CF836417

Overview
NameCF836417
Unique NameCF836417
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length802
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836417 vs. ExPASy Swiss-Prot
Match: ERG24_SEPLY (Delta(14)-sterol reductase OS=Septoria lycopersici GN=ERG3 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.424e-15
Identity = 39/109 (35.78%), Postives = 60/109 (55.05%), Query Frame = -3
Query:  492 SLLLTSGWWGLARHFHYVPEILAAFFWTVPALFNHF-------------------------LPYFYVIFLTILLFDRAKRDDDRCRSKYGKYWKIYCQKVPYRIIPGIY 743
            S LLT+GWWG ARH +Y+ + L ++ + +P L   +                         + YFY+++  ILL  R +RD+ +CR KYG +W+ YCQ V +RI+PG+Y
Sbjct:  404 SRLLTTGWWGTARHINYLGDWLMSWSYCLPTLAAGYKLTPTILFENSRLVSTDGMKGAGIPITYFYMLYFAILLIHRERRDEAKCRRKYGAHWEKYCQIVRWRILPGVY 512          
BLAST of CF836417 vs. ExPASy Swiss-Prot
Match: ERG24_ARATH (Delta(14)-sterol reductase OS=Arabidopsis thaliana GN=FK PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 2.424e-15
Identity = 36/82 (43.90%), Postives = 56/82 (68.29%), Query Frame = -3
Query:  492 LLTSGWWGLARHFHYVPEILAAFFWTVPALFNHFLPYFYVIFLTILLFDRAKRDDDRCRSKYGKYWKIYCQKVPYRIIPGIY 737
            LL SG+WG+ARH +Y+ +++ A  +++P   +  +PYFY I+L ILL  R +RD+ RC  KY + W  Y + VP+RI+P +Y
Sbjct:  288 LLVSGYWGIARHCNYLGDLMLALSFSLPCGISSPVPYFYPIYLLILLIWRERRDEVRCAEKYKEIWAEYLRLVPWRILPYVY 369          
BLAST of CF836417 vs. ExPASy Swiss-Prot
Match: ERG24_YEAST (Delta(14)-sterol reductase OS=Saccharomyces cerevisiae GN=ERG24 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.680e-14
Identity = 33/82 (40.24%), Postives = 50/82 (60.98%), Query Frame = -3
Query:  492 LLTSGWWGLARHFHYVPEILAAFFWTVPALFNHFLPYFYVIFLTILLFDRAKRDDDRCRSKYGKYWKIYCQKVPYRIIPGIY 737
            LL  GWW  ++H +Y  + L +  W +   F   L Y+Y ++   LL  R +RD+ +CR KYG+ W+ Y +KVPY+IIP +Y
Sbjct:  357 LLCDGWWAKSQHINYFGDWLISLSWCLATWFQTPLTYYYSLYFATLLLHRQQRDEHKCRLKYGENWEEYERKVPYKIIPYVY 438          
BLAST of CF836417 vs. ExPASy Swiss-Prot
Match: ERG4_YEAST (Delta(24(24(1)))-sterol reductase OS=Saccharomyces cerevisiae GN=ERG4 PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 3.500e-14
Identity = 36/92 (39.13%), Postives = 51/92 (55.43%), Query Frame = -3
Query:  492 TSSGETKQSLLLTSGWWGLARHFHYVPEILAAFFWTVPALFNHFLPYFYVIFLTILLFDRAKRDDDRCRSKYGKYWKIYCQKVPYRIIPGIY 767
            TS+G    S LL  GW+ LAR  HY  +   +  W +   FN   P+F+ +F  ++L  RA RD  +C+ KYGK W  YC+  PY  IP ++
Sbjct:  386 TSNG----SYLLIDGWYTLARKIHYTADWTQSLVWALSCGFNSVFPWFFPVFFLVVLIHRAFRDQAKCKRKYGKDWDEYCKHCPYVFIPYVF 473          
BLAST of CF836417 vs. ExPASy Swiss-Prot
Match: ERG24_FUSSO (Delta(14)-sterol reductase OS=Fusarium solani subsp. pisi PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.330e-13
Identity = 42/118 (35.59%), Postives = 61/118 (51.69%), Query Frame = -3
Query:  492 KQSLLLTSGWWGLARHFHYVPEILAAFFWTVP-----------------AL---------------FNHFLPYFYVIFLTILLFDRAKRDDDRCRSKYGKYWKIYCQKVPYRIIPGIY 749
            K S LL SGWWG+ARH +Y+ + + ++ + +P                 AL               +   + YFY+++  ILL  R +RDDD+C  KYG+ W+ Y + V YRIIPGIY
Sbjct:  368 KGSKLLISGWWGIARHINYLGDWIQSWPYCLPTGLAGYQILNAGAQAEGALVMRDGREVVQGEAKGWGMLITYFYILYFAILLIHRERRDDDKCHRKYGEDWEKYRKIVRYRIIPGIY 485          
BLAST of CF836417 vs. ExPASy Swiss-Prot
Match: STS1_SCHPO (Delta(24(24(1)))-sterol reductase OS=Schizosaccharomyces pombe GN=sts1 PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 3.276e-12
Identity = 33/82 (40.24%), Postives = 45/82 (54.88%), Query Frame = -3
Query:  492 LLTSGWWGLARHFHYVPEILAAFFWTVPALFNHFLPYFYVIFLTILLFDRAKRDDDRCRSKYGKYWKIYCQKVPYRIIPGIY 737
            LLTSGW+  AR  HY  +   +  W +   F   LPYFY  F  ++L  R  RD  +C++KYG  +  YC+  PY  IP I+
Sbjct:  372 LLTSGWYRYARKIHYTADFFQSLSWALITGFQSPLPYFYPCFFFVVLVHRVSRDIKKCKAKYGADFDEYCRICPYLFIPYIF 453          
BLAST of CF836417 vs. ExPASy Swiss-Prot
Match: ERG24_NEUCR (Delta(14)-sterol reductase OS=Neurospora crassa GN=erg-3 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.279e-12
Identity = 37/116 (31.90%), Postives = 57/116 (49.14%), Query Frame = -3
Query:  492 SLLLTSGWWGLARHFHYVPEILAAFFWTVPALFNHF--------------------------------LPYFYVIFLTILLFDRAKRDDDRCRSKYGKYWKIYCQKVPYRIIPGIY 743
            S L+TSGWWG+ARH +Y+ + L ++ +++P     +                                  YFY+++  ILL  R  RDD++C  KYG  W+ Y + V +RI+PGIY
Sbjct:  375 SRLITSGWWGIARHINYLGDWLQSWPYSLPTGIAGYQILSAGSNAPGAITMLDGREVVQGEARGWGIVFTYFYILYFAILLIHRDLRDDEKCSKKYGDDWEKYKKLVKWRIVPGIY 490          
The following BLAST results are available for this feature:
BLAST of CF836417 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
ERG24_SEPLY2.424e-1535.78Delta(14)-sterol reductase OS=Septoria lycopersici... [more]
ERG24_ARATH2.424e-1543.90Delta(14)-sterol reductase OS=Arabidopsis thaliana... [more]
ERG24_YEAST2.680e-1440.24Delta(14)-sterol reductase OS=Saccharomyces cerevi... [more]
ERG4_YEAST3.500e-1439.13Delta(24(24(1)))-sterol reductase OS=Saccharomyces... [more]
ERG24_FUSSO1.330e-1335.59Delta(14)-sterol reductase OS=Fusarium solani subs... [more]
STS1_SCHPO3.276e-1240.24Delta(24(24(1)))-sterol reductase OS=Schizosacchar... [more]
ERG24_NEUCR4.279e-1231.90Delta(14)-sterol reductase OS=Neurospora crassa GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02O23_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02O23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836417 ID=CF836417; Name=CF836417; organism=Citrus sinensis; type=EST; length=802bp
TTTTTTTTTTTTTTTTTGATAATCCAACTCATTTCGATTTCGACCATATT
TTAATCCAACTGAACCTACATTCCATTAGAGGAAAGATCAAAACATAAGC
CAAACTAACACCATCTCCTTTTGATGCCCAAGTAGAAATAACGCATAACT
AGAAGCCAATTCAACTCAAAACAATAGAGCAGTTCTACGAAATACACTAA
TCTGAACCATAGTTATAATATCCCTTCATGCACAATTATCCCTAGCTCAT
CAAAAGCTGCAAAAGTGAAACCAAGGAACTAATGATCTAAACATTCATCA
CAGGAATACGCCAAATGCTTCCTCCTACATCACATCAAAACTTACAAGCA
CTCGAGGAAGTGTCTAGTCAGAGACAACAGTTAGGCGGAGATAAATGGTA
CATGGACTCACGAACATAACCATCTGATATGAAGAGGCCAAGAAATTTGA
AATGAGCCACGGTCAGAGATTCAACATTGATAAATGTCTCAGTAGATTCC
AGGAATGATCCGGTAGGGAACCTTCTGGCAGTATATTTTCCAGTATTTCC
CGTATTTGGATCGACATCTATCATCGTCTCTTTTAGCTCGGTCGAAAAGA
AGGATCGTAAGAAATATAACGTAGAAGTATGGTAGAAAATGATTAAAAAG
AGCTGGAACAGTCCAAAAAAACGCAGCCAATATTTCAGGTACATAATGGA
AATGACGGGCCAAACCCCACCAGCCTGAGGTTAAAAGAAGGCTTTGTTTT
GTTTCCCCAGATGATGTTGTGTATGAAGCAACAATCTTTGATGGTGCTTT
GC
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