CF836291

Overview
NameCF836291
Unique NameCF836291
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length755
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1875 contig Csv1_Contig1875:172..926. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836291 vs. ExPASy Swiss-Prot
Match: PR1C_HORVU (Pathogenesis-related protein 1C OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.579e-21
Identity = 64/187 (34.22%), Postives = 83/187 (44.39%), Query Frame = -2
Query:  194 AAVP-GGGRQLDKGQTWTITAAPGTKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSPSCNRVIKCTANILGECPNELKVPGGCNGPCPVFKTDEYCCNSGNCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPSGTDYKVVFCP 751
            A +P GGG +L  GQT +I    GT+A RIWART C F+  G G C+TGDC G L C   G  P TLAE+ +   +  DF D+S IDGFN+ M+FS           C+                          D   C   +C P           P  Y +P D   +T  C    +Y++ FCP
Sbjct:   36 AGIPVGGGFELGSGQTSSINVPAGTQAGRIWARTGCSFNG-GSGSCQTGDCGGQLSCSLSGRPPATLAEFTIGGGSTQDFYDISVIDGFNLAMDFS-----------CSTG------------------------DALQCRDPSCPP-----------PQAYQHPND--VATHACSGNNNYQITFCP 173          
BLAST of CF836291 vs. ExPASy Swiss-Prot
Match: PR1A_HORVU (Pathogenesis-related protein 1A/1B OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.579e-21
Identity = 64/187 (34.22%), Postives = 83/187 (44.39%), Query Frame = -2
Query:  194 AAVP-GGGRQLDKGQTWTITAAPGTKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSPSCNRVIKCTANILGECPNELKVPGGCNGPCPVFKTDEYCCNSGNCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPSGTDYKVVFCP 751
            A +P GGG +L  GQT +I    GT+A RIWART C F+  G G C+TGDC G L C   G  P TLAE+ +   +  DF D+S IDGFN+ M+FS           C+                          D   C   +C P           P  Y +P D   +T  C    +Y++ FCP
Sbjct:   36 AGIPVGGGFELGSGQTSSINVPAGTQAGRIWARTGCSFNG-GSGSCQTGDCGGQLSCSLSGQPPATLAEFTIGGGSTQDFYDISVIDGFNLAMDFS-----------CSTG------------------------DALQCRDPSCPP-----------PQAYQHPND--VATHACSGNNNYQITFCP 173          
BLAST of CF836291 vs. ExPASy Swiss-Prot
Match: PRR3_JUNVI (Pathogenesis-related protein (Fragment) OS=Juniperus virginiana PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 1.024e-20
Identity = 44/70 (62.86%), Postives = 51/70 (72.86%), Query Frame = -2
Query:  545 AAAVPGGGRQLDKGQTWTITAAPGTKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEY 754
            AA +PGGG++LD+GQTWT+  A GT +AR W RT C FDASGKG C+TGDC   L C   GA P TLAEY
Sbjct:   34 AAGLPGGGKRLDQGQTWTVNLAAGTASARFWGRTGCTFDASGKGSCQTGDCGRQLSCTVSGAVPATLAEY 103          
BLAST of CF836291 vs. ExPASy Swiss-Prot
Match: RST4_AVESA (Thaumatin-like pathogenesis-related protein 4 OS=Avena sativa GN=RASTL-4 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.978e-20
Identity = 62/187 (33.16%), Postives = 87/187 (46.52%), Query Frame = -2
Query:  194 AAVP-GGGRQLDKGQTWTITAAPGTKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSPSCNRVIKCTANILGECPNELKVPGGCNGPCPVFKTDEYCCNSGNCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPSGTDYKVVFCP 751
            AA+P GGG+QLD+GQTWT+    GT + RIW RT C F+  G G C+TGDC G L C   G  P TLAE+++    + D+ D+S ID +N+ M+FS           C+     +C +                                       CPD Y  P D    T +C + ++Y++ FCP
Sbjct:   37 AAIPVGGGQQLDQGQTWTLNVPAGTNSGRIWGRTGCSFN-GGSGSCQTGDCAGALSCTLSG-QPATLAEFSIG--GEHDYYDISVIDVYNLAMDFS-----------CSTGDALQCRD-------------------------------------SSCPDAYHQPDD--PKTHSCNTNSNYQITFCP 169          
BLAST of CF836291 vs. ExPASy Swiss-Prot
Match: RST1_AVESA (Thaumatin-like pathogenesis-related protein 1 OS=Avena sativa GN=RASTL-1 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.580e-19
Identity = 62/187 (33.16%), Postives = 82/187 (43.85%), Query Frame = -2
Query:  194 AAVP-GGGRQLDKGQTWTITAAPGTKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSPSCNRVIKCTANILGECPNELKVPGGCNGPCPVFKTDEYCCNSGNCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPSGTDYKVVFCP 751
            A +P GGG QL+  Q+  I    GT A RIW RT C F+ +G+G C TGDC G L C   G  P TLAEY +      DF D+S IDGFN+ M+FS           C+  +  +C +                                       CPD Y +P D   +T  C   ++Y++ FCP
Sbjct:   37 AGIPVGGGFQLNSKQSSNINVPAGTSAGRIWGRTGCSFN-NGRGSCATGDCAGALSCTLSG-QPATLAEYTIG--GSQDFYDISVIDGFNLAMDFS-----------CSTGVALKCRDA-------------------------------------NCPDAYHHPND--VATHACNGNSNYQITFCP 169          
BLAST of CF836291 vs. ExPASy Swiss-Prot
Match: RST3_AVESA (Thaumatin-like pathogenesis-related protein 3 OS=Avena sativa GN=RASTL-3 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.134e-18
Identity = 65/187 (34.76%), Postives = 85/187 (45.45%), Query Frame = -2
Query:  194 AAVP-GGGRQLDKGQTWTITAAPGTKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSPSCNRVIKCTANILGECPNELKVPGGCNGPCPVFKTDEYCCNSGNCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPSGTDYKVVFCP 751
            A +P GGG QL+  Q+  I    GT A RIW RT C F+ +G+G C TGDC G L C   G  P TLAEY +      DF D+S IDG+N+ M+FS           C+  +       LK                 C +SG              CPD Y +P D   +T  C   ++Y++ FCP
Sbjct:   37 AGIPVGGGFQLNSKQSSNINVPAGTSAGRIWGRTGCSFN-NGRGSCATGDCAGALSCTLSG-QPATLAEYTIG--GSQDFYDISVIDGYNLAMDFS-----------CSTGV------ALK-----------------CRDSG--------------CPDAYHHPND--VATHACNGNSNYQITFCP 169          
BLAST of CF836291 vs. ExPASy Swiss-Prot
Match: RST2_AVESA (Thaumatin-like pathogenesis-related protein 2 OS=Avena sativa GN=RASTL-2 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.134e-18
Identity = 61/187 (32.62%), Postives = 82/187 (43.85%), Query Frame = -2
Query:  194 AAVP-GGGRQLDKGQTWTITAAPGTKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSPSCNRVIKCTANILGECPNELKVPGGCNGPCPVFKTDEYCCNSGNCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPSGTDYKVVFCP 751
            A +P GGG QL+  Q+  I    GT A RIW RT C F+ +G+G C TGDC G L C   G  P TLAEY +      DF D+S IDG+N+ M+FS           C+  +  +C +                                       CPD Y +P D   +T  C   ++Y++ FCP
Sbjct:   37 AGIPVGGGFQLNSKQSSNINVPAGTSAGRIWGRTGCSFN-NGRGSCATGDCAGALSCTLSG-QPATLAEYTIG--GSQDFYDISVIDGYNLAMDFS-----------CSTGVALKCRDA-------------------------------------NCPDAYHHPND--VATHACNGNSNYQITFCP 169          
The following BLAST results are available for this feature:
BLAST of CF836291 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
PR1C_HORVU1.579e-2134.22Pathogenesis-related protein 1C OS=Hordeum vulgare... [more]
PR1A_HORVU1.579e-2134.22Pathogenesis-related protein 1A/1B OS=Hordeum vulg... [more]
PRR3_JUNVI1.024e-2062.86Pathogenesis-related protein (Fragment) OS=Juniper... [more]
RST4_AVESA2.978e-2033.16Thaumatin-like pathogenesis-related protein 4 OS=A... [more]
RST1_AVESA9.580e-1933.16Thaumatin-like pathogenesis-related protein 1 OS=A... [more]
RST3_AVESA2.134e-1834.76Thaumatin-like pathogenesis-related protein 3 OS=A... [more]
RST2_AVESA2.134e-1832.62Thaumatin-like pathogenesis-related protein 2 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02L19_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02L19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836291 ID=CF836291; Name=CF836291; organism=Citrus sinensis; type=EST; length=755bp
TTTTTTTTTTTTTTAAGAAGCCCCATAAAATTTCAGTTATTCTCCTTTTA
ATTCACGCACATAACTACATGTGCCTGCTCCAGCTCTATGGCAGTGAAGA
CCGCACGGTCCTTATTCCAATATTATAACAAATACAGAAGACTACGTCGT
ATAGTTTTCTATTTCCATTTCTACCCCTGAAAAAAATGCTTCAGGGGCAG
AATACAACCTTGTAGTCGGTCCCACTCGGGCAAGTAAATGTGCTGGTAGC
GTCATCCTTAGGGTAACTGTAAACATCCGGGCACCTATCCTTGAAAAACT
TGGAGAAACCTGTAGGTCCGCAGTTGCCTGAATTGCAACAGTACTCGTCG
GTCTTGAACACGGGGCACGGCCCGTTACATCCTCCAGGAACCTTCAATTC
ATTAGGGCACTCGCCAAGAATGTTAGCAGTGCACTTGATCACGCGGTTGC
ATGAGGGAGAGACAGAGCTAAATTCCATGGGAACATTGAATCCGTCAATG
TTGGACATGTCAATGAAATCCATGTCATTGAATTGCTTCAACGCGTACTC
GGCCAAGGTGTTAGGTGCTGCACCGTAGCCTTGGCACTCGAGGAGTCCGT
TACAGTCACCGGTCTCGCATTTGCCTTTGCCGGAAGCATCAAACTGGCAT
TTGGTTCGAGCCCAAATGCGGGCTGCTTTTGTGCCTGGCGCGGCGGTGAT
GGTCCATGTTTGACCCTTGTCGAGTTGCCTGCCGCCTCCGGGCACAGCGG
CGGCC
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