CF836295

Overview
NameCF836295
Unique NameCF836295
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length462
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836295 vs. ExPASy Swiss-Prot
Match: ARF3_BOVIN (ADP-ribosylation factor 3 OS=Bos taurus GN=ARF3 PE=2 SV=3)

HSP 1 Score: 172.555 bits (436), Expect = 7.485e-43
Identity = 80/149 (53.69%), Postives = 109/149 (73.15%), Query Frame = 1
Query:    1 ILXKPFIGEVLSTVPTIGFNDEKVQYKNVIFTDWDVGGTEKLRPLWRHYFNNTDGLIYVDDSLDRERIVKAKQEFHAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGL*LFDLKNRKWYIQGTCALIGYGLY*GLDWMASTLNEMR 447
            IL K  +GE+++T+PTIGFN E V+YKN+ FT WDVGG +K+RPLWRHYF NT GLI+V DS DRER+ +A++E   ++ +  + ++V+LVFANKQD+  AM   E+ + L L  L++R WYIQ TCA  G GLY GLDW+A+ L   +
Sbjct:   33 ILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNKK 181          
BLAST of CF836295 vs. ExPASy Swiss-Prot
Match: ARF12_CAEEL (ADP-ribosylation factor 1-like 2 OS=Caenorhabditis elegans GN=arf-1.2 PE=1 SV=2)

HSP 1 Score: 172.555 bits (436), Expect = 7.485e-43
Identity = 81/145 (55.86%), Postives = 108/145 (74.48%), Query Frame = 1
Query:    1 ILXKPFIGEVLSTVPTIGFNDEKVQYKNVIFTDWDVGGTEKLRPLWRHYFNNTDGLIYVDDSLDRERIVKAKQEFHAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGL*LFDLKNRKWYIQGTCALIGYGLY*GLDWMASTL 435
            IL K  +GE+++T+PTIGFN E V+YKN+ FT WDVGG +K+RPLWRHYF NT GLI+V DS DRER+ +A++E   ++ +  + ++V+LVFANKQD+  AM   EV + L L  L+NR WYIQ TCA  G GLY GLDW+++ L
Sbjct:   33 ILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVGEAREELMRMLAEDELRDAVLLVFANKQDLPQAMNAAEVTDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSNQL 177          
BLAST of CF836295 vs. ExPASy Swiss-Prot
Match: ARF12_CAEBR (ADP-ribosylation factor 1-like 2 OS=Caenorhabditis briggsae GN=arf-1.2 PE=3 SV=3)

HSP 1 Score: 172.555 bits (436), Expect = 7.485e-43
Identity = 81/145 (55.86%), Postives = 108/145 (74.48%), Query Frame = 1
Query:    1 ILXKPFIGEVLSTVPTIGFNDEKVQYKNVIFTDWDVGGTEKLRPLWRHYFNNTDGLIYVDDSLDRERIVKAKQEFHAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGL*LFDLKNRKWYIQGTCALIGYGLY*GLDWMASTL 435
            IL K  +GE+++T+PTIGFN E V+YKN+ FT WDVGG +K+RPLWRHYF NT GLI+V DS DRER+ +A++E   ++ +  + ++V+LVFANKQD+  AM   EV + L L  L+NR WYIQ TCA  G GLY GLDW+++ L
Sbjct:   33 ILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVGEAREELMRMLAEDELRDAVLLVFANKQDLPQAMNAAEVTDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSNQL 177          
BLAST of CF836295 vs. ExPASy Swiss-Prot
Match: ARF4_XENLA (ADP-ribosylation factor 4 OS=Xenopus laevis GN=arf4 PE=2 SV=2)

HSP 1 Score: 171.785 bits (434), Expect = 1.277e-42
Identity = 80/147 (54.42%), Postives = 110/147 (74.83%), Query Frame = 1
Query:    1 ILXKPFIGEVLSTVPTIGFNDEKVQYKNVIFTDWDVGGTEKLRPLWRHYFNNTDGLIYVDDSLDRERIVKAKQEFHAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGL*LFDLKNRKWYIQGTCALIGYGLY*GLDWMASTLNE 441
            IL K  +GE+++T+PTIGFN E V+YKN+ FT WDVGG +K+RPLWRHYF NT GLI+V DS DRERI +A +E   ++++  + ++V+LVFANKQD+  AM   E+ + L L  L+NR WY+Q TCA  G GLY GLDW+++ L++
Sbjct:   33 ILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEAAEELQKMLQEDELRDAVLLVFANKQDLPNAMAISEMTDKLTLQTLRNRTWYVQATCATQGTGLYEGLDWLSNELSK 179          
BLAST of CF836295 vs. ExPASy Swiss-Prot
Match: ARF1_XENLA (ADP-ribosylation factor 1 OS=Xenopus laevis GN=arf1 PE=2 SV=2)

HSP 1 Score: 171.785 bits (434), Expect = 1.277e-42
Identity = 79/149 (53.02%), Postives = 109/149 (73.15%), Query Frame = 1
Query:    1 ILXKPFIGEVLSTVPTIGFNDEKVQYKNVIFTDWDVGGTEKLRPLWRHYFNNTDGLIYVDDSLDRERIVKAKQEFHAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGL*LFDLKNRKWYIQGTCALIGYGLY*GLDWMASTLNEMR 447
            IL K  +GE+++T+PTIGFN E V+YKN+ FT WDVGG +K+RPLWRHYF NT GLI+V DS DRER+ +A++E   ++ +  + ++V+LVFANKQD+  AM   E+ + L L  L++R WYIQ TCA  G GLY GLDW+++ L   +
Sbjct:   33 ILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQK 181          
BLAST of CF836295 vs. ExPASy Swiss-Prot
Match: ARF1_RAT (ADP-ribosylation factor 1 OS=Rattus norvegicus GN=Arf1 PE=1 SV=2)

HSP 1 Score: 171.785 bits (434), Expect = 1.277e-42
Identity = 79/149 (53.02%), Postives = 109/149 (73.15%), Query Frame = 1
Query:    1 ILXKPFIGEVLSTVPTIGFNDEKVQYKNVIFTDWDVGGTEKLRPLWRHYFNNTDGLIYVDDSLDRERIVKAKQEFHAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGL*LFDLKNRKWYIQGTCALIGYGLY*GLDWMASTLNEMR 447
            IL K  +GE+++T+PTIGFN E V+YKN+ FT WDVGG +K+RPLWRHYF NT GLI+V DS DRER+ +A++E   ++ +  + ++V+LVFANKQD+  AM   E+ + L L  L++R WYIQ TCA  G GLY GLDW+++ L   +
Sbjct:   33 ILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQK 181          
BLAST of CF836295 vs. ExPASy Swiss-Prot
Match: ARF1_MOUSE (ADP-ribosylation factor 1 OS=Mus musculus GN=Arf1 PE=1 SV=2)

HSP 1 Score: 171.785 bits (434), Expect = 1.277e-42
Identity = 79/149 (53.02%), Postives = 109/149 (73.15%), Query Frame = 1
Query:    1 ILXKPFIGEVLSTVPTIGFNDEKVQYKNVIFTDWDVGGTEKLRPLWRHYFNNTDGLIYVDDSLDRERIVKAKQEFHAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGL*LFDLKNRKWYIQGTCALIGYGLY*GLDWMASTLNEMR 447
            IL K  +GE+++T+PTIGFN E V+YKN+ FT WDVGG +K+RPLWRHYF NT GLI+V DS DRER+ +A++E   ++ +  + ++V+LVFANKQD+  AM   E+ + L L  L++R WYIQ TCA  G GLY GLDW+++ L   +
Sbjct:   33 ILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQK 181          
BLAST of CF836295 vs. ExPASy Swiss-Prot
Match: ARF1_MACFA (ADP-ribosylation factor 1 OS=Macaca fascicularis GN=ARF1 PE=2 SV=3)

HSP 1 Score: 171.785 bits (434), Expect = 1.277e-42
Identity = 79/149 (53.02%), Postives = 109/149 (73.15%), Query Frame = 1
Query:    1 ILXKPFIGEVLSTVPTIGFNDEKVQYKNVIFTDWDVGGTEKLRPLWRHYFNNTDGLIYVDDSLDRERIVKAKQEFHAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGL*LFDLKNRKWYIQGTCALIGYGLY*GLDWMASTLNEMR 447
            IL K  +GE+++T+PTIGFN E V+YKN+ FT WDVGG +K+RPLWRHYF NT GLI+V DS DRER+ +A++E   ++ +  + ++V+LVFANKQD+  AM   E+ + L L  L++R WYIQ TCA  G GLY GLDW+++ L   +
Sbjct:   33 ILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQK 181          
BLAST of CF836295 vs. ExPASy Swiss-Prot
Match: ARF1_HUMAN (ADP-ribosylation factor 1 OS=Homo sapiens GN=ARF1 PE=1 SV=2)

HSP 1 Score: 171.785 bits (434), Expect = 1.277e-42
Identity = 79/149 (53.02%), Postives = 109/149 (73.15%), Query Frame = 1
Query:    1 ILXKPFIGEVLSTVPTIGFNDEKVQYKNVIFTDWDVGGTEKLRPLWRHYFNNTDGLIYVDDSLDRERIVKAKQEFHAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGL*LFDLKNRKWYIQGTCALIGYGLY*GLDWMASTLNEMR 447
            IL K  +GE+++T+PTIGFN E V+YKN+ FT WDVGG +K+RPLWRHYF NT GLI+V DS DRER+ +A++E   ++ +  + ++V+LVFANKQD+  AM   E+ + L L  L++R WYIQ TCA  G GLY GLDW+++ L   +
Sbjct:   33 ILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQK 181          
BLAST of CF836295 vs. ExPASy Swiss-Prot
Match: ARF1_BOVIN (ADP-ribosylation factor 1 OS=Bos taurus GN=ARF1 PE=1 SV=2)

HSP 1 Score: 171.785 bits (434), Expect = 1.277e-42
Identity = 79/149 (53.02%), Postives = 109/149 (73.15%), Query Frame = 1
Query:    1 ILXKPFIGEVLSTVPTIGFNDEKVQYKNVIFTDWDVGGTEKLRPLWRHYFNNTDGLIYVDDSLDRERIVKAKQEFHAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGL*LFDLKNRKWYIQGTCALIGYGLY*GLDWMASTLNEMR 447
            IL K  +GE+++T+PTIGFN E V+YKN+ FT WDVGG +K+RPLWRHYF NT GLI+V DS DRER+ +A++E   ++ +  + ++V+LVFANKQD+  AM   E+ + L L  L++R WYIQ TCA  G GLY GLDW+++ L   +
Sbjct:   33 ILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQK 181          
The following BLAST results are available for this feature:
BLAST of CF836295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 161
Match NameE-valueIdentityDescription
ARF3_BOVIN7.485e-4353.69ADP-ribosylation factor 3 OS=Bos taurus GN=ARF3 PE... [more]
ARF12_CAEEL7.485e-4355.86ADP-ribosylation factor 1-like 2 OS=Caenorhabditis... [more]
ARF12_CAEBR7.485e-4355.86ADP-ribosylation factor 1-like 2 OS=Caenorhabditis... [more]
ARF4_XENLA1.277e-4254.42ADP-ribosylation factor 4 OS=Xenopus laevis GN=arf... [more]
ARF1_XENLA1.277e-4253.02ADP-ribosylation factor 1 OS=Xenopus laevis GN=arf... [more]
ARF1_RAT1.277e-4253.02ADP-ribosylation factor 1 OS=Rattus norvegicus GN=... [more]
ARF1_MOUSE1.277e-4253.02ADP-ribosylation factor 1 OS=Mus musculus GN=Arf1 ... [more]
ARF1_MACFA1.277e-4253.02ADP-ribosylation factor 1 OS=Macaca fascicularis G... [more]
ARF1_HUMAN1.277e-4253.02ADP-ribosylation factor 1 OS=Homo sapiens GN=ARF1 ... [more]
ARF1_BOVIN1.277e-4253.02ADP-ribosylation factor 1 OS=Bos taurus GN=ARF1 PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02L21_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02L21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836295 ID=CF836295; Name=CF836295; organism=Citrus sinensis; type=EST; length=462bp
ATACTGNACAAGCCCTTCATTGGTGAAGTTTTATCTACTGTTCCTACTAT
TGGTTTTAATGACGAGAAAGTTCAGTATAAGAATGTCATATTCACTGATT
GGGATGTTGGCGGAACAGAGAAATTGAGGCCACTATGGAGGCATTATTTT
AATAACACTGATGGACTGATCTATGTTGATGACTCCTTGGACCGGGAGAG
AATTGTTAAAGCAAAGCAAGAATTTCATGCCATTATCAAAGATCCTTTTA
TGCTGAACAGCGTCATTTTGGTGTTTGCCAATAAACAGGACATGAAAGGA
GCAATGACCCCAATGGAAGTATGTGAAGGATTATGACTCTTTGATCTCAA
GAACAGGAAATGGTATATTCAAGGGACTTGTGCACTTATAGGATATGGAC
TTTACTAAGGCTTGGATTGGATGGCTTCAACACTTAACGAGATGAGAGCT
GCTGGATACTCT
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