CF836289

Overview
NameCF836289
Unique NameCF836289
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length717
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836289 vs. ExPASy Swiss-Prot
Match: DNJA1_BOVIN (DnaJ homolog subfamily A member 1 OS=Bos taurus GN=DNAJA1 PE=2 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 2.537e-26
Identity = 61/134 (45.52%), Postives = 88/134 (65.67%), Query Frame = -1
Query:  319 QKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFSVDFPES--LSPDQCKMLETVLPPRTSVQLTDMELDECEETTLHDVNIEEEMRR 714
            QK+H  F R+G+DLF+   + L EALCGFQ  I+ LD R ++I S PG++VK    K + +EGMP+Y+RP+ +G+L I F V+FPE+  LSPD+  +LE +LP R  V+    E DE ++  L D +  +E RR
Sbjct:  245 QKDHAVFTRRGEDLFMCMDIQLVEALCGFQKPISTLDNRTIVITSHPGQIVKHGDIKCVLNEGMPIYRRPYEKGRLIIEFKVNFPENGFLSPDKLSLLEKLLPERKEVE----ETDEMDQVELVDFDPNQERRR 374          
BLAST of CF836289 vs. ExPASy Swiss-Prot
Match: DNJA2_HUMAN (DnaJ homolog subfamily A member 2 OS=Homo sapiens GN=DNAJA2 PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.314e-26
Identity = 57/127 (44.88%), Postives = 82/127 (64.57%), Query Frame = -1
Query:  358 QQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFSVDFPES--LSPDQCKMLETVLPPRTSV-----QLTDMELDECEET 717
            Q+KEH  F+R G+DL + + + L EALCGFQF   HLDGRQ+++K  PG+V++P   + +  EGMP Y+ PF +G LYI F V FPE+  ++PD+   LE +LP R  V     +  ++EL E + T
Sbjct:  253 QEKEHEVFQRDGNDLHMTYKIGLVEALCGFQFTFKHLDGRQIVVKYPPGKVIEPGCVRVVRGEGMPQYRNPFEKGDLYIKFDVQFPENNWINPDKLSELEDLLPSRPEVPNIIGETEEVELQEFDST 379          
BLAST of CF836289 vs. ExPASy Swiss-Prot
Match: DNAJ1_CERAE (DnaJ homolog subfamily A member 1 OS=Cercopithecus aethiops GN=DNAJA1 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.314e-26
Identity = 60/134 (44.78%), Postives = 88/134 (65.67%), Query Frame = -1
Query:  319 QKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFSVDFPES--LSPDQCKMLETVLPPRTSVQLTDMELDECEETTLHDVNIEEEMRR 714
            QK+H  F R+G+DLF+   + L EALCGFQ  I+ LD R ++I S PG++VK    K + +EGMP+Y+RP+ +G+L I F ++FPE+  LSPD+  +LE +LP R  V+    E DE ++  L D +  +E RR
Sbjct:  245 QKDHAVFTRRGEDLFMCMDIQLVEALCGFQKPISTLDNRTIVITSHPGQIVKHGDIKCVLNEGMPIYRRPYEKGRLIIEFKINFPENGFLSPDKLSLLEKLLPERKEVE----ETDEMDQVELVDFDPNQERRR 374          
BLAST of CF836289 vs. ExPASy Swiss-Prot
Match: DNJA2_BOVIN (DnaJ homolog subfamily A member 2 OS=Bos taurus GN=DNAJA2 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.653e-26
Identity = 57/127 (44.88%), Postives = 81/127 (63.78%), Query Frame = -1
Query:  358 QQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFSVDFPES--LSPDQCKMLETVLPPRTSV-----QLTDMELDECEET 717
            Q+KEH  F+R G+DL + + + L EALCGFQF   HLDGRQ+++K  PG+V++P   + +  EGMP Y+ PF +G LYI F V FPE+  ++PD+   LE +LP R  V        ++EL E + T
Sbjct:  253 QEKEHEVFQRDGNDLHMTYKIGLVEALCGFQFTFKHLDGRQIVVKYPPGKVIEPGCVRVVRGEGMPQYRNPFEKGDLYIKFDVQFPENNWINPDKLSELEDLLPSRPEVPNIIGDTEEVELQEFDST 379          
BLAST of CF836289 vs. ExPASy Swiss-Prot
Match: DNJA2_RAT (DnaJ homolog subfamily A member 2 OS=Rattus norvegicus GN=Dnaja2 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.645e-25
Identity = 56/127 (44.09%), Postives = 81/127 (63.78%), Query Frame = -1
Query:  358 QQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFSVDFPES--LSPDQCKMLETVLPPRTSV-----QLTDMELDECEET 717
            Q+KEH  F+R G+DL + + + L EALCGFQF   HLD RQ+++K  PG+V++P   + +  EGMP Y+ PF +G LYI F V FPE+  ++PD+   LE +LP R  V     +  ++EL E + T
Sbjct:  253 QEKEHEVFQRDGNDLHMTYKIGLVEALCGFQFTFKHLDARQIVVKYPPGKVIEPGCVRVVRGEGMPQYRNPFEKGDLYIKFDVQFPENNWINPDKLSELEDLLPSRPEVPNVIGETEEVELQEFDST 379          
BLAST of CF836289 vs. ExPASy Swiss-Prot
Match: DNJA2_MOUSE (DnaJ homolog subfamily A member 2 OS=Mus musculus GN=Dnaja2 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.645e-25
Identity = 56/127 (44.09%), Postives = 81/127 (63.78%), Query Frame = -1
Query:  358 QQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFSVDFPES--LSPDQCKMLETVLPPRTSV-----QLTDMELDECEET 717
            Q+KEH  F+R G+DL + + + L EALCGFQF   HLD RQ+++K  PG+V++P   + +  EGMP Y+ PF +G LYI F V FPE+  ++PD+   LE +LP R  V     +  ++EL E + T
Sbjct:  253 QEKEHEVFQRDGNDLHMTYKIGLVEALCGFQFTFKHLDARQIVVKYPPGKVIEPGCVRVVRGEGMPQYRNPFEKGDLYIKFDVQFPENNWINPDKLSELEDLLPSRPEVPNVIGETEEVELQEFDST 379          
BLAST of CF836289 vs. ExPASy Swiss-Prot
Match: DNJA4_MOUSE (DnaJ homolog subfamily A member 4 OS=Mus musculus GN=Dnaja4 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.903e-22
Identity = 58/135 (42.96%), Postives = 85/135 (62.96%), Query Frame = -1
Query:  316 QKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFSVDFPES--LSPDQCKMLETVLPPRTSVQLTDMELDECEETTLHDVNIEEEMRRK 714
            QK+H  F+R+G DL ++  + L+EALCGF+  I  LD R L+I S+ GEV+K    K I +EGMP+Y+ P  +G + I F V FPE   LS ++   LE +LPPR  V++TD ++D+ E   L + N  E+  R+
Sbjct:  246 QKDHSVFQRRGQDLIMKMKIQLSEALCGFKKTIKTLDDRVLVISSKSGEVIKHGDLKCIRNEGMPIYKAPLEKGVMIIQFLVVFPEKQWLSQEKLPQLEALLPPRQKVRITD-DMDQVE---LKEFNPNEQSWRQ 376          
BLAST of CF836289 vs. ExPASy Swiss-Prot
Match: DNJA4_HUMAN (DnaJ homolog subfamily A member 4 OS=Homo sapiens GN=DNAJA4 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.447e-22
Identity = 54/119 (45.38%), Postives = 78/119 (65.55%), Query Frame = -1
Query:  364 QKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFSVDFPES--LSPDQCKMLETVLPPRTSVQLTDMELDECE 714
            QK+H  F+R+G DL ++  + L+EALCGF+  I  LD R L+I S+ GEV+K    + + DEGMP+Y+ P  +G L I F V FPE   LS ++   LE +LPPR  V++TD ++D+ E
Sbjct:  246 QKDHSVFQRRGHDLIMKMKIQLSEALCGFKKTIKTLDNRILVITSKAGEVIKHGDLRCVRDEGMPIYKAPLEKGILIIQFLVIFPEKHWLSLEKLPQLEALLPPRQKVRITD-DMDQVE 363          
BLAST of CF836289 vs. ExPASy Swiss-Prot
Match: MAS5_SCHPO (Mitochondrial protein import protein mas5 OS=Schizosaccharomyces pombe GN=SPBC1734.11 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.053e-20
Identity = 52/105 (49.52%), Postives = 65/105 (61.90%), Query Frame = -1
Query:  406 QKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFSVDFPES--LSPDQCKMLETVLPPR 714
            QKEHP+FKR GD LF E  + L  AL G Q V+ HLD R L I   PGE ++P++ K +  +GM + QR    G LYI F VDFPE    +P+Q  +LE  LPPR
Sbjct:  247 QKEHPRFKRSGDHLFYEAHVDLLTALAGGQIVVEHLDDRWLTIPIIPGECIRPNELKVLPGQGM-LSQRHHQPGNLYIRFHVDFPEPNFATPEQLALLEKALPPR 350          
BLAST of CF836289 vs. ExPASy Swiss-Prot
Match: DNJA1_DICDI (DnaJ homolog subfamily A member 1 homolog OS=Dictyostelium discoideum GN=dnaja1 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.886e-13
Identity = 39/126 (30.95%), Postives = 70/126 (55.56%), Query Frame = -1
Query:  340 QQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFSVDFPESLSPDQCKMLETVLPPRTSVQLTDMELDECEETTLHDVN 717
            ++K +  FKR GD+L     L L +++ G QF+I  LD R+L +  + G+++K    + I +EGMP+ +    +GKL I F +++P +L+ D  + L  +LP   +  ++     +C+   L  VN
Sbjct:  282 REKPNVNFKRNGDNLIYTKRLKLLDSIAGSQFIINTLDQRKLWVNHEKGDIIKQGDMRYIENEGMPI-KGTSRKGKLIIAFDIEYPSNLTNDDIEKLSKILPKAATPSVSK---SDCKSVGLSKVN 403          
The following BLAST results are available for this feature:
BLAST of CF836289 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
DNJA1_BOVIN2.537e-2645.52DnaJ homolog subfamily A member 1 OS=Bos taurus GN... [more]
DNJA2_HUMAN3.314e-2644.88DnaJ homolog subfamily A member 2 OS=Homo sapiens ... [more]
DNAJ1_CERAE3.314e-2644.78DnaJ homolog subfamily A member 1 OS=Cercopithecus... [more]
DNJA2_BOVIN5.653e-2644.88DnaJ homolog subfamily A member 2 OS=Bos taurus GN... [more]
DNJA2_RAT1.645e-2544.09DnaJ homolog subfamily A member 2 OS=Rattus norveg... [more]
DNJA2_MOUSE1.645e-2544.09DnaJ homolog subfamily A member 2 OS=Mus musculus ... [more]
DNJA4_MOUSE2.903e-2242.96DnaJ homolog subfamily A member 4 OS=Mus musculus ... [more]
DNJA4_HUMAN8.447e-2245.38DnaJ homolog subfamily A member 4 OS=Homo sapiens ... [more]
MAS5_SCHPO6.053e-2049.52Mitochondrial protein import protein mas5 OS=Schiz... [more]
DNJA1_DICDI1.886e-1330.95DnaJ homolog subfamily A member 1 homolog OS=Dicty... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02L18_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02L18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836289 ID=CF836289; Name=CF836289; organism=Citrus sinensis; type=EST; length=717bp
TTTTTTTTTTTTTTTTTATTGTAACACTAAAAATATTAATTATGAGCATT
GAGTCTGAAGGTGCAAACGCTAGAATTCCATTACATAGTCAGTTATCAGA
AAAACATAAGAATAAAGACAGACAAACCAAAACTAGAACCTCTAAAGCCT
ATAACAGAAAATAAATATGTTGAGAATCTTTTTCTCCCAAACAATGAAAA
TACTAAATCAGGCCACCCCTTTTCTTCTACATCATCACTGCTGAGCACAC
TGCACTCTCTGGGCACCACCTTGCATATCGTCATCTTCATCGTATGCCTC
CTGAGCTGCTTGTTGCTTCCTTCGCATTTCCTCCTCAATGTTCACATCAT
GCAGGGTTGTTTCTTCACACTCATCCAGTTCCATATCGGTGAGCTGGACT
GAGGTCCTTGGAGGTAGTACGGTCTCCAGCATCTTGCACTGGTCTGGGCT
CAGTGACTCAGGGAAGTCAACACTGAAATGAATGTACAGTTTGCCCCTCA
TAAATGGCCTCTGATACATAGGCATTCCTTCATCATTTATGGCCTTGAAT
TGGTCCGGCTTGACTACTTCCCCAGGCTGGGATTTGATGAGGAGTTGCCG
GCCATCCAAATGAGTTATTACAAATTGAAAGCCACAGAGAGCTTCTGTCA
GTGACAGGGTGTGCTCAACAAATAGGTCATCACCCTTTCGCTTAAATTTC
GGGTGCTCTTTCTGTTG
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