CF836429

Overview
NameCF836429
Unique NameCF836429
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length793
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836429 vs. ExPASy Swiss-Prot
Match: CFTR_CARPS (Cystic fibrosis transmembrane conductance regulator OS=Carollia perspicillata GN=CFTR PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.390e-23
Identity = 78/282 (27.66%), Postives = 127/282 (45.04%), Query Frame = -3
Query:    3 SRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFCLATLFMILLPSSIIKPEXXXXXXXXXXXXXXXLFWAIYMSCFVENRMVSVERIKQFTEIPSEAAWKMEDRLPPPN-------------------WPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEE 791
            S++L +L+S  ++P+  H   S+ G+ T+RAFG+Q  F       +N +    F    +  W   R+E++    F   T   IL                        L WA+  S  V++ M SV R+ +F ++P+E +   +   P  +                   WP  G + + +L  +Y  N   +L+ I+ SI  G+++G++GRTGSGKSTL+    RL+  +                   R  FG+IPQ+  +F GT R N+DP  Q++DEE
Sbjct: 1038 SQQLKQLESEGRSPIFTHLVTSLRGLWTLRAFGRQPYFEALFHKALNLHTANWFLYLSTLRWFQMRIEMIFVIFFIAVTFISILTTGE--GEGRVGIILTLAMNIMSTLQWAMNSSIDVDSLMRSVSRVFKFIDMPTEESKSTKLIKPSKDDKLTKVMIIENQHVKKDDLWPLGGQMTIKNLIAKYTDNGNAILENISFSISPGQRVGLLGRTGSGKSTLLSALLRLLN-TEGEIQIDGVSWDSVTLQQWRKAFGVIPQKVFIFSGTFRKNLDPYEQWNDEE 1316          
BLAST of CF836429 vs. ExPASy Swiss-Prot
Match: CFTR_MOUSE (Cystic fibrosis transmembrane conductance regulator OS=Mus musculus GN=Cftr PE=1 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 2.007e-22
Identity = 77/282 (27.30%), Postives = 126/282 (44.68%), Query Frame = -3
Query:    3 SRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFCLATLFMILLPSSIIKPEXXXXXXXXXXXXXXXLFWAIYMSCFVENRMVSVERIKQFTEIPSEAAW-------------------KMEDRLPPPNWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEE 791
            +++L +L+S  ++P+  H   S+ G+ T+RAF +QT F       +N +    F    +  W   R++++    F + T   IL                        L WA+  S   ++ M SV R+ +F +I +E +                    K E       WP+ G + + DL V+Y  +   VL+ I+ SI  G+++G++GRTGSGKSTL+  F R++                      R  FG+I Q+  +F GT R N+DP G++ DEE
Sbjct: 1032 AQQLKQLESEGRSPIFTHLVTSLKGLWTLRAFRRQTYFETLFHKALNLHTANWFMYLATLRWFQMRIDMIFVLFFIVVTFISILTTGE--GEGTAGIILTLAMNIMSTLQWAVNSSIDTDSLMRSVSRVFKFIDIQTEESMYTQIIKELPREGSSDVLVIKNEHVKKSDIWPSGGEMVVKDLTVKYMDDGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRMLN-IKGDIEIDGVSWNSVTLQEWRKAFGVITQKVFIFSGTFRQNLDPNGKWKDEE 1310          
BLAST of CF836429 vs. ExPASy Swiss-Prot
Match: CFTR_RAT (Cystic fibrosis transmembrane conductance regulator OS=Rattus norvegicus GN=Cftr PE=1 SV=3)

HSP 1 Score: 105.916 bits (263), Expect = 2.621e-22
Identity = 77/282 (27.30%), Postives = 125/282 (44.33%), Query Frame = -3
Query:    3 SRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFCLATLFMILLPSSIIKPEXXXXXXXXXXXXXXXLFWAIYMSCFVENRMVSVERIKQFTEI-------------------PSEAAWKMEDRLPPPNWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEE 791
            S++L +L+S  ++P+  H   S+ G+ T+RAF +QT F       +N +    F    +  W   R++++    F + T   IL                        L WA+  S   ++ M SV R+ +F +I                   P+    K E       WP+ G + + DL V+Y  +   +L+ I+ SI  G+++G++GRTGSGKSTL+  F R++                      R  FG+I Q+  +F GT R N+DP G++ DEE
Sbjct: 1032 SQQLKQLESEGRSPIFTHLVTSLKGLWTLRAFRRQTYFETLFHKALNLHTANWFMYLATLRWFQMRIDMIFVLFFIVVTFISILTTGE--GEGTTGIILTLAMNIMSTLQWAVNSSIDTDSLMRSVSRVFKFIDIQTEESICTKIMKELHSEDSPNALVIKNEHVKKCDTWPSGGEMVVKDLTVKYVDDGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRMLN-IKGEIQIDGVSWNSMTLQEWRKAFGVITQKVFIFSGTFRQNLDPNGKWRDEE 1310          
BLAST of CF836429 vs. ExPASy Swiss-Prot
Match: ABC1_SCHPO (ATP-binding cassette transporter abc1 OS=Schizosaccharomyces pombe GN=abc1 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 8.431e-21
Identity = 76/264 (28.79%), Postives = 115/264 (43.56%), Query Frame = -3
Query:    3 RELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFCLATLFMILLPSSIIKPEXXXXXXXXXXXXXXXLFWAIYMSCFVENRMVSVERIKQFTEIPSEAAWKMEDRLPPPN--WPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEE 788
            ++LT L S   +PV     E++ G+  IRAF K+  F  EN+  ++  ++  + +   N WL  R + +         L  +L  +  I P                +   +  +  +   + +  R+ ++  +PSE   +      P N  WP  G+V + +L V Y      VL+ I L I   EKI +VGRTGSGKST+     R                       LR R  +IPQ+PVL  GTVRSN+DP  +Y D E
Sbjct: 1025 KQLTSLQSSRTSPVFTMLGETLGGITVIRAFKKEKIFEHENMAFIDDMIQPLYISFAINRWLAIRTDGISGLVGFSTGLIALLRQN--IPPGLVGFSLNSAIGFNISVLVFVRANNEILTYINNFRRLYEYMLLPSEKN-ESSCLTKPMNKEWPTLGHVSIKNLTVSYSIGQAAVLEDINLEILPKEKIAIVGRTGSGKSTMGLTLLRFTMIMSGAVEVDGIDINSLDLEVLRQRISLIPQDPVLISGTVRSNLDPFEEYGDGE 1285          
The following BLAST results are available for this feature:
BLAST of CF836429 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 114
Match NameE-valueIdentityDescription
CFTR_CARPS1.390e-2327.66Cystic fibrosis transmembrane conductance regulato... [more]
CFTR_MOUSE2.007e-2227.30Cystic fibrosis transmembrane conductance regulato... [more]
CFTR_RAT2.621e-2227.30Cystic fibrosis transmembrane conductance regulato... [more]
ABC1_SCHPO8.431e-2128.79ATP-binding cassette transporter abc1 OS=Schizosac... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02P06_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02P06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836429 ID=CF836429; Name=CF836429; organism=Citrus sinensis; type=EST; length=793bp
ATTTCTTCATCTGAATACTGACCAATTGGATCAATGTTGCTTCTCACAGT
TCCTTCAAAAAGGACAGGTTCTTGAGGAATGATCCCAAAGCGAGACCTTA
GGTCATGAAGCCCCAACAATGAAATGTCGATTCCATCAATAATGATTCTC
CCTCCTGAAGGCTCCACCAGCCTAAAGAAAACTTGAATTAAAGTTGACTT
CCCACTTCCTGTACGCCCAACTACACCAATCTTCTCTCCCCCGTGAATGC
TGAGTGTAATACCTTTGAGAACCAGAGGAGTGTTGGAGCGATATCTGACC
TGCAAGTCTATGAGGTCCACATTGCCATGAGCAGGCCAATTTGGAGGTGG
AAGACGATCTTCCATCTTCCATGCTGCTTCTGAAGGAATTTCTGTAAACT
GCTTTATCCTTTCAACAGAGACCATCCGGTTTTCCACAAAGCAACTCATG
TATATGGCCCAGAATAGCACACCATTGAGGGACAACCCATATGAGAGTGA
CAAACCAACATTCTCTGGTTTTATGATACTGCTGGGTAACAGGATCATAA
ACAAAGTGGCGAGGCAGAAAGTAAAACTCCCAAGTAGCTCCAGACGGAAA
CCCAACCACTCATTGGACCCATTGTTGTGGAAATCCATGCGCAAATTGCC
ATTAACTCTATTAACATTTTCCTGATAAAATGTAGTTTGCTTTCCAAAAG
CACGGATTGTCATAACACCAGATATGCTTTCTGAAAAATGATGAATGACA
GGTGCTTTGGTGATTGAGTCAAGGCGTGTTAATTCTCTTGATG
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