CF836293
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF836293 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 4.940e-19 Identity = 62/162 (38.27%), Postives = 79/162 (48.77%), Query Frame = 2 Query: 239 WFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTA--GELEY------FTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTK 700 WFPG P LDGS PGDFGFDPLGL + PE +SEI HCRWAML G+ +PE L + W G+ Y + + T+ +E + I +AE +R + DP YPGG FDPLG+ S P K +EL+ K Sbjct: 48 WFPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGLGNWVKAQEWAALPDGQATYLGNPVPWGNLPTILAIEFLAIAFAEQQR--------TMEKDP---------EKKKYPGGA-FDPLGF-SKDPAKFEELKLK 190
BLAST of CF836293 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 1.101e-18 Identity = 68/187 (36.36%), Postives = 93/187 (49.73%), Query Frame = 2 Query: 182 AGTRSVSVSAAAAD---PNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTK 700 A T+ ++ SA+ + P+R L+ F G PP +L G PGD+G+D GL +DPE N + E++HCRWAMLGA G PELL + G+ W+ AG L+Y + + + ++ I WA +I G V I TD YPGG FDPLG PE EL+ K Sbjct: 44 ATTKKLTASASTSPWYGPDRVLYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPENFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAI-WA-----CQVILMGAVEGYRIAGGPLGEVTDPIYPGGS-FDPLGLAE-DPEAFAELKVK 221
BLAST of CF836293 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.437e-18 Identity = 58/162 (35.80%), Postives = 75/162 (46.30%), Query Frame = 2 Query: 239 WFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSW--YTAGELEYFTDTT------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTK 700 W PG P +LDGS PGDFGFD LGLG P L +SE++HCRWAML GI +PE L + W G+ Y T+ +E + I + E +R + + YPGG FDPLG+ S P K +EL+ K Sbjct: 49 WMPGQPRPSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEALGLGNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQR-----------------SMEKDSEKKKYPGGA-FDPLGY-SKDPAKFEELKVK 191
BLAST of CF836293 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 2.452e-18 Identity = 59/157 (37.58%), Postives = 80/157 (50.96%), Query Frame = 2 Query: 257 PPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKL-TGTDVGYPGGLWFDPLGWGSGSPEKVKELRTK 700 PP +L G PGD+G+D GL +DPET N + E++HCRWAMLGA G PELL + G+ W+ AG L+Y + + + ++ I WA +I G V + L D+ YPGG FDPLG + PE EL+ K Sbjct: 65 PPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAI-WA-----TQVILMGAVEGYRVAGEGPLGEAEDLLYPGGS-FDPLGLAT-DPEAFAELKVK 213
BLAST of CF836293 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 3.202e-18 Identity = 58/155 (37.42%), Postives = 79/155 (50.97%), Query Frame = 2 Query: 260 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTK 700 P +L G PGD+G+D GL +DPET N + E++HCRWAMLGA G PE+L+K G+ W+ AG L+Y + + ++ I WA A ++ G V + G D YPGG FDPLG + PE EL+ K Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAI-WA-----AQVVLMGFVEGYRVGGGPLGEGLDKIYPGGA-FDPLGL-ADDPEAFAELKVK 212
BLAST of CF836293 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 7.134e-18 Identity = 57/155 (36.77%), Postives = 79/155 (50.97%), Query Frame = 2 Query: 260 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTK 700 P +L G PGD+G+D GL +DPET N + E++HCRWAMLGA G PE+L+K G+ W+ AG L+Y + + ++ I WA + ++ G V + G D YPGG FDPLG + PE EL+ K Sbjct: 38 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAI-WA-----SQVVLMGFVEGYRVGGGPLGEGLDKIYPGGA-FDPLGL-ADDPEAFAELKVK 184
BLAST of CF836293 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 7.134e-18 Identity = 55/154 (35.71%), Postives = 76/154 (49.35%), Query Frame = 2 Query: 260 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGELEY------FTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTK 700 P +L G PGD+G+D GL +DPET N + E++HCRWAMLGA G PE+L+K G+ W+ AG + + L + I WA + ++ G + + G D YPGG FDPLG + PE EL+ K Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWA-----SQVVLMGLIEGYRVGGGPLGEGLDKIYPGGA-FDPLGL-ADDPEAFAELKVK 212
BLAST of CF836293 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 7.134e-18 Identity = 66/182 (36.26%), Postives = 90/182 (49.45%), Query Frame = 2 Query: 188 TRSVSVSAAAADPNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTK 700 T+ VS + P+R + F G PP +L G PGD+G+D GL +DPET N + E++H RWAMLGA G PELL++ G+ W+ AG L+Y + + + ++ I WA +I G V I TD YPGG FDPLG + PE EL+ K Sbjct: 38 TKQVSSGSPWYGPDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAI-WA-----TQVILMGAVEGYRIAGGPLGEVTDPIYPGGS-FDPLGL-ADDPEAFAELKVK 210
BLAST of CF836293 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 7.134e-18 Identity = 61/169 (36.09%), Postives = 83/169 (49.11%), Query Frame = 2 Query: 224 PNRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTK 700 P+R L+ PP +L G PGD+G+D GL +DPET N + E++HCRWAMLGA G PELL + G+ W+ AG L+Y + + + ++ I WA ++ G V I D YPGG FDPLG + PE EL+ K Sbjct: 52 PDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAI-WA-----CQVVLMGAVEGYRIAGGPLGEVVDPLYPGGS-FDPLGL-ADDPEAFGELKVK 212
BLAST of CF836293 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 9.317e-18 Identity = 64/169 (37.87%), Postives = 85/169 (50.30%), Query Frame = 2 Query: 227 NRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTK 700 +RPL+ F GS PP +L G PGD+G+D GL +DPET N + E++H RWAMLGA G PELL K G+ W+ AG L+Y + + + ++ I WA +I G V + D YPGG FDPLG + PE EL+ K Sbjct: 53 DRPLYLGPFSGS-PPSYLSGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAI-WA-----CQVILMGAVEGYRVAGGPLGEVEDPIYPGGS-FDPLGL-ADDPEAFAELKVK 212 The following BLAST results are available for this feature:
BLAST of CF836293 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 70
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Sequences
The
following sequences are available for this feature:
EST sequence >CF836293 ID=CF836293; Name=CF836293; organism=Citrus sinensis; type=EST; length=700bpback to top |