CF836293

Overview
NameCF836293
Unique NameCF836293
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length700
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836293 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.997e-16
Identity = 55/155 (35.48%), Postives = 76/155 (49.03%), Query Frame = 2
Query:  260 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTK 700
            P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PEL  + G+      W+ AG        L+Y  + + +    ++ I WA       ++  G V    +         D  YPGG  FDPLG  +  PE   EL+ K
Sbjct:   67 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAI-WA-----CQVVLMGAVEGYRVAGGPLGEVIDPLYPGGS-FDPLGL-ADDPEAFAELKVK 213          
BLAST of CF836293 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.997e-16
Identity = 58/163 (35.58%), Postives = 78/163 (47.85%), Query Frame = 2
Query:  260 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTK 700
            P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PEL  + G+      W  AG        L+Y  + +         ++  +++ +G  EG R A    P  V  DP+            YPGG  FDPLG     PE   EL+ K
Sbjct:   68 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFGEAVWLKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVLLMGAVEGYRVAG--GPLGVVVDPL------------YPGGS-FDPLGLAE-DPEAFAELKVK 214          
BLAST of CF836293 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.914e-16
Identity = 56/168 (33.33%), Postives = 77/168 (45.83%), Query Frame = 2
Query:  224 PNRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGELEY------FTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTK 700
            P+RP +        P +L G  PGD+G+D   + +DPET   N + E++HCRWAMLGA G   PELL K G+      W+ AG   +      +     L   + I   WA       ++  G +    +       G D   PGG  FDPLG  +  PE   EL+ K
Sbjct:   53 PDRPKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGLKFGEAVWFKAGAQIFSEGGLDYAGNPNLIHAQSILAIWA-----CQVVLMGLIEGYRVGGGTLGEGLDPLLPGGA-FDPLGL-ADDPEACAELKVK 213          
BLAST of CF836293 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.112e-16
Identity = 57/155 (36.77%), Postives = 77/155 (49.68%), Query Frame = 2
Query:  260 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTK 700
            P +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL++ G+      W+ AG        L+Y  + + +    ++ I WA       +I  G V    I         D  YPGG  FDPLG  +  PE   EL+ K
Sbjct:   69 PSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAI-WA-----TQVILMGAVEGYRIAGGPLGEVVDPLYPGGS-FDPLGL-ADDPEAFAELKVK 215          
BLAST of CF836293 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.112e-16
Identity = 58/163 (35.58%), Postives = 80/163 (49.08%), Query Frame = 2
Query:  260 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTK 700
            P +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL + G+      W+ AG        L+Y  + +        +++  ++I +G  EG R A    P     DP+            YPGG  FDPLG     PE+  EL+ K
Sbjct:   65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILSIWATQVILMGAVEGYRVAG--GPLGEIVDPL------------YPGGS-FDPLGLAE-DPERSAELKVK 211          
BLAST of CF836293 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.112e-16
Identity = 57/155 (36.77%), Postives = 77/155 (49.68%), Query Frame = 2
Query:  260 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTK 700
            P +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL++ G+      W+ AG        L+Y  + + +    ++ I WA       +I  G V    I         D  YPGG  FDPLG  +  PE   EL+ K
Sbjct:   70 PSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAI-WA-----TQVILMGAVEGYRIAGGPLGEVVDPLYPGGS-FDPLGL-ADDPEAFAELKVK 216          
BLAST of CF836293 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.677e-16
Identity = 55/155 (35.48%), Postives = 76/155 (49.03%), Query Frame = 2
Query:  260 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTK 700
            P +L G  PGD+G+D   L +DPET   N + E++HCRWAMLGA G   PELL + G+      W+ AG        L+Y  + + +    ++ I WA       ++  G V    +         D  YPGG  FDPLG  +  PE   EL+ K
Sbjct:   68 PSYLTGEFPGDYGWDTAELSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAI-WA-----CQVVLMGAVEGYRVAGGPLGEVVDPLYPGGS-FDPLGL-ADDPEAFAELKVK 214          
BLAST of CF836293 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.720e-16
Identity = 68/198 (34.34%), Postives = 92/198 (46.46%), Query Frame = 2
Query:  182 AGTRSVSVSAAAA------DPNRPLWF-PGST-PPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELL-TKLGI-LNTPSWYTAGE-------LEYF--------TDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTK 700
            AGT+    + A +       P+R  W  P ST  P +L G  PGD+G+D  GL +DPET +   + E++H RWA+LGA GI  PELL T  G+    P W+ AG        L+Y          +      V+++ +G  EG R         VN  P        G D  YPG   FDPLG  +  P+   EL+ K
Sbjct:   22 AGTKQTKAAPAKSAGIEWYGPDRAKWLGPFSTNTPAYLTGEFPGDYGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGGLDYLGSPALIHAQNIVATLAVQVVLMGLIEGYR---------VNGGPAG-----EGLDPLYPGES-FDPLGL-ADDPDTFAELKVK 203          
BLAST of CF836293 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.720e-16
Identity = 57/155 (36.77%), Postives = 76/155 (49.03%), Query Frame = 2
Query:  260 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTK 700
            P +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL++ G+      W+ AG        L+Y  + + +    ++ I WA       +I  G V    I         D  YPGG  FDPLG     PE   EL+ K
Sbjct:   29 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAI-WA-----TQVILMGAVEGYRIAGGPLGEVVDPLYPGGS-FDPLGLAE-VPEAFAELKVK 175          
BLAST of CF836293 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.139e-15
Identity = 62/180 (34.44%), Postives = 82/180 (45.56%), Query Frame = 2
Query:  224 PNRPLWFPG-----STPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPS--WYTAGELEYFTDTTTLF------------IVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWG----SGSPEKVKELR 694
            P+R ++ P      S  PE+L+G + GD+G+DP GLG  PE        E++H RWAMLGAAG  IPE L K G    P   W+  G L    +T   F            + E++ +G AE  R                  N L   D  +PGG  FDPLG       G+  KVKE++
Sbjct:   65 PDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVAEVVLLGGAEYYR----------------ITNGLDFEDKLHPGGP-FDPLGLAKDPEQGALLKVKEIK 227          
The following BLAST results are available for this feature:
BLAST of CF836293 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
CB24_PETSP2.997e-1635.48Chlorophyll a-b binding protein 25, chloroplastic ... [more]
CB22_PETSP2.997e-1635.58Chlorophyll a-b binding protein 22L, chloroplastic... [more]
CB21_PINTH3.914e-1633.33Chlorophyll a-b binding protein type I, chloroplas... [more]
CB28_PEA5.112e-1636.77Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB23_APIGR5.112e-1635.58Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB22_PEA5.112e-1636.77Chlorophyll a-b binding protein AB80, chloroplasti... [more]
CB25_PETSP6.677e-1635.48Chlorophyll a-b binding protein 91R, chloroplastic... [more]
CB2_CHLMO8.720e-1634.34Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB21_PEA8.720e-1636.77Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]
CB26_ARATH1.139e-1534.44Chlorophyll a-b binding protein CP26, chloroplasti... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02L20_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02L20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836293 ID=CF836293; Name=CF836293; organism=Citrus sinensis; type=EST; length=700bp
CGCCAGTCATAATTTTGCTGAAAGCCTTTGCCTGGTAGTAAAAATGGCTT
CCGTTTGTGCTTCCCCTGCCGTTGCAGCCATCTCATCCCCCAGTTCTCAG
AAGAGTAGATCAGTTGCGGGAGCAACAAAGGCTTCTTTCCTTGGTGGGAA
GAAGCTGAAATTGAGAAAAAACGGAGCAACAGCGGGAACACGATCGGTTT
CAGTGAGTGCGGCTGCAGCTGATCCTAACAGGCCTCTCTGGTTCCCAGGC
AGCACTCCTCCTGAATGGCTCGATGGTAGCCTCCCCGGAGACTTCGGCTT
CGATCCTCTTGGTCTTGGATCTGATCCTGAGACGCTGAGATGGAACGTGC
AATCAGAAATTGTGCACTGCAGATGGGCAATGTTAGGAGCTGCAGGAATT
TTCATTCCGGAATTGTTAACAAAACTTGGAATCCTCAACACTCCATCCTG
GTACACAGCTGGGGAGCTAGAGTACTTCACAGACACCACCACCCTGTTCA
TTGTTGAGATGATATTCATAGGCTGGGCAGAGGGCAGACGGTGGGCCGAC
ATTATAAAGCCAGGCTGTGTGAACACTGACCCGATCTTCCCCAACAACAA
GCTCACCGGCACCGATGTTGGGTACCCAGGTGGGCTTTGGTTTGACCCAC
TTGGCTGGGGATCCGGTTCGCCCGAGAAGGTAAAGGAGCTGAGGACTAAG
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