CF836429

Overview
NameCF836429
Unique NameCF836429
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length793
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11050 contig Csv1_Contig11050:216..1008. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836429 vs. ExPASy Swiss-Prot
Match: ABCCC_DICDI (ABC transporter C family member 12 OS=Dictyostelium discoideum GN=abcC12 PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.478e-41
Identity = 97/263 (36.88%), Postives = 139/263 (52.85%), Query Frame = -3
Query:    3 SRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFCLATLFMILLPSSIIKPEXXXXXXXXXXXXXXXLFWAIYMSCFVENRMVSVERIKQFTEIPSEAAWKMEDRLPPPNWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEE 791
            SR L R+++IT++P+ +HFSE+++GV++IRA+ KQ     +N  R++ N          N WLG RL+ LG+     + +F I L    I P                L   +  +   E +M SVERI Q+     EA   ++D  P P+WP +G++   +L +RYR     VLKGIT  I   EKIG+VGRTG+GKS+++   FRL+E S                  LR    IIPQ+PVLF GT+R N+DP  +  D E
Sbjct:  891 SRGLQRIEAITRSPIFNHFSETLNGVVSIRAYKKQQENILKNQKRLDDNNNCYLTLQAMNRWLGLRLDFLGNLIVFFSCIF-ITLKKDTISPSDVGLVLSYALSITSNLNQGVLQAADTETKMNSVERISQYIRGAVEAPQIIDDCRPSPDWPINGSIKFDNLVMRYREGLDPVLKGITCEIKAKEKIGIVGRTGAGKSSIVLALFRLIEASEGSISIDGENIAKFGLKDLRRNLAIIPQDPVLFSGTLRENLDPFNECPDHE 1152          
BLAST of CF836429 vs. ExPASy Swiss-Prot
Match: ABCC3_DICDI (ABC transporter C family member 3 OS=Dictyostelium discoideum GN=abcC3 PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.478e-41
Identity = 99/263 (37.64%), Postives = 140/263 (53.23%), Query Frame = -3
Query:    3 SRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFCLATLFMILLPSSIIKPEXXXXXXXXXXXXXXXLFWAIYMSCFVENRMVSVERIKQFTEIPSEAAWKMEDRLPPPNWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEE 791
            SREL RL++I+++P+  HFSE++ GV++IRA+ K+      N  R++ N +        N+WLG RL+LL +     A LF I +    I                  L  A   +   E +M SVERI  + + P EA   +ED  P P+WP HG +   +L +RYR     VLKGI+  I   EKIG+VGRTG+GKS+++   FRL+E S                  LR    IIPQ+PVLF GT+R NIDP  + +D++
Sbjct:  906 SRELQRLEAISRSPIFSHFSETLGGVVSIRAYRKKEENILTNQFRLDNNNKCYLTLQAMNQWLGLRLDLLANLVTFFACLF-ITIDRDTISAANVGLSLSYALSLTGNLNRATLQAADTETKMNSVERITHYIKGPVEALQIVEDHRPAPDWPPHGAITFDNLVMRYREGLDPVLKGISCEIKAKEKIGIVGRTGAGKSSIVLALFRLIEASEGAILIDGENIAKFGLKDLRRNLAIIPQDPVLFSGTLRENIDPFNEKTDDQ 1167          
BLAST of CF836429 vs. ExPASy Swiss-Prot
Match: ABCCA_DICDI (ABC transporter C family member 10 OS=Dictyostelium discoideum GN=abcC10 PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 4.300e-41
Identity = 97/263 (36.88%), Postives = 140/263 (53.23%), Query Frame = -3
Query:    3 SRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFCLATLFMILLPSSIIKPEXXXXXXXXXXXXXXXLFWAIYMSCFVENRMVSVERIKQFTEIPSEAAWKMEDRLPPPNWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEE 791
            SR L R+++IT++P+ +HFSE+++GV++IRA+ KQ      N  R++ N          N WLG RL+ L +     A +F I +    I P                L +A   +   E +M SVERI Q+     EA   ++D  P P+WP +G++   +L +RYR     VLKGIT  I   EKIG+VGRTG+GKS+++   FRL+E S                  LR    IIPQ+PVLF GT+R N+DP  + S+E+
Sbjct:  897 SRGLQRIEAITRSPIFNHFSETLNGVVSIRAYKKQQENILINQKRLDDNNNCYLTLQAMNRWLGLRLDFLANLITFFACIF-ITIDKDTISPANVGLALGYALSLTGNLNYAALQAADTETKMNSVERISQYIRGAVEAPQIIDDCRPSPDWPINGSIKFDNLVMRYREGLDPVLKGITCEIKAKEKIGIVGRTGAGKSSIVLALFRLIEASEGSISIDGENIAKFGLKDLRRNLAIIPQDPVLFSGTLRENLDPFNERSEED 1158          
BLAST of CF836429 vs. ExPASy Swiss-Prot
Match: AB1C_ARATH (ABC transporter C family member 1 OS=Arabidopsis thaliana GN=ABCC1 PE=1 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.134e-40
Identity = 91/267 (34.08%), Postives = 139/267 (52.06%), Query Frame = -3
Query:    3 SRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFCLATLFMILLPSSIIKPEXXXXXXXXXXXXXXXLFWAIY----MSCFVENRMVSVERIKQFTEIPSEAAWKMEDRLPPPNWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEE 791
            SRE+ R+DS T++PV   F E+++G+ +IRA+       + N   ++ N+R    N  +N WLG RLE+LG     L     ++        +               +  ++     ++   EN + SVER+  + EIPSEA   +E+  PPP WP+ G++   D+ +RYR   P VL G++  I   +K+G+VGRTG+GKS+L+   FR+VE                    LR   GIIPQ PVLF GTVR N+DP  +++D +
Sbjct: 1076 SREIKRMDSTTRSPVYAQFGEALNGLSSIRAYKAYDRMAEINGRSMDNNIRFTLVNMAANRWLGIRLEVLGGLMVWLTASLAVMQNGKAANQQAYASTMGLLLSYALSITSSLTAVLRLASLAENSLNSVERVGNYIEIPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGVSFLISPMDKVGIVGRTGAGKSSLLNALFRIVELEKGRILIDECDIGRFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFSEHNDAD 1342          
BLAST of CF836429 vs. ExPASy Swiss-Prot
Match: MRP5_HUMAN (Multidrug resistance-associated protein 5 OS=Homo sapiens GN=ABCC5 PE=1 SV=2)

HSP 1 Score: 165.622 bits (418), Expect = 2.787e-40
Identity = 100/263 (38.02%), Postives = 139/263 (52.85%), Query Frame = -3
Query:    3 RELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFCLATLFMILLPSSIIKPEXXXXXXXXXXXXXXXLFWAIYMSCFVENRMVSVERIKQFTEIPS-EAAWKMEDRLPPPNWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEE 788
            REL RLD+IT++P + H + SI G+ TI A+ K   F       ++ N    F    +  WL  RL+L+ S      T  MI+L    I P                  + + ++   E R  SVERI  + +  S EA  +++++ P P+WP  G V   + ++RYR N PLVLK ++ +I   EKIG+VGRTGSGKS+L    FRLVE S                  LRS+  IIPQEPVLF GTVRSN+DP  QY++++
Sbjct: 1037 RELKRLDNITQSPFLSHITSSIQGLATIHAYNKGQEFLHRYQELLDDNQAPFFLFTCAMRWLAVRLDLI-SIALITTTGLMIVLMHGQIPPAYAGLAISYAVQLTGLFQFTVRLASETEARFTSVERINHYIKTLSLEAPARIKNKAPSPDWPQEGEVTFENAEMRYRENLPLVLKKVSFTIKPKEKIGIVGRTGSGKSSLGMALFRLVELSGGCIKIDGVRISDIGLADLRSKLSIIPQEPVLFSGTVRSNLDPFNQYTEDQ 1298          
BLAST of CF836429 vs. ExPASy Swiss-Prot
Match: YH85_SCHPO (Uncharacterized ABC transporter ATP-binding protein/permease C359.05 OS=Schizosaccharomyces pombe GN=SPBC359.05 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 4.754e-40
Identity = 96/264 (36.36%), Postives = 135/264 (51.14%), Query Frame = -3
Query:    3 SRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFT-FCLATLFMILLPSSIIKPEXXXXXXXXXXXXXXXLFWAIYMSCFVENRMVSVERIKQFTEIPSEAAWKMEDRLPPPNWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEE 791
            SREL RLD++T++P+  H  ES+SG+ TIRA+G Q TF +EN  R++ N R+ F    S+ W   R+E +G    FC A   ++        P                L + +  S   EN  VSVERI ++  + SEA   + +  PP  WP  G V       +YR +    L  I + I   EKIG+VGRTG+GKSTL    FR++EP+                  LRSR  IIPQE  +FEG +R N+DP  + +D++
Sbjct: 1068 SRELKRLDNVTRSPLYAHVQESLSGLSTIRAYGMQETFVEENDLRIDTNHRVWFMFFSSSRWQAIRVECIGDLIIFCTAFYGILSAIKGSPNPGLVGFSLSYAIQITQGLSFIVQQSVDAENNTVSVERILEYINVKSEAPEIIPENRPPCEWPTDGAVSFNHYSAKYREDLSFALNNINIEISPREKIGIVGRTGAGKSTLAMALFRIIEPTEGKIEIDNEDITKFGLYDLRSRLSIIPQESQIFEGNIRENLDPNHRLTDKK 1331          
BLAST of CF836429 vs. ExPASy Swiss-Prot
Match: MRP5_RAT (Multidrug resistance-associated protein 5 OS=Rattus norvegicus GN=Abcc5 PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.383e-39
Identity = 99/263 (37.64%), Postives = 139/263 (52.85%), Query Frame = -3
Query:    3 RELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFCLATLFMILLPSSIIKPEXXXXXXXXXXXXXXXLFWAIYMSCFVENRMVSVERIKQFTEIPS-EAAWKMEDRLPPPNWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEE 788
            REL RLD+IT++P + H + SI G+ TI A+ K+  F       ++ N    F    +  WL  RL+L+ S      T  MI+L    I                    + + ++   E R  SVERI  + +  S EA  +++++ PP +WP  G +   + ++RYR N PLVLK ++ +I   EKIG+VGRTGSGKS+L    FRLVE S                  LRS+  IIPQEPVLF GTVRSN+DP  QY++E+
Sbjct: 1036 RELKRLDNITQSPFLSHITSSIQGLATIHAYNKRQEFLHRYQELLDDNQAPFFLFTCAMRWLAVRLDLI-SIALITTTGLMIVLMHGQIPSAYAGLAISYAVQLTGLFQFTVRLASETEARFTSVERINHYIKTLSLEAPARIKNKAPPHDWPQEGEITFENAEMRYRENLPLVLKKVSFTIKPKEKIGIVGRTGSGKSSLGMALFRLVELSGGCIKIDGVRISDIGLADLRSKLTIIPQEPVLFSGTVRSNLDPFNQYTEEQ 1297          
BLAST of CF836429 vs. ExPASy Swiss-Prot
Match: NFT1_YEAST (ABC transporter NFT1 OS=Saccharomyces cerevisiae GN=NFT1 PE=1 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 7.590e-38
Identity = 88/261 (33.72%), Postives = 144/261 (55.17%), Query Frame = -3
Query:    9 SRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFCLATLFMILLPSSIIKPEXXXXXXXXXXXXXXXLFWAIYMSCFVENRMVSVERIKQFTEIPSEAAWKMEDRLPPPNWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSD 791
            SREL R+D+I  +P+   F+E+I GV TIRA   +  F  +++  ++ +    F+ N + EW+ +R++++G+     +++ MI++ +S +                    W I +   VE  M SVERIK++T+IPSE+   +    PP NWP  G+V+L +L +RY  ++   L  ++  +  G K+G+VGRTG+GKS++I   +RL +                    LR+    IPQ+P LF+GTVRSN+DP  +YSD
Sbjct: 1132 SRELKRIDNINISPIHQLFAEAIKGVTTIRALADERRFITQSLVAIDRSNAPFFYLNMATEWITYRVDIIGTLVLFSSSV-MIIMKASYLDAGLAGILLSNAFSFTETAQWIIKVFSSVELLMSSVERIKEYTDIPSESNGYIS---PPANWPQTGDVELKNLSLRYSPHSSKALDNVSFKVKAGTKVGIVGRTGAGKSSIIAAIYRLSDWENGTITIDNKDIKHIPLERLRNSISCIPQDPTLFDGTVRSNLDPFDRYSD 1388          
BLAST of CF836429 vs. ExPASy Swiss-Prot
Match: MRP5_MOUSE (Multidrug resistance-associated protein 5 OS=Mus musculus GN=Abcc5 PE=1 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 7.590e-38
Identity = 96/263 (36.50%), Postives = 139/263 (52.85%), Query Frame = -3
Query:    3 RELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFCLATLFMILLPSSIIKPEXXXXXXXXXXXXXXXLFWAIYMSCFVENRMVSVERIKQFTEIPS-EAAWKMEDRLPPPNWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEE 788
            REL RLD+IT++P + H + SI G+ TI A+ K+  F       ++ N    F    +  WL  RL+++ S     +T  MI+   +                      + + ++   E R  SVERI  + +  S EA  +++++ PP +WP  G V   + ++RYR N PLVLK ++ +I   EKIG+VGRTGSGKS+L    FRLVE S                  LRS+  IIPQEPVLF GTVRSN+DP  QY++++
Sbjct: 1036 RELKRLDNITQSPFLSHITSSIQGLATIHAYNKRQEFLHRYQELLDDNQAPFFLFTCAMRWLPVRLDII-SIALITSTGLMIVSGMARSLSAYAGLAISYAVQLIGLFQFTVRLASETEARFTSVERINHYIKTLSLEAPARIKNKAPPHDWPQEGEVTFENAEMRYRENLPLVLKKVSFTIKPKEKIGIVGRTGSGKSSLGMALFRLVELSGGCIKIDGIRISDIGLADLRSKLAIIPQEPVLFSGTVRSNLDPFNQYTEDQ 1297          
BLAST of CF836429 vs. ExPASy Swiss-Prot
Match: AB12C_ARATH (ABC transporter C family member 12 OS=Arabidopsis thaliana GN=ABCC12 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 7.590e-38
Identity = 90/265 (33.96%), Postives = 133/265 (50.19%), Query Frame = -3
Query:    9 SRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFCLATLFMILLPSSIIKP----EXXXXXXXXXXXXXXXLFWAIYMSCFVENRMVSVERIKQFTEIPSEAAWKMEDRLPPPNWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSD 791
            SRE+ RLDS+T++P+   F E+++G+ +IRA+       + N   ++ N+R    N  SN WL  RLE LG     L   F +L   +                        L   +  +   EN + SVER+  + ++PSEA   +E+  P   WP+ G++   D+ +RYR   P VL G+T  +   EK+GVVGRTG+GKS+++   FR+VE                    +R    IIPQ PVLF GTVR NIDP  +++D
Sbjct: 1074 SREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGVMIWLTATFAVLQNGNTNNQAGFASTMGLLLSYTLNITSLLSGVLRQASRAENSLNSVERVGNYIDLPSEATDIIENNRPVCGWPSGGSIKFEDVHLRYRPGLPPVLHGLTFFVSPSEKVGVVGRTGAGKSSMLNALFRIVEVEKGRIMIDDCDVAKFGLTDVRRVLSIIPQSPVLFSGTVRFNIDPFSEHND 1338          
The following BLAST results are available for this feature:
BLAST of CF836429 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 114
Match NameE-valueIdentityDescription
ABCCC_DICDI1.478e-4136.88ABC transporter C family member 12 OS=Dictyosteliu... [more]
ABCC3_DICDI1.478e-4137.64ABC transporter C family member 3 OS=Dictyostelium... [more]
ABCCA_DICDI4.300e-4136.88ABC transporter C family member 10 OS=Dictyosteliu... [more]
AB1C_ARATH2.134e-4034.08ABC transporter C family member 1 OS=Arabidopsis t... [more]
MRP5_HUMAN2.787e-4038.02Multidrug resistance-associated protein 5 OS=Homo ... [more]
YH85_SCHPO4.754e-4036.36Uncharacterized ABC transporter ATP-binding protei... [more]
MRP5_RAT1.383e-3937.64Multidrug resistance-associated protein 5 OS=Rattu... [more]
NFT1_YEAST7.590e-3833.72ABC transporter NFT1 OS=Saccharomyces cerevisiae G... [more]
MRP5_MOUSE7.590e-3836.50Multidrug resistance-associated protein 5 OS=Mus m... [more]
AB12C_ARATH7.590e-3833.96ABC transporter C family member 12 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02P06_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02P06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836429 ID=CF836429; Name=CF836429; organism=Citrus sinensis; type=EST; length=793bp
ATTTCTTCATCTGAATACTGACCAATTGGATCAATGTTGCTTCTCACAGT
TCCTTCAAAAAGGACAGGTTCTTGAGGAATGATCCCAAAGCGAGACCTTA
GGTCATGAAGCCCCAACAATGAAATGTCGATTCCATCAATAATGATTCTC
CCTCCTGAAGGCTCCACCAGCCTAAAGAAAACTTGAATTAAAGTTGACTT
CCCACTTCCTGTACGCCCAACTACACCAATCTTCTCTCCCCCGTGAATGC
TGAGTGTAATACCTTTGAGAACCAGAGGAGTGTTGGAGCGATATCTGACC
TGCAAGTCTATGAGGTCCACATTGCCATGAGCAGGCCAATTTGGAGGTGG
AAGACGATCTTCCATCTTCCATGCTGCTTCTGAAGGAATTTCTGTAAACT
GCTTTATCCTTTCAACAGAGACCATCCGGTTTTCCACAAAGCAACTCATG
TATATGGCCCAGAATAGCACACCATTGAGGGACAACCCATATGAGAGTGA
CAAACCAACATTCTCTGGTTTTATGATACTGCTGGGTAACAGGATCATAA
ACAAAGTGGCGAGGCAGAAAGTAAAACTCCCAAGTAGCTCCAGACGGAAA
CCCAACCACTCATTGGACCCATTGTTGTGGAAATCCATGCGCAAATTGCC
ATTAACTCTATTAACATTTTCCTGATAAAATGTAGTTTGCTTTCCAAAAG
CACGGATTGTCATAACACCAGATATGCTTTCTGAAAAATGATGAATGACA
GGTGCTTTGGTGATTGAGTCAAGGCGTGTTAATTCTCTTGATG
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