CF836293

Overview
NameCF836293
Unique NameCF836293
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length700
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836293 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.940e-19
Identity = 62/162 (38.27%), Postives = 79/162 (48.77%), Query Frame = 2
Query:  239 WFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTA--GELEY------FTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTK 700
            WFPG   P  LDGS PGDFGFDPLGL + PE      +SEI HCRWAML   G+ +PE L     +    W     G+  Y      + +  T+  +E + I +AE +R         +  DP             YPGG  FDPLG+ S  P K +EL+ K
Sbjct:   48 WFPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGLGNWVKAQEWAALPDGQATYLGNPVPWGNLPTILAIEFLAIAFAEQQR--------TMEKDP---------EKKKYPGGA-FDPLGF-SKDPAKFEELKLK 190          
BLAST of CF836293 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.101e-18
Identity = 68/187 (36.36%), Postives = 93/187 (49.73%), Query Frame = 2
Query:  182 AGTRSVSVSAAAAD---PNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTK 700
            A T+ ++ SA+ +    P+R L+   F G  PP +L G  PGD+G+D  GL +DPE    N + E++HCRWAMLGA G   PELL + G+      W+ AG        L+Y  + + +    ++ I WA       +I  G V    I        TD  YPGG  FDPLG     PE   EL+ K
Sbjct:   44 ATTKKLTASASTSPWYGPDRVLYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPENFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAI-WA-----CQVILMGAVEGYRIAGGPLGEVTDPIYPGGS-FDPLGLAE-DPEAFAELKVK 221          
BLAST of CF836293 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.437e-18
Identity = 58/162 (35.80%), Postives = 75/162 (46.30%), Query Frame = 2
Query:  239 WFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSW--YTAGELEYFTDTT------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTK 700
            W PG   P +LDGS PGDFGFD LGLG  P  L    +SE++HCRWAML   GI +PE L     +    W     G+  Y           T+  +E + I + E +R                 + +       YPGG  FDPLG+ S  P K +EL+ K
Sbjct:   49 WMPGQPRPSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEALGLGNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQR-----------------SMEKDSEKKKYPGGA-FDPLGY-SKDPAKFEELKVK 191          
BLAST of CF836293 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.452e-18
Identity = 59/157 (37.58%), Postives = 80/157 (50.96%), Query Frame = 2
Query:  257 PPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKL-TGTDVGYPGGLWFDPLGWGSGSPEKVKELRTK 700
            PP +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PELL + G+      W+ AG        L+Y  + + +    ++ I WA       +I  G V    +     L    D+ YPGG  FDPLG  +  PE   EL+ K
Sbjct:   65 PPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAI-WA-----TQVILMGAVEGYRVAGEGPLGEAEDLLYPGGS-FDPLGLAT-DPEAFAELKVK 213          
BLAST of CF836293 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.202e-18
Identity = 58/155 (37.42%), Postives = 79/155 (50.97%), Query Frame = 2
Query:  260 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTK 700
            P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PE+L+K G+      W+ AG        L+Y  +   +    ++ I WA     A ++  G V    +       G D  YPGG  FDPLG  +  PE   EL+ K
Sbjct:   66 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAI-WA-----AQVVLMGFVEGYRVGGGPLGEGLDKIYPGGA-FDPLGL-ADDPEAFAELKVK 212          
BLAST of CF836293 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.134e-18
Identity = 57/155 (36.77%), Postives = 79/155 (50.97%), Query Frame = 2
Query:  260 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTK 700
            P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PE+L+K G+      W+ AG        L+Y  +   +    ++ I WA     + ++  G V    +       G D  YPGG  FDPLG  +  PE   EL+ K
Sbjct:   38 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAI-WA-----SQVVLMGFVEGYRVGGGPLGEGLDKIYPGGA-FDPLGL-ADDPEAFAELKVK 184          
BLAST of CF836293 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.134e-18
Identity = 55/154 (35.71%), Postives = 76/154 (49.35%), Query Frame = 2
Query:  260 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGELEY------FTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTK 700
            P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PE+L+K G+      W+ AG   +      +     L   + I   WA     + ++  G +    +       G D  YPGG  FDPLG  +  PE   EL+ K
Sbjct:   66 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWA-----SQVVLMGLIEGYRVGGGPLGEGLDKIYPGGA-FDPLGL-ADDPEAFAELKVK 212          
BLAST of CF836293 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.134e-18
Identity = 66/182 (36.26%), Postives = 90/182 (49.45%), Query Frame = 2
Query:  188 TRSVSVSAAAADPNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTK 700
            T+ VS  +    P+R  +   F G  PP +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL++ G+      W+ AG        L+Y  + + +    ++ I WA       +I  G V    I        TD  YPGG  FDPLG  +  PE   EL+ K
Sbjct:   38 TKQVSSGSPWYGPDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAI-WA-----TQVILMGAVEGYRIAGGPLGEVTDPIYPGGS-FDPLGL-ADDPEAFAELKVK 210          
BLAST of CF836293 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.134e-18
Identity = 61/169 (36.09%), Postives = 83/169 (49.11%), Query Frame = 2
Query:  224 PNRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTK 700
            P+R L+       PP +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PELL + G+      W+ AG        L+Y  + + +    ++ I WA       ++  G V    I         D  YPGG  FDPLG  +  PE   EL+ K
Sbjct:   52 PDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAI-WA-----CQVVLMGAVEGYRIAGGPLGEVVDPLYPGGS-FDPLGL-ADDPEAFGELKVK 212          
BLAST of CF836293 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.317e-18
Identity = 64/169 (37.87%), Postives = 85/169 (50.30%), Query Frame = 2
Query:  227 NRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTK 700
            +RPL+   F GS PP +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL K G+      W+ AG        L+Y  + + +    ++ I WA       +I  G V    +         D  YPGG  FDPLG  +  PE   EL+ K
Sbjct:   53 DRPLYLGPFSGS-PPSYLSGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAI-WA-----CQVILMGAVEGYRVAGGPLGEVEDPIYPGGS-FDPLGL-ADDPEAFAELKVK 212          
The following BLAST results are available for this feature:
BLAST of CF836293 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
CB121_HORVU4.940e-1938.27Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB2B_PINSY1.101e-1836.36Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB11_SOLLC1.437e-1835.80Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB21_SINAL2.452e-1837.58Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB26_PETSP3.202e-1837.42Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB25_SOLLC7.134e-1836.77Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB23_TOBAC7.134e-1835.71Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB23_SOYBN7.134e-1836.26Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB22_MAIZE7.134e-1836.09Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_POLMU9.317e-1837.87Chlorophyll a-b binding protein type 1 member F3, ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02L20_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02L20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836293 ID=CF836293; Name=CF836293; organism=Citrus sinensis; type=EST; length=700bp
CGCCAGTCATAATTTTGCTGAAAGCCTTTGCCTGGTAGTAAAAATGGCTT
CCGTTTGTGCTTCCCCTGCCGTTGCAGCCATCTCATCCCCCAGTTCTCAG
AAGAGTAGATCAGTTGCGGGAGCAACAAAGGCTTCTTTCCTTGGTGGGAA
GAAGCTGAAATTGAGAAAAAACGGAGCAACAGCGGGAACACGATCGGTTT
CAGTGAGTGCGGCTGCAGCTGATCCTAACAGGCCTCTCTGGTTCCCAGGC
AGCACTCCTCCTGAATGGCTCGATGGTAGCCTCCCCGGAGACTTCGGCTT
CGATCCTCTTGGTCTTGGATCTGATCCTGAGACGCTGAGATGGAACGTGC
AATCAGAAATTGTGCACTGCAGATGGGCAATGTTAGGAGCTGCAGGAATT
TTCATTCCGGAATTGTTAACAAAACTTGGAATCCTCAACACTCCATCCTG
GTACACAGCTGGGGAGCTAGAGTACTTCACAGACACCACCACCCTGTTCA
TTGTTGAGATGATATTCATAGGCTGGGCAGAGGGCAGACGGTGGGCCGAC
ATTATAAAGCCAGGCTGTGTGAACACTGACCCGATCTTCCCCAACAACAA
GCTCACCGGCACCGATGTTGGGTACCCAGGTGGGCTTTGGTTTGACCCAC
TTGGCTGGGGATCCGGTTCGCCCGAGAAGGTAAAGGAGCTGAGGACTAAG
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