRPWGRYAAEIRNPTTKERYWLGTFDTAEEAALAYDRAARSIRGLTARTNF 94          
BLAST of CF836286 vs. ExPASy Swiss-Prot
Match: ERF38_ARATH (Ethylene-responsive transcription factor ERF038 OS=Arabidopsis thaliana GN=ERF038 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.679e-14
Identity = 34/57 (59.65%), Postives = 44/57 (77.19%), Query Frame = 1
Query:   43 YRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFP 213
            +RG+R R WGKW +EIR+P+K  R+WLGTF+TAE AARA+D  A  I+G  A +NFP
Sbjct:   45 FRGVRMRQWGKWVSEIREPKKKSRIWLGTFSTAEMAARAHDVAALAIKGGSAHLNFP 101          
BLAST of CF836286 vs. ExPASy Swiss-Prot
Match: ERF34_ARATH (Ethylene-responsive transcription factor ERF034 OS=Arabidopsis thaliana GN=ERF034 PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.679e-14
Identity = 35/57 (61.40%), Postives = 43/57 (75.44%), Query Frame = 1
Query:   43 YRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFP 213
            YRG+R R WGKW +EIR+PRK  R+WLGT+ TAE AARA+D  A  I+G  A +NFP
Sbjct:  100 YRGVRMRSWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGTTAYLNFP 156          
BLAST of CF836286 vs. ExPASy Swiss-Prot
Match: TINY_ARATH (Ethylene-responsive transcription factor TINY OS=Arabidopsis thaliana GN=TINY PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.740e-14
Identity = 34/59 (57.63%), Postives = 45/59 (76.27%), Query Frame = 1
Query:   40 LYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPN 216
            +YRG+R+R WGKW +EIR+PRK  R+WLGTF + E AARA+D  A  I+G  A +NFP+
Sbjct:   35 VYRGVRKRNWGKWVSEIREPRKKSRIWLGTFPSPEMAARAHDVAALSIKGASAILNFPD 93          
BLAST of CF836286 vs. ExPASy Swiss-Prot
Match: RA211_ARATH (Ethylene-responsive transcription factor RAP2-11 OS=Arabidopsis thaliana GN=RAP2-11 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.740e-14
Identity = 35/61 (57.38%), Postives = 44/61 (72.13%), Query Frame = 1
Query:   34 KNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPN 216
            K  + G+RQRP GKW AEI+D  + +R+WLGTF TAEEAARAYD+ A  +RG   + NF N
Sbjct:   19 KTKFVGVRQRPSGKWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACLLRGSNTRTNFAN 79          
BLAST of CF836286 vs. ExPASy Swiss-Prot
Match: ERF35_ARATH (Ethylene-responsive transcription factor ERF035 OS=Arabidopsis thaliana GN=ERF035 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.740e-14
Identity = 34/57 (59.65%), Postives = 42/57 (73.68%), Query Frame = 1
Query:   43 YRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFP 213
            YRG+R R WGKW +EIR+PRK  R+WLGT+ TAE AARA+D  A  I+G    +NFP
Sbjct:   71 YRGVRMRSWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGNSGFLNFP 127          
BLAST of CF836286 vs. ExPASy Swiss-Prot
Match: ERF11_ARATH (Ethylene-responsive transcription factor ERF011 OS=Arabidopsis thaliana GN=ERF011 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.740e-14
Identity = 36/68 (52.94%), Postives = 48/68 (70.59%), Query Frame = 1
Query:   10 SIKPKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFP 213
            ++K KR+R   ++GIR R WGKW AEIR+P K  R+WLG+++T E AARAYD     +RG  A +NFP
Sbjct:   12 AVKMKRERP--FKGIRMRKWGKWVAEIREPNKRSRLWLGSYSTPEAAARAYDTAVFYLRGPTATLNFP 77          
BLAST of CF836286 vs. ExPASy Swiss-Prot
Match: DRE2H_ARATH (Putative dehydration-responsive element-binding protein 2H OS=Arabidopsis thaliana GN=DREB2H PE=5 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 3.740e-14
Identity = 36/78 (46.15%), Postives = 50/78 (64.10%), Query Frame = 1
Query:   19 PKRQRKNL-------------YRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFP 213
            PKR RK               Y G+RQR WGKW AEIR+P +G ++WLGTF+++ EAA AYD+ ++ I G+ A++N P
Sbjct:   46 PKRSRKGCMKGKGGPENGICDYTGVRQRTWGKWVAEIREPGRGAKLWLGTFSSSYEAALAYDEASKAIYGQSARLNLP 123          
The following BLAST results are available for this feature:
BLAST of CF836286 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 133
Match NameE-valueIdentityDescription
ERF10_ARATH1.285e-1455.56Ethylene-responsive transcription factor ERF010 OS... [more]
ERF03_ARATH1.285e-1459.65Ethylene-responsive transcription factor ERF003 OS... [more]
ERF87_ARATH1.679e-1464.29Ethylene-responsive transcription factor ERF087 OS... [more]
ERF38_ARATH1.679e-1459.65Ethylene-responsive transcription factor ERF038 OS... [more]
ERF34_ARATH1.679e-1461.40Ethylene-responsive transcription factor ERF034 OS... [more]
TINY_ARATH3.740e-1457.63Ethylene-responsive transcription factor TINY OS=A... [more]
RA211_ARATH3.740e-1457.38Ethylene-responsive transcription factor RAP2-11 O... [more]
ERF35_ARATH3.740e-1459.65Ethylene-responsive transcription factor ERF035 OS... [more]
ERF11_ARATH3.740e-1452.94Ethylene-responsive transcription factor ERF011 OS... [more]
DRE2H_ARATH3.740e-1446.15Putative dehydration-responsive element-binding pr... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02L15_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02L15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836286 ID=CF836286; Name=CF836286; organism=Citrus sinensis; type=EST; length=711bp
TTCAGGTGATCAATAAAGCCCAAGAGGCAGAGGAAGAATCTCTACAGGGG
AATAAGGCAACGCCCCTGGGGCAAATGGGCAGCTGAGATTCGTGACCCAA
GGAAAGGAGTTCGAGTCTGGCTCGGCACATTCAACACTGCCGAAGAAGCA
GCTCGAGCCTATGACAAAGAAGCCCGCAAGATTCGCGGCAAGAAAGCCAA
AGTCAACTTCCCCAACGAAGAGGACGTCTTCACCGTCACCCCTGCTGCTG
CCGCCCATGCTTACCATCATCATCAGCATAATCATAATCCCACTCCCAGT
CCCCTTCCTTCTCTTTCCCAAGAAGATCTTTTTAGTCGTAATAACTCATC
TATAAGTAGTGTTGGTTTTGGCTTGTATGGTTATGATCTGAACCCCCAGA
TTGTTACTTCTGGTGGTGACGAGAATTCCGGGACTGGTTCTGGTTCTGTT
TCAGAAGGTGGGTACGATTCCACAGAACTTATGCTGAATTGCAACCAGAA
TGTCAATGATGGTTCGTTTGCTCAAATGAAGGTGAAAGCCGAAGAACAAG
AAAAAGAAGAAAAGCGAAAAGCTGAAGAGGAAGAGAACGAAGTGCGAAAG
CTGTCTGAGGAGCTTATGGCGTACGAGAATTTCATGAAGTTCTATCAGCT
TCCGTATCTCGATGGGCAATCACCAGTGTCTAATAATAATAATAATAATA
TTAATATTAAT
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