CF836295

Overview
NameCF836295
Unique NameCF836295
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length462
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836295 vs. ExPASy Swiss-Prot
Match: ARF_CRYNE (ADP-ribosylation factor OS=Cryptococcus neoformans GN=ARF PE=1 SV=3)

HSP 1 Score: 168.318 bits (425), Expect = 1.412e-41
Identity = 76/145 (52.41%), Postives = 106/145 (73.10%), Query Frame = 1
Query:    1 ILXKPFIGEVLSTVPTIGFNDEKVQYKNVIFTDWDVGGTEKLRPLWRHYFNNTDGLIYVDDSLDRERIVKAKQEFHAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGL*LFDLKNRKWYIQGTCALIGYGLY*GLDWMASTL 435
            IL K  +GE+++T+PTIGFN E V+YKN+ FT WDVGG +K+RPLWRHYF NT G+I+V DS DRERI +A++E   ++ +  + ++++LVFANKQD+  AM   E+ + L L  L+ R WYIQ  CA  G GLY GL+W+++ L
Sbjct:   33 ILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRERITEAREELQRMLSEDELRDALLLVFANKQDLPNAMNAAEITDKLGLHSLRQRSWYIQAACATSGDGLYEGLEWLSANL 177          
BLAST of CF836295 vs. ExPASy Swiss-Prot
Match: ARF5_RAT (ADP-ribosylation factor 5 OS=Rattus norvegicus GN=Arf5 PE=1 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 1.844e-41
Identity = 78/147 (53.06%), Postives = 108/147 (73.47%), Query Frame = 1
Query:    1 ILXKPFIGEVLSTVPTIGFNDEKVQYKNVIFTDWDVGGTEKLRPLWRHYFNNTDGLIYVDDSLDRERIVKAKQEFHAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGL*LFDLKNRKWYIQGTCALIGYGLY*GLDWMASTLNE 441
            IL K  +GE+++T+PTIGFN E V+YKN+ FT WDVGG +K+RPLWRHYF NT GLI+V DS DRER+ ++  E   ++++  + ++V+LVFANKQDM  AM   E+ + L L  L++R WY+Q TCA  G GLY GLDW++  L++
Sbjct:   33 ILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSK 179          
BLAST of CF836295 vs. ExPASy Swiss-Prot
Match: ARF5_MOUSE (ADP-ribosylation factor 5 OS=Mus musculus GN=Arf5 PE=2 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 1.844e-41
Identity = 78/147 (53.06%), Postives = 108/147 (73.47%), Query Frame = 1
Query:    1 ILXKPFIGEVLSTVPTIGFNDEKVQYKNVIFTDWDVGGTEKLRPLWRHYFNNTDGLIYVDDSLDRERIVKAKQEFHAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGL*LFDLKNRKWYIQGTCALIGYGLY*GLDWMASTLNE 441
            IL K  +GE+++T+PTIGFN E V+YKN+ FT WDVGG +K+RPLWRHYF NT GLI+V DS DRER+ ++  E   ++++  + ++V+LVFANKQDM  AM   E+ + L L  L++R WY+Q TCA  G GLY GLDW++  L++
Sbjct:   33 ILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSK 179          
BLAST of CF836295 vs. ExPASy Swiss-Prot
Match: ARF5_HUMAN (ADP-ribosylation factor 5 OS=Homo sapiens GN=ARF5 PE=1 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 1.844e-41
Identity = 78/147 (53.06%), Postives = 108/147 (73.47%), Query Frame = 1
Query:    1 ILXKPFIGEVLSTVPTIGFNDEKVQYKNVIFTDWDVGGTEKLRPLWRHYFNNTDGLIYVDDSLDRERIVKAKQEFHAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGL*LFDLKNRKWYIQGTCALIGYGLY*GLDWMASTLNE 441
            IL K  +GE+++T+PTIGFN E V+YKN+ FT WDVGG +K+RPLWRHYF NT GLI+V DS DRER+ ++  E   ++++  + ++V+LVFANKQDM  AM   E+ + L L  L++R WY+Q TCA  G GLY GLDW++  L++
Sbjct:   33 ILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSK 179          
BLAST of CF836295 vs. ExPASy Swiss-Prot
Match: ARF1_SCHPO (ADP-ribosylation factor 1 OS=Schizosaccharomyces pombe GN=arf1 PE=2 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 1.844e-41
Identity = 76/145 (52.41%), Postives = 108/145 (74.48%), Query Frame = 1
Query:    1 ILXKPFIGEVLSTVPTIGFNDEKVQYKNVIFTDWDVGGTEKLRPLWRHYFNNTDGLIYVDDSLDRERIVKAKQEFHAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGL*LFDLKNRKWYIQGTCALIGYGLY*GLDWMASTL 435
            IL K  +GE+++T+PTIGFN E V+Y+N+ FT WDVGG +K+RPLWRHYF NT G+I+V DS DRERI +A +E   ++ +  + ++++LVFANKQD+  AM   E+ + L L  L++R+WYIQ TCA  G GLY GL+W+++ L
Sbjct:   33 ILYKLKLGEIVTTIPTIGFNVETVEYRNISFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRERISEAHEELQRMLNEDELRDALLLVFANKQDLPNAMNAAEITDKLGLHSLRHRQWYIQATCATSGDGLYEGLEWLSTNL 177          
BLAST of CF836295 vs. ExPASy Swiss-Prot
Match: ARF1_CATRO (ADP-ribosylation factor 1 OS=Catharanthus roseus GN=ARF1 PE=2 SV=3)

HSP 1 Score: 166.392 bits (420), Expect = 5.364e-41
Identity = 75/145 (51.72%), Postives = 106/145 (73.10%), Query Frame = 1
Query:    1 ILXKPFIGEVLSTVPTIGFNDEKVQYKNVIFTDWDVGGTEKLRPLWRHYFNNTDGLIYVDDSLDRERIVKAKQEFHAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGL*LFDLKNRKWYIQGTCALIGYGLY*GLDWMASTL 435
            IL +  +GE+++T+PTIGFN E V+Y+ + FT WDVGG +K+RPLWRHYF NT GLI+V DS DR+R+V+A+ E H ++ +  + ++V+LVFANKQD+  AM   E+ +   L  L+ R WYIQ TCA  G GLY GLDW+++ +
Sbjct:   33 ILYQLKLGEIVTTIPTIGFNVETVEYQYISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKHGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177          
BLAST of CF836295 vs. ExPASy Swiss-Prot
Match: ARF4_RAT (ADP-ribosylation factor 4 OS=Rattus norvegicus GN=Arf4 PE=2 SV=2)

HSP 1 Score: 164.466 bits (415), Expect = 2.038e-40
Identity = 77/147 (52.38%), Postives = 106/147 (72.11%), Query Frame = 1
Query:    1 ILXKPFIGEVLSTVPTIGFNDEKVQYKNVIFTDWDVGGTEKLRPLWRHYFNNTDGLIYVDDSLDRERIVKAKQEFHAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGL*LFDLKNRKWYIQGTCALIGYGLY*GLDWMASTLNE 441
            IL K  +GE+++T+PTIGFN E V+YKN+ FT WDVGG +K+RPLWRHYF NT GLI+V DS DRERI +       ++ +  + ++V+L+FANKQD+  AM   E+ + L L  L+NR WY+Q TCA  G GLY GLDW+++ L++
Sbjct:   33 ILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGAAVLQKMLLEDELQDAVLLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSK 179          
BLAST of CF836295 vs. ExPASy Swiss-Prot
Match: ARF4_MOUSE (ADP-ribosylation factor 4 OS=Mus musculus GN=Arf4 PE=2 SV=2)

HSP 1 Score: 164.466 bits (415), Expect = 2.038e-40
Identity = 77/147 (52.38%), Postives = 106/147 (72.11%), Query Frame = 1
Query:    1 ILXKPFIGEVLSTVPTIGFNDEKVQYKNVIFTDWDVGGTEKLRPLWRHYFNNTDGLIYVDDSLDRERIVKAKQEFHAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGL*LFDLKNRKWYIQGTCALIGYGLY*GLDWMASTLNE 441
            IL K  +GE+++T+PTIGFN E V+YKN+ FT WDVGG +K+RPLWRHYF NT GLI+V DS DRERI +       ++ +  + ++V+L+FANKQD+  AM   E+ + L L  L+NR WY+Q TCA  G GLY GLDW+++ L++
Sbjct:   33 ILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGAAVLQKMLLEDELQDAVLLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSK 179          
BLAST of CF836295 vs. ExPASy Swiss-Prot
Match: ARF_GIALA (ADP-ribosylation factor OS=Giardia lamblia PE=3 SV=3)

HSP 1 Score: 163.696 bits (413), Expect = 3.477e-40
Identity = 81/144 (56.25%), Postives = 103/144 (71.53%), Query Frame = 1
Query:    1 ILXKPFIGEVLSTVPTIGFNDEKVQYKNVIFTDWDVGGTEKLRPLWRHYFNNTDGLIYVDDSLDRE--RIVKAKQEFHAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGL*LFDLKNRKWYIQGTCALIGYGLY*GLDWMA 426
            IL K  +GEV++TVPTIGFN E V+YKN+ FT WDVGG + +RPLWRHY+ NTD LIYV DS D E  RI  AK E H ++ +  + ++ +LVFANKQD+  AM+  ++ E L L +LK R WYIQ TCA  G GLY GLDW++
Sbjct:   33 ILYKLMLGEVVTTVPTIGFNVETVEYKNINFTVWDVGGQDSIRPLWRHYYQNTDALIYVIDSADLEPKRIEDAKNELHTLLGEDELRDAALLVFANKQDLPKAMSTTDLTERLGLQELKKRDWYIQPTCARSGDGLYQGLDWLS 176          
BLAST of CF836295 vs. ExPASy Swiss-Prot
Match: ARF6_CHICK (ADP-ribosylation factor 6 OS=Gallus gallus GN=ARF6 PE=2 SV=3)

HSP 1 Score: 163.696 bits (413), Expect = 3.477e-40
Identity = 77/143 (53.85%), Postives = 102/143 (71.33%), Query Frame = 1
Query:    1 ILXKPFIGEVLSTVPTIGFNDEKVQYKNVIFTDWDVGGTEKLRPLWRHYFNNTDGLIYVDDSLDRERIVKAKQEFHAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGL*LFDLKNRKWYIQGTCALIGYGLY*GLDWMAS 429
            IL K  +G+ ++T+PT+GFN E V YKNV F  WDVGG +K+RPLWRHY+  T GLI+V D  DR+RI +A+QE H II D  M +++IL+FANKQD+  AM P E+ E L L  +++R WY+Q +CA  G GLY GL W+ S
Sbjct:   29 ILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTGDGLYEGLTWLTS 171          
The following BLAST results are available for this feature:
BLAST of CF836295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 161
Match NameE-valueIdentityDescription
ARF_CRYNE1.412e-4152.41ADP-ribosylation factor OS=Cryptococcus neoformans... [more]
ARF5_RAT1.844e-4153.06ADP-ribosylation factor 5 OS=Rattus norvegicus GN=... [more]
ARF5_MOUSE1.844e-4153.06ADP-ribosylation factor 5 OS=Mus musculus GN=Arf5 ... [more]
ARF5_HUMAN1.844e-4153.06ADP-ribosylation factor 5 OS=Homo sapiens GN=ARF5 ... [more]
ARF1_SCHPO1.844e-4152.41ADP-ribosylation factor 1 OS=Schizosaccharomyces p... [more]
ARF1_CATRO5.364e-4151.72ADP-ribosylation factor 1 OS=Catharanthus roseus G... [more]
ARF4_RAT2.038e-4052.38ADP-ribosylation factor 4 OS=Rattus norvegicus GN=... [more]
ARF4_MOUSE2.038e-4052.38ADP-ribosylation factor 4 OS=Mus musculus GN=Arf4 ... [more]
ARF_GIALA3.477e-4056.25ADP-ribosylation factor OS=Giardia lamblia PE=3 SV... [more]
ARF6_CHICK3.477e-4053.85ADP-ribosylation factor 6 OS=Gallus gallus GN=ARF6... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02L21_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02L21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836295 ID=CF836295; Name=CF836295; organism=Citrus sinensis; type=EST; length=462bp
ATACTGNACAAGCCCTTCATTGGTGAAGTTTTATCTACTGTTCCTACTAT
TGGTTTTAATGACGAGAAAGTTCAGTATAAGAATGTCATATTCACTGATT
GGGATGTTGGCGGAACAGAGAAATTGAGGCCACTATGGAGGCATTATTTT
AATAACACTGATGGACTGATCTATGTTGATGACTCCTTGGACCGGGAGAG
AATTGTTAAAGCAAAGCAAGAATTTCATGCCATTATCAAAGATCCTTTTA
TGCTGAACAGCGTCATTTTGGTGTTTGCCAATAAACAGGACATGAAAGGA
GCAATGACCCCAATGGAAGTATGTGAAGGATTATGACTCTTTGATCTCAA
GAACAGGAAATGGTATATTCAAGGGACTTGTGCACTTATAGGATATGGAC
TTTACTAAGGCTTGGATTGGATGGCTTCAACACTTAACGAGATGAGAGCT
GCTGGATACTCT
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