CF836295

Overview
NameCF836295
Unique NameCF836295
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length462
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836295 vs. ExPASy Swiss-Prot
Match: ARF4_ARATH (Probable ADP-ribosylation factor At2g15310 OS=Arabidopsis thaliana GN=At2g15310 PE=2 SV=3)

HSP 1 Score: 158.688 bits (400), Expect = 1.119e-38
Identity = 77/145 (53.10%), Postives = 100/145 (68.97%), Query Frame = 1
Query:    1 ILXKPFIGEVLSTVPTIGFNDEKVQYKNVIFTDWDVGGTEKLRPLWRHYFNNTDGLIYVDDSLDRERIVKAKQEFHAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGL*LFDLKNRKWYIQGTCALIGYGLY*GLDWMASTL 435
            IL K  +GEV++TVPTIGFN E V+YK + FT WD+GG EK+R LWRHYF N  GLI+V DS D ER+ +A+ E H I+ D  +  + +LVFANKQD + A+   EV   L L  L  R W IQGT A+ G GLY GL+W+++T+
Sbjct:   33 ILYKLKLGEVVTTVPTIGFNLETVEYKGINFTVWDIGGQEKIRKLWRHYFQNAQGLIFVVDSSDSERLSEARNELHRILTDNELEGACVLVFANKQDSRNALPVAEVANKLGLHSLSKRCWLIQGTSAISGQGLYEGLEWLSTTI 177          
BLAST of CF836295 vs. ExPASy Swiss-Prot
Match: ARF3_DROME (ADP-ribosylation factor 3 OS=Drosophila melanogaster GN=Arf51F PE=2 SV=3)

HSP 1 Score: 156.762 bits (395), Expect = 4.250e-38
Identity = 75/143 (52.45%), Postives = 100/143 (69.93%), Query Frame = 1
Query:    1 ILXKPFIGEVLSTVPTIGFNDEKVQYKNVIFTDWDVGGTEKLRPLWRHYFNNTDGLIYVDDSLDRERIVKAKQEFHAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGL*LFDLKNRKWYIQGTCALIGYGLY*GLDWMAS 429
            IL K  +G+ ++T+PT+GFN E V YKNV F  WDVGG +K+RPLWRHY+  T GLI+V D  DR+RI +A+ E H II D  M +++IL+FANKQD+  AM P E+ E L L  +++R WY+Q +CA  G GL  GL W+ S
Sbjct:   29 ILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARTELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLSEGLIWLTS 171          
BLAST of CF836295 vs. ExPASy Swiss-Prot
Match: ARF3_ARATH (ADP-ribosylation factor 3 OS=Arabidopsis thaliana GN=ARF3 PE=1 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 4.250e-38
Identity = 76/145 (52.41%), Postives = 103/145 (71.03%), Query Frame = 1
Query:    1 ILXKPFIGEVLSTVPTIGFNDEKVQYKNVIFTDWDVGGTEKLRPLWRHYFNNTDGLIYVDDSLDRERIVKAKQEFHAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGL*LFDLKNRKWYIQGTCALIGYGLY*GLDWMASTL 435
            IL +  +GEV+ST+PTIGFN E VQY N+ F  WD+GG   +RP WR YF NT  +IYV DS D +RI  AK+EFHAI+++  +  +V+L+FANKQD+ GA+    V E L L  +K+R+W I  TCA+ G GL+ GLDW+++TL
Sbjct:   33 ILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAVIYVVDSSDTDRIGVAKEEFHAILEEDELKGAVVLIFANKQDLPGALDDAAVTEALELHKIKSRQWAIFKTCAVKGEGLFEGLDWLSNTL 177          
BLAST of CF836295 vs. ExPASy Swiss-Prot
Match: ARF1_BRARP (ADP-ribosylation factor 1 OS=Brassica rapa subsp. pekinensis GN=ARF1 PE=2 SV=3)

HSP 1 Score: 156.762 bits (395), Expect = 4.250e-38
Identity = 76/145 (52.41%), Postives = 103/145 (71.03%), Query Frame = 1
Query:    1 ILXKPFIGEVLSTVPTIGFNDEKVQYKNVIFTDWDVGGTEKLRPLWRHYFNNTDGLIYVDDSLDRERIVKAKQEFHAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGL*LFDLKNRKWYIQGTCALIGYGLY*GLDWMASTL 435
            IL +  +GEV+ST+PTIGFN E VQY N+ F  WD+GG   +RP WR YF NT  +IYV DS D +RI  AK+EFHAI+++  +  +V+L+FANKQD+ GA+    V E L L  +K+R+W I  TCA+ G GL+ GLDW+++TL
Sbjct:   33 ILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAVIYVVDSSDTDRIGVAKEEFHAILEEEELKGAVVLIFANKQDLPGALDDAAVTEALELHKIKSRQWAIFKTCAVKGEGLFEGLDWLSNTL 177          
BLAST of CF836295 vs. ExPASy Swiss-Prot
Match: ARF2_SCHPO (Probable ADP-ribosylation factor OS=Schizosaccharomyces pombe GN=SPBC1539.08 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 6.137e-37
Identity = 74/142 (52.11%), Postives = 98/142 (69.01%), Query Frame = 1
Query:    1 ILXKPFIGEVLSTVPTIGFNDEKVQYKNVIFTDWDVGGTEKLRPLWRHYFNNTDGLIYVDDSLDRERIVKAKQEFHAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGL*LFDLKNRKWYIQGTCALIGYGLY*GLDWMA 426
            IL K  + + + T+PT+GFN E V YKN+ F  WDVGG +K+RPLWRHYF  T GLI+V DS D  RI +A+QE H II D  M + ++LV ANKQD+ GA++P ++ + L L  LK+R W +Q TCAL G GL  GL W++
Sbjct:   37 ILYKLKLNQSVVTIPTVGFNVETVTYKNIKFNVWDVGGQDKIRPLWRHYFTGTKGLIFVVDSADSNRISEARQELHRIISDREMRDCLLLVLANKQDLPGALSPAQITDVLQLDKLKDRLWNVQPTCALTGDGLLEGLAWLS 178          
BLAST of CF836295 vs. ExPASy Swiss-Prot
Match: ARFJ_DICDI (ADP-ribosylation factor J OS=Dictyostelium discoideum GN=arrJ PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 5.196e-36
Identity = 69/146 (47.26%), Postives = 101/146 (69.18%), Query Frame = 1
Query:    1 ILXKPFIGEVLSTVPTIGFNDEKVQYKNVIFTDWDVGGTEKLRPLWRHYFNNTDGLIYVDDSLDRERIVKAKQEFHAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGL*LFDLKNRKWYIQGTCALIGYGLY*GLDWMASTLN 438
            +L K  +G+V+ST+PTIGFN E ++YKN+  T WDVGG  K+RPLW+HY++ ++ +I+V DS DRER+ + K+E   ++    +  + ILVFANKQDM  AM   E+   L L  +K+RKWY+Q   A+   G+Y G DW+A++LN
Sbjct:   41 LLYKLKLGDVVSTIPTIGFNVETIEYKNLSMTVWDVGGQHKIRPLWKHYYHGSNAVIFVVDSTDRERMDEVKEEIDNLLIQDELKGTQILVFANKQDMNNAMNTAEIVNSLDLNSIKDRKWYVQPCSAIRSDGIYEGFDWVANSLN 186          
BLAST of CF836295 vs. ExPASy Swiss-Prot
Match: ARFH_DICDI (ADP-ribosylation factor H OS=Dictyostelium discoideum GN=arrH PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 1.280e-34
Identity = 68/147 (46.26%), Postives = 101/147 (68.71%), Query Frame = 1
Query:    1 ILXKPFIGEVLSTVPTIGFNDEKVQYKNVIFTDWDVGGTEKLRPLWRHYFNNTDGLIYVDDSLDRERIVKAKQEFHAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGL*LFDLKNRKWYIQGTCALIG-YGLY*GLDWMASTLN 438
            +L K  +G+++STVPTIGFN E ++YKN+  T WDVGG  K+R LW+HY++ T+ +I+V DS DRER+ + K+E   ++    +    IL+FANKQDM  AM   E+ + L L  +K+RKWY+Q   A+   +G+Y G DW+A++LN
Sbjct:   41 LLYKLKLGDIVSTVPTIGFNVETIEYKNLSMTVWDVGGQYKIRALWKHYYHGTNAIIFVVDSTDRERMDEVKEEIDTLLIQEELKGIQILIFANKQDMNNAMNTSEIVDSLNLNSIKDRKWYVQPCSAIKSPHGIYEGFDWVANSLN 187          
BLAST of CF836295 vs. ExPASy Swiss-Prot
Match: ARL1_RAT (ADP-ribosylation factor-like protein 1 OS=Rattus norvegicus GN=Arl1 PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 8.295e-34
Identity = 71/145 (48.97%), Postives = 99/145 (68.28%), Query Frame = 1
Query:    1 ILXKPFIGEVLSTVPTIGFNDEKVQYKNVIFTDWDVGGTEKLRPLWRHYFNNTDGLIYVDDSLDRERIVKAKQEFHAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGL*LFDLKNRKWYIQGTCALIGYGLY*GLDWMASTL 435
            IL +  +GEV++T+PTIGFN E V YKN+ F  WD+GG   +RP WR Y++NTD +IYV DS DR+RI  +K E  A++++  +  ++++VFANKQDM+ AMTP E+   L L  LK+RKW I  T A  G GL   ++W+  TL
Sbjct:   33 ILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTPSEMANALGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETL 177          
BLAST of CF836295 vs. ExPASy Swiss-Prot
Match: ARL1_MOUSE (ADP-ribosylation factor-like protein 1 OS=Mus musculus GN=Arl1 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 8.295e-34
Identity = 71/145 (48.97%), Postives = 99/145 (68.28%), Query Frame = 1
Query:    1 ILXKPFIGEVLSTVPTIGFNDEKVQYKNVIFTDWDVGGTEKLRPLWRHYFNNTDGLIYVDDSLDRERIVKAKQEFHAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGL*LFDLKNRKWYIQGTCALIGYGLY*GLDWMASTL 435
            IL +  +GEV++T+PTIGFN E V YKN+ F  WD+GG   +RP WR Y++NTD +IYV DS DR+RI  +K E  A++++  +  ++++VFANKQDM+ AMTP E+   L L  LK+RKW I  T A  G GL   ++W+  TL
Sbjct:   33 ILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTPSEMANALGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETL 177          
BLAST of CF836295 vs. ExPASy Swiss-Prot
Match: ARL1_BOVIN (ADP-ribosylation factor-like protein 1 OS=Bos taurus GN=ARL1 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 8.295e-34
Identity = 71/145 (48.97%), Postives = 99/145 (68.28%), Query Frame = 1
Query:    1 ILXKPFIGEVLSTVPTIGFNDEKVQYKNVIFTDWDVGGTEKLRPLWRHYFNNTDGLIYVDDSLDRERIVKAKQEFHAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGL*LFDLKNRKWYIQGTCALIGYGLY*GLDWMASTL 435
            IL +  +GEV++T+PTIGFN E V YKN+ F  WD+GG   +RP WR Y++NTD +IYV DS DR+RI  +K E  A++++  +  ++++VFANKQDM+ AMTP E+   L L  LK+RKW I  T A  G GL   ++W+  TL
Sbjct:   33 ILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTPSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETL 177          
The following BLAST results are available for this feature:
BLAST of CF836295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 161
Match NameE-valueIdentityDescription
ARF4_ARATH1.119e-3853.10Probable ADP-ribosylation factor At2g15310 OS=Arab... [more]
ARF3_DROME4.250e-3852.45ADP-ribosylation factor 3 OS=Drosophila melanogast... [more]
ARF3_ARATH4.250e-3852.41ADP-ribosylation factor 3 OS=Arabidopsis thaliana ... [more]
ARF1_BRARP4.250e-3852.41ADP-ribosylation factor 1 OS=Brassica rapa subsp. ... [more]
ARF2_SCHPO6.137e-3752.11Probable ADP-ribosylation factor OS=Schizosaccharo... [more]
ARFJ_DICDI5.196e-3647.26ADP-ribosylation factor J OS=Dictyostelium discoid... [more]
ARFH_DICDI1.280e-3446.26ADP-ribosylation factor H OS=Dictyostelium discoid... [more]
ARL1_RAT8.295e-3448.97ADP-ribosylation factor-like protein 1 OS=Rattus n... [more]
ARL1_MOUSE8.295e-3448.97ADP-ribosylation factor-like protein 1 OS=Mus musc... [more]
ARL1_BOVIN8.295e-3448.97ADP-ribosylation factor-like protein 1 OS=Bos taur... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02L21_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02L21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836295 ID=CF836295; Name=CF836295; organism=Citrus sinensis; type=EST; length=462bp
ATACTGNACAAGCCCTTCATTGGTGAAGTTTTATCTACTGTTCCTACTAT
TGGTTTTAATGACGAGAAAGTTCAGTATAAGAATGTCATATTCACTGATT
GGGATGTTGGCGGAACAGAGAAATTGAGGCCACTATGGAGGCATTATTTT
AATAACACTGATGGACTGATCTATGTTGATGACTCCTTGGACCGGGAGAG
AATTGTTAAAGCAAAGCAAGAATTTCATGCCATTATCAAAGATCCTTTTA
TGCTGAACAGCGTCATTTTGGTGTTTGCCAATAAACAGGACATGAAAGGA
GCAATGACCCCAATGGAAGTATGTGAAGGATTATGACTCTTTGATCTCAA
GAACAGGAAATGGTATATTCAAGGGACTTGTGCACTTATAGGATATGGAC
TTTACTAAGGCTTGGATTGGATGGCTTCAACACTTAACGAGATGAGAGCT
GCTGGATACTCT
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