CF836295

Overview
NameCF836295
Unique NameCF836295
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length462
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836295 vs. ExPASy Swiss-Prot
Match: ARF_CANAL (ADP-ribosylation factor OS=Candida albicans GN=ARF1 PE=3 SV=4)

HSP 1 Score: 163.31 bits (412), Expect = 4.541e-40
Identity = 73/147 (49.66%), Postives = 108/147 (73.47%), Query Frame = 1
Query:    1 ILXKPFIGEVLSTVPTIGFNDEKVQYKNVIFTDWDVGGTEKLRPLWRHYFNNTDGLIYVDDSLDRERIVKAKQEFHAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGL*LFDLKNRKWYIQGTCALIGYGLY*GLDWMASTLNE 441
            IL K  +GE+++T+PTIGFN E V+YKN+ FT WDVGG +K+RPLWR+YF NT G+I+V DS DR+RI +A++E  +++ +  + ++V+LV ANKQD+  AM   E+ E + L  + NR W+IQ TCA  G GLY GL+W+++ + +
Sbjct:   33 ILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRYYFQNTQGIIFVVDSNDRDRINEAREELQSMLNEDELKDAVLLVLANKQDLPNAMNAAEITEKMGLHSIMNRPWFIQATCATTGDGLYEGLEWLSNQVGK 179          
BLAST of CF836295 vs. ExPASy Swiss-Prot
Match: ARF6_RAT (ADP-ribosylation factor 6 OS=Rattus norvegicus GN=Arf6 PE=1 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 4.541e-40
Identity = 77/143 (53.85%), Postives = 102/143 (71.33%), Query Frame = 1
Query:    1 ILXKPFIGEVLSTVPTIGFNDEKVQYKNVIFTDWDVGGTEKLRPLWRHYFNNTDGLIYVDDSLDRERIVKAKQEFHAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGL*LFDLKNRKWYIQGTCALIGYGLY*GLDWMAS 429
            IL K  +G+ ++T+PT+GFN E V YKNV F  WDVGG +K+RPLWRHY+  T GLI+V D  DR+RI +A+QE H II D  M +++IL+FANKQD+  AM P E+ E L L  +++R WY+Q +CA  G GLY GL W+ S
Sbjct:   29 ILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTS 171          
BLAST of CF836295 vs. ExPASy Swiss-Prot
Match: ARF6_PIG (ADP-ribosylation factor 6 OS=Sus scrofa GN=ARF6 PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 4.541e-40
Identity = 77/143 (53.85%), Postives = 102/143 (71.33%), Query Frame = 1
Query:    1 ILXKPFIGEVLSTVPTIGFNDEKVQYKNVIFTDWDVGGTEKLRPLWRHYFNNTDGLIYVDDSLDRERIVKAKQEFHAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGL*LFDLKNRKWYIQGTCALIGYGLY*GLDWMAS 429
            IL K  +G+ ++T+PT+GFN E V YKNV F  WDVGG +K+RPLWRHY+  T GLI+V D  DR+RI +A+QE H II D  M +++IL+FANKQD+  AM P E+ E L L  +++R WY+Q +CA  G GLY GL W+ S
Sbjct:   29 ILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTS 171          
BLAST of CF836295 vs. ExPASy Swiss-Prot
Match: ARF6_MOUSE (ADP-ribosylation factor 6 OS=Mus musculus GN=Arf6 PE=1 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 4.541e-40
Identity = 77/143 (53.85%), Postives = 102/143 (71.33%), Query Frame = 1
Query:    1 ILXKPFIGEVLSTVPTIGFNDEKVQYKNVIFTDWDVGGTEKLRPLWRHYFNNTDGLIYVDDSLDRERIVKAKQEFHAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGL*LFDLKNRKWYIQGTCALIGYGLY*GLDWMAS 429
            IL K  +G+ ++T+PT+GFN E V YKNV F  WDVGG +K+RPLWRHY+  T GLI+V D  DR+RI +A+QE H II D  M +++IL+FANKQD+  AM P E+ E L L  +++R WY+Q +CA  G GLY GL W+ S
Sbjct:   29 ILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTS 171          
BLAST of CF836295 vs. ExPASy Swiss-Prot
Match: ARF6_HUMAN (ADP-ribosylation factor 6 OS=Homo sapiens GN=ARF6 PE=1 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 4.541e-40
Identity = 77/143 (53.85%), Postives = 102/143 (71.33%), Query Frame = 1
Query:    1 ILXKPFIGEVLSTVPTIGFNDEKVQYKNVIFTDWDVGGTEKLRPLWRHYFNNTDGLIYVDDSLDRERIVKAKQEFHAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGL*LFDLKNRKWYIQGTCALIGYGLY*GLDWMAS 429
            IL K  +G+ ++T+PT+GFN E V YKNV F  WDVGG +K+RPLWRHY+  T GLI+V D  DR+RI +A+QE H II D  M +++IL+FANKQD+  AM P E+ E L L  +++R WY+Q +CA  G GLY GL W+ S
Sbjct:   29 ILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTS 171          
BLAST of CF836295 vs. ExPASy Swiss-Prot
Match: ARF4_PONAB (ADP-ribosylation factor 4 OS=Pongo abelii GN=ARF4 PE=2 SV=3)

HSP 1 Score: 163.31 bits (412), Expect = 4.541e-40
Identity = 76/147 (51.70%), Postives = 106/147 (72.11%), Query Frame = 1
Query:    1 ILXKPFIGEVLSTVPTIGFNDEKVQYKNVIFTDWDVGGTEKLRPLWRHYFNNTDGLIYVDDSLDRERIVKAKQEFHAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGL*LFDLKNRKWYIQGTCALIGYGLY*GLDWMASTLNE 441
            IL K  +GE+++T+PTIGFN E V+YKN+ FT WDVGG +++RPLW+HYF NT GLI+V DS DRERI +   E   ++    + ++V+L+FANKQD+  AM   E+ + L L  L+NR WY+Q TCA  G GLY GLDW+++ L++
Sbjct:   33 ILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAVLLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSK 179          
BLAST of CF836295 vs. ExPASy Swiss-Prot
Match: ARF4_HUMAN (ADP-ribosylation factor 4 OS=Homo sapiens GN=ARF4 PE=1 SV=3)

HSP 1 Score: 163.31 bits (412), Expect = 4.541e-40
Identity = 76/147 (51.70%), Postives = 106/147 (72.11%), Query Frame = 1
Query:    1 ILXKPFIGEVLSTVPTIGFNDEKVQYKNVIFTDWDVGGTEKLRPLWRHYFNNTDGLIYVDDSLDRERIVKAKQEFHAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGL*LFDLKNRKWYIQGTCALIGYGLY*GLDWMASTLNE 441
            IL K  +GE+++T+PTIGFN E V+YKN+ FT WDVGG +++RPLW+HYF NT GLI+V DS DRERI +   E   ++    + ++V+L+FANKQD+  AM   E+ + L L  L+NR WY+Q TCA  G GLY GLDW+++ L++
Sbjct:   33 ILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAVLLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSK 179          
BLAST of CF836295 vs. ExPASy Swiss-Prot
Match: ARF2_YEAST (ADP-ribosylation factor 2 OS=Saccharomyces cerevisiae GN=ARF2 PE=1 SV=3)

HSP 1 Score: 162.925 bits (411), Expect = 5.931e-40
Identity = 75/145 (51.72%), Postives = 106/145 (73.10%), Query Frame = 1
Query:    1 ILXKPFIGEVLSTVPTIGFNDEKVQYKNVIFTDWDVGGTEKLRPLWRHYFNNTDGLIYVDDSLDRERIVKAKQEFHAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGL*LFDLKNRKWYIQGTCALIGYGLY*GLDWMASTL 435
            +L K  +GEV++T+PTIGFN E VQYKN+ FT WDVGG +++R LWRHY+ NT+G+I+V DS DR RI +A++    ++ +  + N+V LVFANKQD+  AM+  E+ E L L  ++NR W+IQ TCA  G GLY GL+W+++ L
Sbjct:   33 VLYKLKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRNAVWLVFANKQDLPEAMSAAEITEKLGLHSIRNRPWFIQSTCATSGEGLYEGLEWLSNNL 177          
BLAST of CF836295 vs. ExPASy Swiss-Prot
Match: ARF6_XENLA (ADP-ribosylation factor 6 OS=Xenopus laevis GN=arf6 PE=2 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 7.746e-40
Identity = 77/143 (53.85%), Postives = 102/143 (71.33%), Query Frame = 1
Query:    1 ILXKPFIGEVLSTVPTIGFNDEKVQYKNVIFTDWDVGGTEKLRPLWRHYFNNTDGLIYVDDSLDRERIVKAKQEFHAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGL*LFDLKNRKWYIQGTCALIGYGLY*GLDWMAS 429
            IL K  +G+ ++T+PT+GFN E V YKNV F  WDVGG +K+RPLWRHY+  T GLI+V D  DR+RI +A+QE H II D  M +++IL+FANKQD+  AM P E+ E L L  +++R WY+Q +CA  G GLY GL W+ S
Sbjct:   29 ILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCPDRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCAASGDGLYEGLTWLTS 171          
BLAST of CF836295 vs. ExPASy Swiss-Prot
Match: ARF1_YEAST (ADP-ribosylation factor 1 OS=Saccharomyces cerevisiae GN=ARF1 PE=1 SV=3)

HSP 1 Score: 161.77 bits (408), Expect = 1.321e-39
Identity = 74/145 (51.03%), Postives = 106/145 (73.10%), Query Frame = 1
Query:    1 ILXKPFIGEVLSTVPTIGFNDEKVQYKNVIFTDWDVGGTEKLRPLWRHYFNNTDGLIYVDDSLDRERIVKAKQEFHAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGL*LFDLKNRKWYIQGTCALIGYGLY*GLDWMASTL 435
            +L K  +GEV++T+PTIGFN E VQYKN+ FT WDVGG +++R LWRHY+ NT+G+I+V DS DR RI +A++    ++ +  + N+  LVFANKQD+  AM+  E+ E L L  ++NR W+IQ TCA  G GLY GL+W++++L
Sbjct:   33 VLYKLKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPEAMSAAEITEKLGLHSIRNRPWFIQATCATSGEGLYEGLEWLSNSL 177          
The following BLAST results are available for this feature:
BLAST of CF836295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 161
Match NameE-valueIdentityDescription
ARF_CANAL4.541e-4049.66ADP-ribosylation factor OS=Candida albicans GN=ARF... [more]
ARF6_RAT4.541e-4053.85ADP-ribosylation factor 6 OS=Rattus norvegicus GN=... [more]
ARF6_PIG4.541e-4053.85ADP-ribosylation factor 6 OS=Sus scrofa GN=ARF6 PE... [more]
ARF6_MOUSE4.541e-4053.85ADP-ribosylation factor 6 OS=Mus musculus GN=Arf6 ... [more]
ARF6_HUMAN4.541e-4053.85ADP-ribosylation factor 6 OS=Homo sapiens GN=ARF6 ... [more]
ARF4_PONAB4.541e-4051.70ADP-ribosylation factor 4 OS=Pongo abelii GN=ARF4 ... [more]
ARF4_HUMAN4.541e-4051.70ADP-ribosylation factor 4 OS=Homo sapiens GN=ARF4 ... [more]
ARF2_YEAST5.931e-4051.72ADP-ribosylation factor 2 OS=Saccharomyces cerevis... [more]
ARF6_XENLA7.746e-4053.85ADP-ribosylation factor 6 OS=Xenopus laevis GN=arf... [more]
ARF1_YEAST1.321e-3951.03ADP-ribosylation factor 1 OS=Saccharomyces cerevis... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02L21_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02L21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836295 ID=CF836295; Name=CF836295; organism=Citrus sinensis; type=EST; length=462bp
ATACTGNACAAGCCCTTCATTGGTGAAGTTTTATCTACTGTTCCTACTAT
TGGTTTTAATGACGAGAAAGTTCAGTATAAGAATGTCATATTCACTGATT
GGGATGTTGGCGGAACAGAGAAATTGAGGCCACTATGGAGGCATTATTTT
AATAACACTGATGGACTGATCTATGTTGATGACTCCTTGGACCGGGAGAG
AATTGTTAAAGCAAAGCAAGAATTTCATGCCATTATCAAAGATCCTTTTA
TGCTGAACAGCGTCATTTTGGTGTTTGCCAATAAACAGGACATGAAAGGA
GCAATGACCCCAATGGAAGTATGTGAAGGATTATGACTCTTTGATCTCAA
GAACAGGAAATGGTATATTCAAGGGACTTGTGCACTTATAGGATATGGAC
TTTACTAAGGCTTGGATTGGATGGCTTCAACACTTAACGAGATGAGAGCT
GCTGGATACTCT
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