CF836429
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF836429 vs. ExPASy Swiss-Prot
Match: CFTR_CARPS (Cystic fibrosis transmembrane conductance regulator OS=Carollia perspicillata GN=CFTR PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.390e-23 Identity = 78/282 (27.66%), Postives = 127/282 (45.04%), Query Frame = -3 Query: 3 SRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFCLATLFMILLPSSIIKPEXXXXXXXXXXXXXXXLFWAIYMSCFVENRMVSVERIKQFTEIPSEAAWKMEDRLPPPN-------------------WPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEE 791 S++L +L+S ++P+ H S+ G+ T+RAFG+Q F +N + F + W R+E++ F T IL L WA+ S V++ M SV R+ +F ++P+E + + P + WP G + + +L +Y N +L+ I+ SI G+++G++GRTGSGKSTL+ RL+ + R FG+IPQ+ +F GT R N+DP Q++DEE Sbjct: 1038 SQQLKQLESEGRSPIFTHLVTSLRGLWTLRAFGRQPYFEALFHKALNLHTANWFLYLSTLRWFQMRIEMIFVIFFIAVTFISILTTGE--GEGRVGIILTLAMNIMSTLQWAMNSSIDVDSLMRSVSRVFKFIDMPTEESKSTKLIKPSKDDKLTKVMIIENQHVKKDDLWPLGGQMTIKNLIAKYTDNGNAILENISFSISPGQRVGLLGRTGSGKSTLLSALLRLLN-TEGEIQIDGVSWDSVTLQQWRKAFGVIPQKVFIFSGTFRKNLDPYEQWNDEE 1316
BLAST of CF836429 vs. ExPASy Swiss-Prot
Match: CFTR_MOUSE (Cystic fibrosis transmembrane conductance regulator OS=Mus musculus GN=Cftr PE=1 SV=2) HSP 1 Score: 106.301 bits (264), Expect = 2.007e-22 Identity = 77/282 (27.30%), Postives = 126/282 (44.68%), Query Frame = -3 Query: 3 SRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFCLATLFMILLPSSIIKPEXXXXXXXXXXXXXXXLFWAIYMSCFVENRMVSVERIKQFTEIPSEAAW-------------------KMEDRLPPPNWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEE 791 +++L +L+S ++P+ H S+ G+ T+RAF +QT F +N + F + W R++++ F + T IL L WA+ S ++ M SV R+ +F +I +E + K E WP+ G + + DL V+Y + VL+ I+ SI G+++G++GRTGSGKSTL+ F R++ R FG+I Q+ +F GT R N+DP G++ DEE Sbjct: 1032 AQQLKQLESEGRSPIFTHLVTSLKGLWTLRAFRRQTYFETLFHKALNLHTANWFMYLATLRWFQMRIDMIFVLFFIVVTFISILTTGE--GEGTAGIILTLAMNIMSTLQWAVNSSIDTDSLMRSVSRVFKFIDIQTEESMYTQIIKELPREGSSDVLVIKNEHVKKSDIWPSGGEMVVKDLTVKYMDDGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRMLN-IKGDIEIDGVSWNSVTLQEWRKAFGVITQKVFIFSGTFRQNLDPNGKWKDEE 1310
BLAST of CF836429 vs. ExPASy Swiss-Prot
Match: CFTR_RAT (Cystic fibrosis transmembrane conductance regulator OS=Rattus norvegicus GN=Cftr PE=1 SV=3) HSP 1 Score: 105.916 bits (263), Expect = 2.621e-22 Identity = 77/282 (27.30%), Postives = 125/282 (44.33%), Query Frame = -3 Query: 3 SRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFCLATLFMILLPSSIIKPEXXXXXXXXXXXXXXXLFWAIYMSCFVENRMVSVERIKQFTEI-------------------PSEAAWKMEDRLPPPNWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEE 791 S++L +L+S ++P+ H S+ G+ T+RAF +QT F +N + F + W R++++ F + T IL L WA+ S ++ M SV R+ +F +I P+ K E WP+ G + + DL V+Y + +L+ I+ SI G+++G++GRTGSGKSTL+ F R++ R FG+I Q+ +F GT R N+DP G++ DEE Sbjct: 1032 SQQLKQLESEGRSPIFTHLVTSLKGLWTLRAFRRQTYFETLFHKALNLHTANWFMYLATLRWFQMRIDMIFVLFFIVVTFISILTTGE--GEGTTGIILTLAMNIMSTLQWAVNSSIDTDSLMRSVSRVFKFIDIQTEESICTKIMKELHSEDSPNALVIKNEHVKKCDTWPSGGEMVVKDLTVKYVDDGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRMLN-IKGEIQIDGVSWNSMTLQEWRKAFGVITQKVFIFSGTFRQNLDPNGKWRDEE 1310
BLAST of CF836429 vs. ExPASy Swiss-Prot
Match: ABC1_SCHPO (ATP-binding cassette transporter abc1 OS=Schizosaccharomyces pombe GN=abc1 PE=2 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 8.431e-21 Identity = 76/264 (28.79%), Postives = 115/264 (43.56%), Query Frame = -3 Query: 3 RELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFCLATLFMILLPSSIIKPEXXXXXXXXXXXXXXXLFWAIYMSCFVENRMVSVERIKQFTEIPSEAAWKMEDRLPPPN--WPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEE 788 ++LT L S +PV E++ G+ IRAF K+ F EN+ ++ ++ + + N WL R + + L +L + I P + + + + + + R+ ++ +PSE + P N WP G+V + +L V Y VL+ I L I EKI +VGRTGSGKST+ R LR R +IPQ+PVL GTVRSN+DP +Y D E Sbjct: 1025 KQLTSLQSSRTSPVFTMLGETLGGITVIRAFKKEKIFEHENMAFIDDMIQPLYISFAINRWLAIRTDGISGLVGFSTGLIALLRQN--IPPGLVGFSLNSAIGFNISVLVFVRANNEILTYINNFRRLYEYMLLPSEKN-ESSCLTKPMNKEWPTLGHVSIKNLTVSYSIGQAAVLEDINLEILPKEKIAIVGRTGSGKSTMGLTLLRFTMIMSGAVEVDGIDINSLDLEVLRQRISLIPQDPVLISGTVRSNLDPFEEYGDGE 1285 The following BLAST results are available for this feature:
BLAST of CF836429 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 114
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Sequences
The
following sequences are available for this feature:
EST sequence >CF836429 ID=CF836429; Name=CF836429; organism=Citrus sinensis; type=EST; length=793bpback to top |