CF836295

Overview
NameCF836295
Unique NameCF836295
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length462
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836295 vs. ExPASy Swiss-Prot
Match: ARF1_SOLTU (ADP-ribosylation factor 1 OS=Solanum tuberosum PE=2 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 2.178e-42
Identity = 78/150 (52.00%), Postives = 109/150 (72.67%), Query Frame = 1
Query:    1 ILXKPFIGEVLSTVPTIGFNDEKVQYKNVIFTDWDVGGTEKLRPLWRHYFNNTDGLIYVDDSLDRERIVKAKQEFHAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGL*LFDLKNRKWYIQGTCALIGYGLY*GLDWMASTLNEMRA 450
            IL K  +GE+++T+PTIGFN E V+YKN+ FT WDVGG +K+RPLWRHYF NT GLI+V DS DR+R+ +A++E   ++ +  + ++V+LVFANKQD+  AM   E+ + L L  L+ R WYIQ TCA  G GLY GLDW+++ +   +A
Sbjct:   33 ILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNQIRNQKA 182          
BLAST of CF836295 vs. ExPASy Swiss-Prot
Match: ARF1_PLAFO (ADP-ribosylation factor 1 OS=Plasmodium falciparum (isolate NF54) GN=ARF1 PE=2 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 2.178e-42
Identity = 80/149 (53.69%), Postives = 109/149 (73.15%), Query Frame = 1
Query:    1 ILXKPFIGEVLSTVPTIGFNDEKVQYKNVIFTDWDVGGTEKLRPLWRHYFNNTDGLIYVDDSLDRERIVKAKQEFHAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGL*LFDLKNRKWYIQGTCALIGYGLY*GLDWMASTLNEMR 447
            IL K  +GEV++T+PTIGFN E V+++N+ FT WDVGG +K+RPLWRHY++NTDGLI+V DS DRERI  A++  H +I +  + +++ILVFANKQD+  AM+  EV E L L  ++ R W+IQ TCA  G GLY G DW+ + LN  +
Sbjct:   33 ILYKVKLGEVVTTIPTIGFNVETVEFRNISFTVWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRERIDDAREGLHRMINEEELKDAIILVFANKQDLPNAMSAAEVTEKLHLNTIRERNWFIQSTCATRGDGLYEGFDWLTTHLNNAK 181          
BLAST of CF836295 vs. ExPASy Swiss-Prot
Match: ARF1_DICDI (ADP-ribosylation factor 1 OS=Dictyostelium discoideum GN=arfA PE=1 SV=3)

HSP 1 Score: 170.629 bits (431), Expect = 2.844e-42
Identity = 81/145 (55.86%), Postives = 108/145 (74.48%), Query Frame = 1
Query:    1 ILXKPFIGEVLSTVPTIGFNDEKVQYKNVIFTDWDVGGTEKLRPLWRHYFNNTDGLIYVDDSLDRERIVKAKQEFHAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGL*LFDLKNRKWYIQGTCALIGYGLY*GLDWMASTL 435
            IL K  +GE+++T+PTIGFN E V++KN+ FT WDVGG +K+RPLWRHYF NT GLI+V DS DRERI +A  E   ++ +  + ++V+LVF NKQD+  AM+  EV + L L  L++RKWYIQ TCA  G GLY GLDW+++TL
Sbjct:   33 ILYKLKLGEIVTTIPTIGFNVETVEFKNINFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEACDELTKMLNEDELRDAVLLVFCNKQDLPNAMSVAEVTDKLNLHSLRSRKWYIQSTCATSGDGLYEGLDWLSNTL 177          
BLAST of CF836295 vs. ExPASy Swiss-Prot
Match: ARF_NEUCR (ADP-ribosylation factor OS=Neurospora crassa GN=NCU08340 PE=3 SV=3)

HSP 1 Score: 170.244 bits (430), Expect = 3.715e-42
Identity = 77/147 (52.38%), Postives = 109/147 (74.15%), Query Frame = 1
Query:    1 ILXKPFIGEVLSTVPTIGFNDEKVQYKNVIFTDWDVGGTEKLRPLWRHYFNNTDGLIYVDDSLDRERIVKAKQEFHAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGL*LFDLKNRKWYIQGTCALIGYGLY*GLDWMASTLNE 441
            IL K  +GEV++T+PTIGFN E V+YKN+ FT WDVGG +K+RPLWRHYF NT G+I+V DS DR+R+V+A++E   ++ +  + ++++LVFANKQD+  AM   E+ + L L  L+ R WYIQ TCA  G GL+ GLDW+++ L +
Sbjct:   36 ILYKLKLGEVVTTIPTIGFNVETVEYKNIQFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRDRVVEAREELQRMLNEDELRDALLLVFANKQDLPNAMNAAEITDKLGLSSLRQRSWYIQATCATTGDGLFEGLDWLSTELKK 182          
BLAST of CF836295 vs. ExPASy Swiss-Prot
Match: ARF2_RAT (ADP-ribosylation factor 2 OS=Rattus norvegicus GN=Arf2 PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 4.852e-42
Identity = 78/149 (52.35%), Postives = 107/149 (71.81%), Query Frame = 1
Query:    1 ILXKPFIGEVLSTVPTIGFNDEKVQYKNVIFTDWDVGGTEKLRPLWRHYFNNTDGLIYVDDSLDRERIVKAKQEFHAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGL*LFDLKNRKWYIQGTCALIGYGLY*GLDWMASTLNEMR 447
            IL K  +GE+++T+PTIGFN E V+YKN+ FT WDVGG +K+RPLWRHYF NT GLI+V DS DRER+ +A++E   ++ +  + ++V+LVF NKQD+  AM   E+ + L L  L+ R WYIQ TCA  G GLY GLDW+++ L   +
Sbjct:   33 ILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELTRMLAEDELRDAVLLVFVNKQDLPNAMNAAEITDKLGLHSLRQRNWYIQATCATSGDGLYEGLDWLSNQLKNQK 181          
BLAST of CF836295 vs. ExPASy Swiss-Prot
Match: ARF2_MOUSE (ADP-ribosylation factor 2 OS=Mus musculus GN=Arf2 PE=1 SV=2)

HSP 1 Score: 169.859 bits (429), Expect = 4.852e-42
Identity = 78/149 (52.35%), Postives = 107/149 (71.81%), Query Frame = 1
Query:    1 ILXKPFIGEVLSTVPTIGFNDEKVQYKNVIFTDWDVGGTEKLRPLWRHYFNNTDGLIYVDDSLDRERIVKAKQEFHAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGL*LFDLKNRKWYIQGTCALIGYGLY*GLDWMASTLNEMR 447
            IL K  +GE+++T+PTIGFN E V+YKN+ FT WDVGG +K+RPLWRHYF NT GLI+V DS DRER+ +A++E   ++ +  + ++V+LVF NKQD+  AM   E+ + L L  L+ R WYIQ TCA  G GLY GLDW+++ L   +
Sbjct:   33 ILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELTRMLAEDELRDAVLLVFVNKQDLPNAMNAAEITDKLGLHSLRQRNWYIQATCATSGDGLYEGLDWLSNQLKNQK 181          
BLAST of CF836295 vs. ExPASy Swiss-Prot
Match: ARF2_BOVIN (ADP-ribosylation factor 2 OS=Bos taurus GN=ARF2 PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 4.852e-42
Identity = 78/149 (52.35%), Postives = 107/149 (71.81%), Query Frame = 1
Query:    1 ILXKPFIGEVLSTVPTIGFNDEKVQYKNVIFTDWDVGGTEKLRPLWRHYFNNTDGLIYVDDSLDRERIVKAKQEFHAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGL*LFDLKNRKWYIQGTCALIGYGLY*GLDWMASTLNEMR 447
            IL K  +GE+++T+PTIGFN E V+YKN+ FT WDVGG +K+RPLWRHYF NT GLI+V DS DRER+ +A++E   ++ +  + ++V+LVF NKQD+  AM   E+ + L L  L+ R WYIQ TCA  G GLY GLDW+++ L   +
Sbjct:   33 ILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELTRMLAEDELRDAVLLVFVNKQDLPNAMNAAEITDKLGLHSLRQRNWYIQATCATSGDGLYEGLDWLSNQLKNQK 181          
BLAST of CF836295 vs. ExPASy Swiss-Prot
Match: ARF4_BOVIN (ADP-ribosylation factor 4 OS=Bos taurus GN=ARF4 PE=2 SV=3)

HSP 1 Score: 169.474 bits (428), Expect = 6.337e-42
Identity = 78/147 (53.06%), Postives = 109/147 (74.15%), Query Frame = 1
Query:    1 ILXKPFIGEVLSTVPTIGFNDEKVQYKNVIFTDWDVGGTEKLRPLWRHYFNNTDGLIYVDDSLDRERIVKAKQEFHAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGL*LFDLKNRKWYIQGTCALIGYGLY*GLDWMASTLNE 441
            IL K  +GE+++T+PTIGFN E V+YKN+ FT WDVGG +K+RPLWRHYF NT GLI+V DS DRERI +  +E   ++++  + ++V+L+FANKQD+  AM   E+ + L L  L+NR WY+Q TCA  G GLY GLDW+++ L++
Sbjct:   33 ILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGAEELQKMLQEDELRDAVLLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSK 179          
BLAST of CF836295 vs. ExPASy Swiss-Prot
Match: ARF_ASHGO (ADP-ribosylation factor OS=Ashbya gossypii GN=ARF1 PE=3 SV=3)

HSP 1 Score: 169.088 bits (427), Expect = 8.276e-42
Identity = 77/145 (53.10%), Postives = 107/145 (73.79%), Query Frame = 1
Query:    1 ILXKPFIGEVLSTVPTIGFNDEKVQYKNVIFTDWDVGGTEKLRPLWRHYFNNTDGLIYVDDSLDRERIVKAKQEFHAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGL*LFDLKNRKWYIQGTCALIGYGLY*GLDWMASTL 435
            +L K  +GEV++T+PTIGFN E V+YKN+ FT WDVGG +K+RPLWRHYF NT+G+I+V DS DR RI +A++    ++ +  + N+V+LVFANKQD+  AM+  E+ E L L  ++ R WYIQ TCA  G GLY GL+W+++ L
Sbjct:   33 VLYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFRNTEGIIFVVDSNDRSRIAEAREVLQRMLNEDEIRNAVLLVFANKQDLPEAMSAAEITEKLGLHSIRQRPWYIQATCATSGEGLYEGLEWLSTNL 177          
BLAST of CF836295 vs. ExPASy Swiss-Prot
Match: ARF5_CHICK (ADP-ribosylation factor 5 OS=Gallus gallus GN=ARF5 PE=2 SV=2)

HSP 1 Score: 168.703 bits (426), Expect = 1.081e-41
Identity = 78/147 (53.06%), Postives = 109/147 (74.15%), Query Frame = 1
Query:    1 ILXKPFIGEVLSTVPTIGFNDEKVQYKNVIFTDWDVGGTEKLRPLWRHYFNNTDGLIYVDDSLDRERIVKAKQEFHAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGL*LFDLKNRKWYIQGTCALIGYGLY*GLDWMASTLNE 441
            IL K  +GE+++T+PTIGFN E V+YKN+ FT WDVGG +K+RPLWRHYF NT GLI+V DS DRER+ ++ +E   ++++  + ++V+LVFANKQDM  AM   E+ + L L  L++R WY+Q TCA  G GLY GLDW++  L++
Sbjct:   33 ILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESAEELQKMLQEDELRDAVLLVFANKQDMPNAMVVSELTDKLGLQALRSRTWYVQATCATQGTGLYDGLDWLSHELSK 179          
The following BLAST results are available for this feature:
BLAST of CF836295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 161
Match NameE-valueIdentityDescription
ARF1_SOLTU2.178e-4252.00ADP-ribosylation factor 1 OS=Solanum tuberosum PE=... [more]
ARF1_PLAFO2.178e-4253.69ADP-ribosylation factor 1 OS=Plasmodium falciparum... [more]
ARF1_DICDI2.844e-4255.86ADP-ribosylation factor 1 OS=Dictyostelium discoid... [more]
ARF_NEUCR3.715e-4252.38ADP-ribosylation factor OS=Neurospora crassa GN=NC... [more]
ARF2_RAT4.852e-4252.35ADP-ribosylation factor 2 OS=Rattus norvegicus GN=... [more]
ARF2_MOUSE4.852e-4252.35ADP-ribosylation factor 2 OS=Mus musculus GN=Arf2 ... [more]
ARF2_BOVIN4.852e-4252.35ADP-ribosylation factor 2 OS=Bos taurus GN=ARF2 PE... [more]
ARF4_BOVIN6.337e-4253.06ADP-ribosylation factor 4 OS=Bos taurus GN=ARF4 PE... [more]
ARF_ASHGO8.276e-4253.10ADP-ribosylation factor OS=Ashbya gossypii GN=ARF1... [more]
ARF5_CHICK1.081e-4153.06ADP-ribosylation factor 5 OS=Gallus gallus GN=ARF5... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02L21_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02L21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836295 ID=CF836295; Name=CF836295; organism=Citrus sinensis; type=EST; length=462bp
ATACTGNACAAGCCCTTCATTGGTGAAGTTTTATCTACTGTTCCTACTAT
TGGTTTTAATGACGAGAAAGTTCAGTATAAGAATGTCATATTCACTGATT
GGGATGTTGGCGGAACAGAGAAATTGAGGCCACTATGGAGGCATTATTTT
AATAACACTGATGGACTGATCTATGTTGATGACTCCTTGGACCGGGAGAG
AATTGTTAAAGCAAAGCAAGAATTTCATGCCATTATCAAAGATCCTTTTA
TGCTGAACAGCGTCATTTTGGTGTTTGCCAATAAACAGGACATGAAAGGA
GCAATGACCCCAATGGAAGTATGTGAAGGATTATGACTCTTTGATCTCAA
GAACAGGAAATGGTATATTCAAGGGACTTGTGCACTTATAGGATATGGAC
TTTACTAAGGCTTGGATTGGATGGCTTCAACACTTAACGAGATGAGAGCT
GCTGGATACTCT
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