CF836429

Overview
NameCF836429
Unique NameCF836429
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length793
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836429 vs. ExPASy Swiss-Prot
Match: MRP7_HUMAN (Multidrug resistance-associated protein 7 OS=Homo sapiens GN=ABCC10 PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.026e-34
Identity = 89/263 (33.84%), Postives = 136/263 (51.71%), Query Frame = -3
Query:    9 SRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTF-CLATLFMILLPSSIIKPEXXXXXXXXXXXXXXXLFWAIYMSCFVENRMVSVERIKQFT-EIPSEAAWKMEDRLPPPNWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSD 791
            SREL RL S+T +P+  H +++++G+  +RA G    F +EN+  +  N R  F  + + +WL  RL+L+G+     +A + ++     +  P                L   +      E  +VSVER++++T ++P E   + +       W   G V+  D+ + YR   P  L G+T  +  GEK+G+VGRTGSGKS+L+ V FRL+EPS                  LRS+  IIPQEP LF GTVR N+DP G + D
Sbjct: 1089 SRELRRLGSLTLSPLYSHLADTLAGLSVLRATGATYRFEEENLRLLELNQRCQFATSATMQWLDIRLQLMGAAVVSAIAGIALVQHQQGLANPGLVGLSLSYALSLTGLLSGLVSSFTQTEAMLVSVERLEEYTCDLPQEP--QGQPLQLGTGWLTQGGVEFQDVVLAYRPGLPNALDGVTFCVQPGEKLGIVGRTGSGKSSLLLVLFRLLEPSSGRVLLDGVDTSQLELAQLRSQLAIIPQEPFLFSGTVRENLDPQGLHKD 1349          
BLAST of CF836429 vs. ExPASy Swiss-Prot
Match: ABCCD_DICDI (ABC transporter C family member 13 OS=Dictyostelium discoideum GN=abcC13 PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.935e-33
Identity = 85/272 (31.25%), Postives = 139/272 (51.10%), Query Frame = -3
Query:    3 SRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFCLATLFMILLPSSIIKPEXXXXXXXXXXXXXXXLFWAIYMSCFVENRMVSVERIKQFTEIPSEA-------AWKMEDRLPPPN--WPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEE 791
            SR+L R +SIT++P+     E+ +G++TIR++ +Q  F     + +N NLR+ +++   + W+G RLE + +    L   F +   ++                    L WA+     +E +M SVERI+ +   P E          + E+ +   N  WP+ G ++  D+++RYR  +   LK ++  I+  + IG+VGRTG+GKST+    FR+VE S                  LRS  GI+PQ+P +F GT+R NIDP  +Y+D E
Sbjct:  941 SRDLKRYESITRSPIFSLLQETFNGLVTIRSYQQQNRFISMMQDHININLRLFYYSFSIHRWIGVRLEFISALVVFLTAFFSLFNSNA----GFSVLSVTTAIGMCTYLNWAVRQFVELEVKMNSVERIESYINTPKEGNRFTIDNEEEGEENMINLNEKWPSKGEIEFRDVEIRYRPTSEPSLKNLSFKINSNDHIGIVGRTGAGKSTVGISLFRMVECSKGSILIDGIDISKIGLHDLRSSLGIVPQDPFIFSGTIRLNIDPFNKYTDSE 1208          
BLAST of CF836429 vs. ExPASy Swiss-Prot
Match: ABCC6_DICDI (ABC transporter C family member 6 OS=Dictyostelium discoideum GN=abcC6 PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 7.352e-33
Identity = 88/278 (31.65%), Postives = 138/278 (49.64%), Query Frame = -3
Query:    3 SRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLG----SFTFCLATLFMILLPSSIIKPEXXXXXXXXXXXXXXXLFWAIYMSCFVENRMVSVERIKQFTEIPSEAAWKMEDRLPPP-----------NWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEE 791
            +REL R +SIT +P+     E  +G++TIR + +++ F +E  + +N NL   F++   + W+  RLE++G     FT  +ATLF       I                   L W I     +E +M S +RI+ + EIP E    +                  NWP  G ++  +++++YR N+   LK ++  +   EKIG+VGRTG+GK+T+    FR+VE S                  LRS  GI+PQ+P +F GT+RSNIDP  +++D E
Sbjct:  936 ARELNRWESITVSPIFSLLQECYNGLLTIRTYKQESRFIKEMFDNININLGCFFYSFAVHRWVSMRLEVMGWIMVFFTSLIATLF-------ISNNGLAALSVTTALSLNGYLSWGIRRIVDLEVKMNSFQRIQSYIEIPKEGNKLVSTNSNEVDNHTIKDADLVNWPNKGIIEFKNVEIKYRPNSEPNLKDLSFKVQSSEKIGIVGRTGAGKTTIASSLFRMVECSKGLILIDGIDISKVQLQKLRSSIGIVPQDPFIFTGTIRSNIDPFNEFTDFE 1206          
BLAST of CF836429 vs. ExPASy Swiss-Prot
Match: MRP7_MOUSE (Multidrug resistance-associated protein 7 OS=Mus musculus GN=Abcc10 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.638e-32
Identity = 87/267 (32.58%), Postives = 135/267 (50.56%), Query Frame = -3
Query:    9 RELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTF-CLATLFMILLPSSIIKPEXXXXXXXXXXXXXXXLFWAIYMSCFVENRMVSVERIKQFT-EIPSEAAWKMEDRLPPPN-----WPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSD 788
            REL RL S+T +P+  H +++++G+  +RA G    F +EN   +  N R  F +  + +WL  RL+L+G+     +A + ++     +  P                L   +      E  MVSVER+++++ ++P E        L  P+     W   G+V+  D+ + YR   P  L G+T  +  GEK+G+VGRTGSGKS+L  V FRL+EP+                  LRS+  +IPQEP LF GT+R N+DP G + D
Sbjct: 1095 RELRRLGSLTWSPLYSHLADTLAGLPVLRAAGATYRFEEENQRLLELNQRCQFASYATMQWLDIRLQLMGAAVVSAIAGIALVQHQQGLANPGLVGLVLSYALSLTGLLSGLVSSFTQTEAMMVSVERLEEYSCDVPQEPH---SQPLQSPHQQRISWLTQGSVEFQDVVLVYRPGLPNALDGVTFRVEPGEKLGIVGRTGSGKSSLFLVLFRLLEPNAGRVLLDNVDTSQLELAELRSQLAVIPQEPFLFSGTIRENLDPQGLHED 1358          
BLAST of CF836429 vs. ExPASy Swiss-Prot
Match: ABCC2_DICDI (ABC transporter C family member 2 OS=Dictyostelium discoideum GN=abcC2 PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.139e-32
Identity = 87/276 (31.52%), Postives = 137/276 (49.64%), Query Frame = -3
Query:    3 SRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFCLATLFMILLPSSIIKPEXXXXXXXXXXXXXXXLF--WAIYMSCFVENRMVSVERIKQFTEIPSEA---AWKMEDRLPPPN--------WPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEE 791
            S EL R++SIT++PV    +E+ +G++TIR + +Q  F +   N +N NLR+ F++   + W+G RLE      F  A +      SS+                    +  W I     +E +M SVER++ + + P E      + ED +            WP+ G V+  +++++YR      LK I+  I+  + IGVVGRTG+GKST+    FR+VE S                  LR   GI+PQ+P +F G++R NIDP  +Y+D+E
Sbjct:  973 SVELKRMESITRSPVFSLLAEAYNGLVTIRCYQQQKRFIEMMQNHININLRLFFYSFSVHRWVGIRLE------FITALIVFFTAFSSLFSSNTGFSVLAVTTALGICSYLNWTIRQMTELEVKMNSVERVESYIKTPREGIRHTSEFEDEIDIDGEIEMDFTKWPSRGEVEFKNVEIKYRPTADPSLKNISFKINAKDHIGVVGRTGAGKSTVGISLFRMVECSKGSIFIDGVDISKVGLHELRDALGIVPQDPFIFSGSIRMNIDPFNKYTDDE 1242          
BLAST of CF836429 vs. ExPASy Swiss-Prot
Match: ABCCE_DICDI (ABC transporter C family member 14 OS=Dictyostelium discoideum GN=abcC14 PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.794e-32
Identity = 85/277 (30.69%), Postives = 135/277 (48.74%), Query Frame = -3
Query:    3 SRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFCLATLFMILLPSSIIKPEXXXXXXXXXXXXXXXLFWAIYMSCFVENRMVSVERIKQFTEIPSEA--------------AWKMEDRLPPPNWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEE 791
            +REL R +SIT +PV     E  +G++TIR + +++ F +E  + +N NL   F++   + W+  RLE++G       +L   L  S+                    L W +     +E +M S +RI+ + EIP E                 K        NWP  G ++  +++++YR N+   LK ++  +   EKIG+VGRTG+GK+T+    FR+VE S                  LRS  GI+PQ+P +F GT+RSNIDP  +++D E
Sbjct:  903 ARELNRWESITLSPVFSLLQECYNGLLTIRTYKQESRFIKEMFDNININLGCIFYSFAVHRWISMRLEVMGCIMVFFTSLAAALFTSN---NGLAALSVTTALSLNGYLSWGVRRIVELEVKMNSFQRIQSYIEIPKEGNKLISTGTNQVDSDGLKTISNGDLVNWPNKGIIEFKNVEIKYRPNSEPNLKDLSFKVQSSEKIGIVGRTGAGKTTIASSLFRMVECSKGLILIDGIDISKVQLQKLRSSIGIVPQDPFIFTGTIRSNIDPFNEFTDFE 1176          
BLAST of CF836429 vs. ExPASy Swiss-Prot
Match: ABCCB_HUMAN (ATP-binding cassette transporter sub-family C member 11 OS=Homo sapiens GN=ABCC11 PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 6.224e-32
Identity = 87/262 (33.21%), Postives = 129/262 (49.24%), Query Frame = -3
Query:    3 RLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQE--NVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFCLATLFMILLPSSIIKPEXXXXXXXXXXXXXXXLFWAIY-MSCFVENRMVSVERIKQFTEI-PSEAAWKMEDRLPPPNWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEE 776
            RL++ +++P+  H   S+ G+ +I  +GK   F  +   +     N  + F +  S  W+  RLE++ +       LF+    SS   P                 F A   +    E +  +VERI Q+ ++  SEA   ME    P  WP HG +   D  ++YR NTP VL GI L+I G E +G+VGRTGSGKS+L    FRLVEP                   LRS+  +IPQ+PVL  GT+R N+DP  +++D++
Sbjct:  989 RLENYSRSPLFSHILNSLQGLSSIHVYGKTEDFISQFKRLTDAQNNYLLLFLS--STRWMALRLEIMTNLVTLAVALFVAFGISST--PYSFKVMAVNIVLQLASSFQATARIGLETEAQFTAVERILQYMKMCVSEAPLHMEGTSCPQGWPQHGEIIFQDYHMKYRDNTPTVLHGINLTIRGHEVVGIVGRTGSGKSSLGMALFRLVEPMAGRILIDGVDICSIGLEDLRSKLSVIPQDPVLLSGTIRFNLDPFDRHTDQQ 1246          
BLAST of CF836429 vs. ExPASy Swiss-Prot
Match: ABCC1_DICDI (ABC transporter C family member 1 OS=Dictyostelium discoideum GN=abcC1 PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 8.987e-31
Identity = 86/288 (29.86%), Postives = 136/288 (47.22%), Query Frame = -3
Query:    3 SRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFCLATLFMILLPSSIIKPEXXXXXXXXXXXXXXXLFWAIYMSCFVENRMVSVERIKQFTEIPSEAAWKM--------------EDRLPPPN-----------WPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEE 791
            SREL RL++I+++P+     ES +G++TIR++ +Q  F     +R+N N R+ ++    + W+  RLE + S    LA  F +   ++                    L W +     +E +M SVERI+ +  IP E   K+              E+     N           W   G ++  +++++Y  +    LK  TL I+  + IG+VGRTG+GKST+    FR+VE S                  LRS  GI+PQ+P +F GT+R NIDP  +Y+D E
Sbjct:  938 SRELKRLEAISRSPIFSLLQESFNGLVTIRSYKQQNKFISMMQDRINTNHRLSYYGFSVHRWVAVRLEFISSIVVFLAAFFSLFNSNAGFS----VLSVTTALGMCSYLNWTVRQMVELEVKMNSVERIESYLNIPKEGNSKINFFRNEQQEEEEEEEEEFDFDNDDYDGFKLSKKWLTKGEIEFRNVEIKYGHSGESSLKNFTLKINQKDHIGIVGRTGAGKSTIGNGLFRMVECSKGSILIDGVDISKIGLHELRSSLGIVPQDPFIFSGTIRLNIDPFNKYTDSE 1221          
BLAST of CF836429 vs. ExPASy Swiss-Prot
Match: AB13C_ARATH (ABC transporter C family member 13 OS=Arabidopsis thaliana GN=ABCC13 PE=2 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 1.533e-30
Identity = 83/266 (31.20%), Postives = 125/266 (46.99%), Query Frame = -3
Query:    9 SRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFCLATLFMIL-----LPSSIIKPEXXXXXXXXXXXXXXXLFWAIYMSCFVENRMVSVERIKQFTEIPSEAAWKMEDRLPPPNWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSD 791
            SREL RLDS++++P+   F+E++ G  TIRAF  +  F    +  +    R  +    ++ WL  RL+LLGS       +  +L      P S   P                L   +      E  MVSVER+ Q+ ++P E     +       WP HG V+  ++ +RY S  P  L  I+ +I GG  +GV+GRTG+GKS+++   FRL                      LRS   ++PQ P LF+G++R N+DP+G   D
Sbjct:  798 SRELRRLDSVSRSPIYASFTETLDGSSTIRAFKSEEHFVGRFIEHLTLYQRTSYSEIIASLWLSLRLQLLGSMIVLFVAVMAVLGSGGNFPISFGTPGLVGLALSYAAPLVSLLGSLLTSFTETEKEMVSVERVLQYMDVPQEEVSGPQSL--SDKWPVHGLVEFHNVTMRYISTLPPALTQISFTIQGGMHVGVIGRTGAGKSSILNALFRLTPVCSGEILVDGKNISHLPIRELRSCLAVVPQSPFLFQGSLRDNLDPLGLSED 1061          
BLAST of CF836429 vs. ExPASy Swiss-Prot
Match: ABCC8_HUMAN (ATP-binding cassette transporter sub-family C member 8 OS=Homo sapiens GN=ABCC8 PE=1 SV=5)

HSP 1 Score: 129.798 bits (325), Expect = 1.695e-29
Identity = 84/266 (31.58%), Postives = 131/266 (49.25%), Query Frame = -3
Query:    9 SRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFCLATLFMILLPSSIIKPEXXXXXXXXXXXXXXXLF----WAIYMSCFVENRMVSVERIKQFTEIPSEA-AWKMEDRLPPPNWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSD 791
            SR+L +LD  T+ P++ HF+E++ G+ TIRAF  +  F Q+ +   + N         +N WL  R+E +G+   C+  +  +   S+ +  E               +     W +     +E ++ +V+RI    +  +E+    +   L P NWP  G + + +L VRY S+   VLK +   I  G+KIG+ GRTGSGKS+    FFR+V+                    LRSR  II Q+PVLF GT+R N+DP  + SD
Sbjct: 1185 SRDLQQLDDTTQLPLLSHFAETVEGLTTIRAFRYEARFQQKLLEYTDSNNIASLFLTAANRWLEVRMEYIGA---CVVLIAAVTSISNSLHRELSAGLVGLGLTYALMVSNYLNWMVRNLADMELQLGAVKRIHGLLKTEAESYEGLLAPSLIPKNWPDQGKIQIQNLSVRYDSSLKPVLKHVNALISPGQKIGICGRTGSGKSSFSLAFFRMVDTFEGHIIIDGIDIAKLPLHTLRSRLSIILQDPVLFSGTIRFNLDPERKCSD 1447          
The following BLAST results are available for this feature:
BLAST of CF836429 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 114
Match NameE-valueIdentityDescription
MRP7_HUMAN1.026e-3433.84Multidrug resistance-associated protein 7 OS=Homo ... [more]
ABCCD_DICDI1.935e-3331.25ABC transporter C family member 13 OS=Dictyosteliu... [more]
ABCC6_DICDI7.352e-3331.65ABC transporter C family member 6 OS=Dictyostelium... [more]
MRP7_MOUSE1.638e-3232.58Multidrug resistance-associated protein 7 OS=Mus m... [more]
ABCC2_DICDI2.139e-3231.52ABC transporter C family member 2 OS=Dictyostelium... [more]
ABCCE_DICDI2.794e-3230.69ABC transporter C family member 14 OS=Dictyosteliu... [more]
ABCCB_HUMAN6.224e-3233.21ATP-binding cassette transporter sub-family C memb... [more]
ABCC1_DICDI8.987e-3129.86ABC transporter C family member 1 OS=Dictyostelium... [more]
AB13C_ARATH1.533e-3031.20ABC transporter C family member 13 OS=Arabidopsis ... [more]
ABCC8_HUMAN1.695e-2931.58ATP-binding cassette transporter sub-family C memb... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02P06_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02P06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836429 ID=CF836429; Name=CF836429; organism=Citrus sinensis; type=EST; length=793bp
ATTTCTTCATCTGAATACTGACCAATTGGATCAATGTTGCTTCTCACAGT
TCCTTCAAAAAGGACAGGTTCTTGAGGAATGATCCCAAAGCGAGACCTTA
GGTCATGAAGCCCCAACAATGAAATGTCGATTCCATCAATAATGATTCTC
CCTCCTGAAGGCTCCACCAGCCTAAAGAAAACTTGAATTAAAGTTGACTT
CCCACTTCCTGTACGCCCAACTACACCAATCTTCTCTCCCCCGTGAATGC
TGAGTGTAATACCTTTGAGAACCAGAGGAGTGTTGGAGCGATATCTGACC
TGCAAGTCTATGAGGTCCACATTGCCATGAGCAGGCCAATTTGGAGGTGG
AAGACGATCTTCCATCTTCCATGCTGCTTCTGAAGGAATTTCTGTAAACT
GCTTTATCCTTTCAACAGAGACCATCCGGTTTTCCACAAAGCAACTCATG
TATATGGCCCAGAATAGCACACCATTGAGGGACAACCCATATGAGAGTGA
CAAACCAACATTCTCTGGTTTTATGATACTGCTGGGTAACAGGATCATAA
ACAAAGTGGCGAGGCAGAAAGTAAAACTCCCAAGTAGCTCCAGACGGAAA
CCCAACCACTCATTGGACCCATTGTTGTGGAAATCCATGCGCAAATTGCC
ATTAACTCTATTAACATTTTCCTGATAAAATGTAGTTTGCTTTCCAAAAG
CACGGATTGTCATAACACCAGATATGCTTTCTGAAAAATGATGAATGACA
GGTGCTTTGGTGATTGAGTCAAGGCGTGTTAATTCTCTTGATG
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