CF836429

Overview
NameCF836429
Unique NameCF836429
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length793
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11050 contig Csv1_Contig11050:216..1008. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836429 vs. ExPASy Swiss-Prot
Match: YOR1_YEAST (Oligomycin resistance ATP-dependent permease YOR1 OS=Saccharomyces cerevisiae GN=YOR1 PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.214e-29
Identity = 78/263 (29.66%), Postives = 132/263 (50.19%), Query Frame = -3
Query:    3 RELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFCLATLFMILLPSSIIKPEXXXXXXXXXXXXXXXLFWAIYMSCFVENRMVSVERIKQF-TEIPSEAAWKMEDRLPPPNWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEE 788
            RE+ RL+++ ++ V ++ +E + G+ TI+A+  Q  F  ++   +N      +       W+G  L+++ +  F L    + +  +  I                  L   +      EN M S ER+  + TE+P EA+++  +  PP +WP+ G +   ++   YR   P+VLK + L+I  GEKIG+ GRTG+GKST++   +RL E +                  LR +  IIPQ+PVLF GT+R N+DP  + +D+E
Sbjct: 1057 REIKRLEAVQRSFVYNNLNEVLGGMDTIKAYRSQERFLAKSDFLINKMNEAGYLVVVLQRWVGIFLDMV-AIAFALIITLLCVTRAFPISAASVGVLLTYVLQLPGLLNTILRAMTQTENDMNSAERLVTYATELPLEASYRKPEMTPPESWPSMGEIIFENVDFAYRPGLPIVLKNLNLNIKSGEKIGICGRTGAGKSTIMSALYRLNELTAGKILIDNVDISQLGLFDLRRKLAIIPQDPVLFRGTIRKNLDPFNERTDDE 1318          
BLAST of CF836429 vs. ExPASy Swiss-Prot
Match: MRP9_MOUSE (Multidrug resistance-associated protein 9 OS=Mus musculus GN=Abcc12 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.891e-29
Identity = 83/264 (31.44%), Postives = 134/264 (50.76%), Query Frame = -3
Query:    6 RELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSF-TFCLATLFMILLPSSIIKPEXXXXXXXXXXXXXXXLFWAIYMSCFVENRMVSVERIKQF--TEIPSEAAWKMEDRLPPPNWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDE 788
            +EL ++++I+++P   H + SI G+  I A+ K+     +     + N     + N +  W   R+++L +  TF +A L  + L  S I                  L   +      + +  S E ++++  T +P E     +    P +WP+ G +   D ++RYR NTPLVL G+ L+I  G+ +G+VGRTGSGKS+L    FRLVEP+                  LR++  +IPQ+PVLF GTVR N+DP+G ++DE
Sbjct:  971 QELKQVENISRSPWFSHITSSIQGLGVIHAYDKKDDCISKFKTLNDENSSHLLYFNCALRWFALRMDILMNIVTFVVALL--VTLSFSSISASSKGLSLSYIIQLSGLLQVCVRTGTETQAKFTSAELLREYILTCVP-EHTHPFKVGTCPKDWPSRGEITFKDYRMRYRDNTPLVLDGLNLNIQSGQTVGIVGRTGSGKSSLGMALFRLVEPASGTIIIDEVDICTVGLEDLRTKLTMIPQDPVLFVGTVRYNLDPLGSHTDE 1231          
BLAST of CF836429 vs. ExPASy Swiss-Prot
Match: ABCC9_RAT (ATP-binding cassette transporter sub-family C member 9 OS=Rattus norvegicus GN=Abcc9 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.776e-29
Identity = 84/263 (31.94%), Postives = 127/263 (48.29%), Query Frame = -3
Query:    6 SRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFCLATLFMILLPSSIIKPEXXXXXXXXXXXXXXXLFWAIYMSCFVENRMVSVERIKQFTEIPSEA-AWKMEDRLPPPNWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDE 791
            S++L  LD  T+ P++ HFSE+  G+ TIRAF  +T F Q  +   + N       + +N WL  R + LG+   C+     I   S                     L W +     +E +M +V+++  F  + SE     M+    P +WP  G + + DL VRY +N   VLK +   I  G+K+G+ GRTGSGKS+L   FFR+V+                    LRSR  II Q+P+LF G++R N+DP  + +D+
Sbjct: 1153 SKDLQELDDSTQLPLLCHFSETAEGLTTIRAFRHETRFKQRMLELTDTNNIAYLFLSAANRWLEVRTDYLGA---CIVLTASIASISGSSNSGLVGLGLLYALTITNYLNWVVRNLADLEVQMGAVKKVNSFLTMESENYEGTMDPSQVPEHWPQEGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPECKCTDD 1412          
BLAST of CF836429 vs. ExPASy Swiss-Prot
Match: ABCC9_MOUSE (ATP-binding cassette transporter sub-family C member 9 OS=Mus musculus GN=Abcc9 PE=1 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 3.776e-29
Identity = 84/263 (31.94%), Postives = 127/263 (48.29%), Query Frame = -3
Query:    6 SRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFCLATLFMILLPSSIIKPEXXXXXXXXXXXXXXXLFWAIYMSCFVENRMVSVERIKQFTEIPSEA-AWKMEDRLPPPNWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDE 791
            S++L  LD  T+ P++ HFSE+  G+ TIRAF  +T F Q  +   + N       + +N WL  R + LG+   C+     I   S                     L W +     +E +M +V+++  F  + SE     M+    P +WP  G + + DL VRY +N   VLK +   I  G+K+G+ GRTGSGKS+L   FFR+V+                    LRSR  II Q+P+LF G++R N+DP  + +D+
Sbjct: 1154 SKDLQELDDSTQLPLLCHFSETAEGLTTIRAFRHETRFKQRMLELTDTNNIAYLFLSAANRWLEVRTDYLGA---CIVLTASIASISGSSNSGLVGLGLLYALTITNYLNWVVRNLADLEVQMGAVKKVNSFLTMESENYEGTMDPSQVPEHWPQEGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPECKCTDD 1413          
BLAST of CF836429 vs. ExPASy Swiss-Prot
Match: ABCC9_HUMAN (ATP-binding cassette transporter sub-family C member 9 OS=Homo sapiens GN=ABCC9 PE=1 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 3.776e-29
Identity = 84/263 (31.94%), Postives = 127/263 (48.29%), Query Frame = -3
Query:    6 SRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFCLATLFMILLPSSIIKPEXXXXXXXXXXXXXXXLFWAIYMSCFVENRMVSVERIKQFTEIPSEA-AWKMEDRLPPPNWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDE 791
            S++L  LD  T+ P++ HFSE+  G+ TIRAF  +T F Q  +   + N       + +N WL  R + LG+   C+     I   S                     L W +     +E +M +V+++  F  + SE     M+    P +WP  G + + DL VRY +N   VLK +   I  G+K+G+ GRTGSGKS+L   FFR+V+                    LRSR  II Q+P+LF G++R N+DP  + +D+
Sbjct: 1157 SKDLQELDDSTQLPLLCHFSETAEGLTTIRAFRHETRFKQRMLELTDTNNIAYLFLSAANRWLEVRTDYLGA---CIVLTASIASISGSSNSGLVGLGLLYALTITNYLNWVVRNLADLEVQMGAVKKVNSFLTMESENYEGTMDPSQVPEHWPQEGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPECKCTDD 1416          
BLAST of CF836429 vs. ExPASy Swiss-Prot
Match: ABCC8_RAT (ATP-binding cassette transporter sub-family C member 8 OS=Rattus norvegicus GN=Abcc8 PE=1 SV=4)

HSP 1 Score: 128.642 bits (322), Expect = 3.776e-29
Identity = 85/266 (31.95%), Postives = 130/266 (48.87%), Query Frame = -3
Query:    9 SRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFCLATLFMILLPSSIIKPEXXXXXXXXXXXXXXXLF----WAIYMSCFVENRMVSVERIKQFTEIPSEA-AWKMEDRLPPPNWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSD 791
            SR+L +LD  T+ P++ HF+E++ G+ TIRAF  +  F Q+ +   + N         +N WL  R+E +G+    +A    I   S+ +  E               +     W +     +E ++ +V+RI    +  +E+    +   L P NWP  G + + +L VRY S+   VLK +   I  G+KIG+ GRTGSGKS+    FFR+V+                    LRSR  II Q+PVLF GT+R N+DP  + SD
Sbjct: 1186 SRDLQQLDDTTQLPLLSHFAETVEGLTTIRAFRYEARFQQKLLEYTDSNNIASLFLTAANRWLEVRMEYIGACVVLIAAATSI---SNSLHRELSAGLVGLGLTYALMVSNYLNWMVRNLADMEIQLGAVKRIHTLLKTEAESYEGLLAPSLIPKNWPDQGKIQIQNLSVRYDSSLKPVLKHVNALISPGQKIGICGRTGSGKSSFSLAFFRMVDMFEGRIIIDGIDIAKLPLHTLRSRLSIILQDPVLFSGTIRFNLDPEKKCSD 1448          
BLAST of CF836429 vs. ExPASy Swiss-Prot
Match: MRP9_HUMAN (Multidrug resistance-associated protein 9 OS=Homo sapiens GN=ABCC12 PE=1 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 6.440e-29
Identity = 83/264 (31.44%), Postives = 133/264 (50.38%), Query Frame = -3
Query:    6 RELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLE-LLGSFTFCLATLFMILLPSSIIKPEXXXXXXXXXXXXXXXLFWAIYMSCFVENRMVSVERIKQF--TEIPSEAAWKMEDRLPPPNWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDE 788
            +EL ++++++++P   H + S+ G+  I A+GK+ +    ++   N  LR          W   R++ L+   TF +A L  + L  S I                  L   +      + +  SVE ++++  T +P E    ++    P +WP+ G +   D Q+RYR NTPLVL  + L+I  G+ +G+VGRTGSGKS+L    FRLVEP+                  LR++  +IPQ+PVLF GTVR N+DP   ++DE
Sbjct:  974 QELKKVENVSRSPWFTHITSSMQGLGIIHAYGKKESCITYHLLYFNCALR----------WFALRMDVLMNILTFTVALL--VTLSFSSISTSSKGLSLSYIIQLSGLLQVCVRTGTETQAKFTSVELLREYISTCVP-ECTHPLKVGTCPKDWPSRGEITFRDYQMRYRDNTPLVLDSLNLNIQSGQTVGIVGRTGSGKSSLGMALFRLVEPASGTIFIDEVDICILSLEDLRTKLTVIPQDPVLFVGTVRYNLDPFESHTDE 1224          
BLAST of CF836429 vs. ExPASy Swiss-Prot
Match: MRP9_RAT (Multidrug resistance-associated protein 9 OS=Rattus norvegicus GN=Abcc12 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.099e-28
Identity = 82/264 (31.06%), Postives = 134/264 (50.76%), Query Frame = -3
Query:    6 RELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSF-TFCLATLFMILLPSSIIKPEXXXXXXXXXXXXXXXLFWAIYMSCFVENRMVSVERIKQF--TEIPSEAAWKMEDRLPPPNWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDE 788
            +EL ++++I+++P   H + S+ G+  I A+ K+     +     + N     + N +  W   R+++L +  TF +A L  + L  S I                  L   +      + +  S E ++++  T +P E     +    P +WP+ G +   D ++RYR NTPLVL G+ L+I  G+ +G+VGRTGSGKS+L    FRLVEP+                  LR++  +IPQ+PVLF GTVR N+DP+G ++DE
Sbjct:  971 QELKQVENISRSPWFSHITSSMQGLGVIHAYDKKDDCISKFKALNDENSSHLLYFNCALRWFALRMDILMNIVTFVVALL--VTLSFSSISASSKGLSLSYIIQLSGLLQVCVRTGTETQAKFTSAELMREYISTCVP-EHTQSFKVGTCPKDWPSRGEITFKDYRMRYRDNTPLVLDGLNLNIQSGQTVGIVGRTGSGKSSLGMALFRLVEPASGTIFIDEVDICTVGLEELRTKLTMIPQDPVLFVGTVRYNLDPLGSHTDE 1231          
BLAST of CF836429 vs. ExPASy Swiss-Prot
Match: ABCC9_RABIT (ATP-binding cassette transporter sub-family C member 9 OS=Oryctolagus cuniculus GN=ABCC9 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.435e-28
Identity = 83/263 (31.56%), Postives = 126/263 (47.91%), Query Frame = -3
Query:    6 SRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFCLATLFMILLPSSIIKPEXXXXXXXXXXXXXXXLFWAIYMSCFVENRMVSVERIKQFTEIPSEA-AWKMEDRLPPPNWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDE 791
            S++L  LD  T+ P++ HFSE+  G+ TIRAF  +  F Q  +   + N       + +N WL  R + LG+   C+     I   S                     L W +     +E +M +V+++  F  + SE     M+    P +WP  G + + DL VRY +N   VLK +   I  G+K+G+ GRTGSGKS+L   FFR+V+                    LRSR  II Q+P+LF G++R N+DP  + +D+
Sbjct: 1157 SKDLQELDDSTQLPLLCHFSETAEGLTTIRAFRHEARFKQRMLELTDTNNIAYLFLSAANRWLEVRTDYLGA---CIVLTASIASISGSSNSGLVGLGLLYALTITNYLNWVVRNLADLEVQMGAVKKVNSFLTMESENYEGTMDPSQVPEHWPQEGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPECKCTDD 1416          
BLAST of CF836429 vs. ExPASy Swiss-Prot
Match: L259_DROME (Probable multidrug resistance-associated protein lethal(2)03659 OS=Drosophila melanogaster GN=l(2)03659 PE=2 SV=3)

HSP 1 Score: 126.331 bits (316), Expect = 1.874e-28
Identity = 81/266 (30.45%), Postives = 128/266 (48.12%), Query Frame = -3
Query:    3 SRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFCLATLFMILLPSSIIKPEXXXXXXXXXXXXXXXLFWAIYMSCFVENRMVSVERIKQFTEIPSEAAWKM-EDRLPPPNWPAHGNVDLIDLQVRYRSNTPL--VLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEE 791
            SR+L R+++I ++PV  H + S++G+ TIRA   Q    +E  +  + +    F    +++  G+ +  +      + TL     P                      + W +  +  +EN M +VER+ ++  I  E   +  +D+ PP  WP  G +   +L +RY  N     VLK ++  I   EK+G+VGRTG+GKS+LI   FRL   +                  LR +  IIPQEPVLF GT+R N+DP  +YSDE+
Sbjct:  878 SRDLKRVEAINRSPVYSHLAASLNGLTTIRALDAQRVLEKEFDSYQDAHSSAFFMYISTSQAFGYCMNCICVIYISIITLSFFAFPPG--NGADVGLVITQAMGLIDMVQWGVRQTAELENTMTAVERVVEYESIEPEGMLEAPDDKKPPKTWPEQGEIIFKELNLRYTPNAKAENVLKSLSFVIQPREKVGIVGRTGAGKSSLINALFRL-SYTDGSVLIDTRDTRQMGLHDLRRQISIIPQEPVLFSGTMRYNLDPFDEYSDEK 1140          
The following BLAST results are available for this feature:
BLAST of CF836429 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 114
Match NameE-valueIdentityDescription
YOR1_YEAST2.214e-2929.66Oligomycin resistance ATP-dependent permease YOR1 ... [more]
MRP9_MOUSE2.891e-2931.44Multidrug resistance-associated protein 9 OS=Mus m... [more]
ABCC9_RAT3.776e-2931.94ATP-binding cassette transporter sub-family C memb... [more]
ABCC9_MOUSE3.776e-2931.94ATP-binding cassette transporter sub-family C memb... [more]
ABCC9_HUMAN3.776e-2931.94ATP-binding cassette transporter sub-family C memb... [more]
ABCC8_RAT3.776e-2931.95ATP-binding cassette transporter sub-family C memb... [more]
MRP9_HUMAN6.440e-2931.44Multidrug resistance-associated protein 9 OS=Homo ... [more]
MRP9_RAT1.099e-2831.06Multidrug resistance-associated protein 9 OS=Rattu... [more]
ABCC9_RABIT1.435e-2831.56ATP-binding cassette transporter sub-family C memb... [more]
L259_DROME1.874e-2830.45Probable multidrug resistance-associated protein l... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02P06_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02P06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836429 ID=CF836429; Name=CF836429; organism=Citrus sinensis; type=EST; length=793bp
ATTTCTTCATCTGAATACTGACCAATTGGATCAATGTTGCTTCTCACAGT
TCCTTCAAAAAGGACAGGTTCTTGAGGAATGATCCCAAAGCGAGACCTTA
GGTCATGAAGCCCCAACAATGAAATGTCGATTCCATCAATAATGATTCTC
CCTCCTGAAGGCTCCACCAGCCTAAAGAAAACTTGAATTAAAGTTGACTT
CCCACTTCCTGTACGCCCAACTACACCAATCTTCTCTCCCCCGTGAATGC
TGAGTGTAATACCTTTGAGAACCAGAGGAGTGTTGGAGCGATATCTGACC
TGCAAGTCTATGAGGTCCACATTGCCATGAGCAGGCCAATTTGGAGGTGG
AAGACGATCTTCCATCTTCCATGCTGCTTCTGAAGGAATTTCTGTAAACT
GCTTTATCCTTTCAACAGAGACCATCCGGTTTTCCACAAAGCAACTCATG
TATATGGCCCAGAATAGCACACCATTGAGGGACAACCCATATGAGAGTGA
CAAACCAACATTCTCTGGTTTTATGATACTGCTGGGTAACAGGATCATAA
ACAAAGTGGCGAGGCAGAAAGTAAAACTCCCAAGTAGCTCCAGACGGAAA
CCCAACCACTCATTGGACCCATTGTTGTGGAAATCCATGCGCAAATTGCC
ATTAACTCTATTAACATTTTCCTGATAAAATGTAGTTTGCTTTCCAAAAG
CACGGATTGTCATAACACCAGATATGCTTTCTGAAAAATGATGAATGACA
GGTGCTTTGGTGATTGAGTCAAGGCGTGTTAATTCTCTTGATG
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