CF836429
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF836429 vs. ExPASy Swiss-Prot
Match: CFTR_TRIVU (Cystic fibrosis transmembrane conductance regulator OS=Trichosurus vulpecula GN=CFTR PE=2 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 2.447e-28 Identity = 83/280 (29.64%), Postives = 129/280 (46.07%), Query Frame = -3 Query: 3 SRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFCLATLFMILLPSSIIKPEXXXXXXXXXXXXXXXLFWAIYMSCFVENRMVSVERIKQFTEIPSEAAWKME-----------------DRLPPPNWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEE 791 S++L +L+S + P+ H S+ G+ T+RAFG+Q F +N + F + W R+E++ FC+ T IL L WA+ S V++ M SV R+ +F ++PSE + + + NWP+ G + + DL +Y VL+ I+ SI G+++G++GRTGSGKSTL+ F RL+ + R FG+IPQ+ +F GT R N+DP GQ+SD E Sbjct: 1036 SQQLKQLESEARTPIFTHLVTSLKGLWTLRAFGRQPYFETLFHKALNLHTANWFLYMSTLRWFQMRIEIIFVTFFCIVTFISILTTGD--GEGRVGILLTLAMNIMSTLQWAVNSSIDVDSLMRSVSRVFKFIDMPSEEPLPPKPTKSKKNQLSQVLIIENEHVKKENWPSGGQMTVKDLTAKYIDGGNAVLENISFSISSGQRVGLLGRTGSGKSTLLAAFLRLLN-TQGDIQIDGVSWDSVPLQQWRKAFGVIPQKVFIFSGTFRKNLDPYGQWSDHE 1312
BLAST of CF836429 vs. ExPASy Swiss-Prot
Match: ABCC8_CRICR (ATP-binding cassette transporter sub-family C member 8 OS=Cricetus cricetus GN=ABCC8 PE=1 SV=3) HSP 1 Score: 125.946 bits (315), Expect = 2.447e-28 Identity = 84/266 (31.58%), Postives = 129/266 (48.50%), Query Frame = -3 Query: 9 SRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFCLATLFMILLPSSIIKPEXXXXXXXXXXXXXXXLF----WAIYMSCFVENRMVSVERIKQFTEIPSEA-AWKMEDRLPPPNWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSD 791 SR+L +LD T+ P++ HF+E++ G+ TIRAF + F Q+ + + N +N WL +E +G+ +A I S+ + E + W + +E ++ +V+RI + +E+ + L P NWP G + + +L VRY S+ VLK + I G+KIG+ GRTGSGKS+ FFR+V+ LRSR II Q+PVLF GT+R N+DP + SD Sbjct: 1186 SRDLQQLDDTTQLPLVSHFAETVEGLTTIRAFRYEARFQQKLLEYTDSNNIASLFLTAANRWLEVCMEYIGACVVLIAAATSI---SNSLHRELSAGLVGLGLTYALMVSNYLNWMVRNLADMEIQLGAVKRIHALLKTEAESYEGLLAPSLIPKNWPDQGKIQIQNLSVRYDSSLKPVLKHVNTLISPGQKIGICGRTGSGKSSFSLAFFRMVDMFEGRIIIDGIDIAKLPLHTLRSRLSIILQDPVLFSGTIRFNLDPEKKCSD 1448
BLAST of CF836429 vs. ExPASy Swiss-Prot
Match: MDR_LEITA (Multidrug resistance protein OS=Leishmania tarentolae GN=PGPA PE=3 SV=2) HSP 1 Score: 124.405 bits (311), Expect = 7.121e-28 Identity = 95/302 (31.46%), Postives = 130/302 (43.05%), Query Frame = -3 Query: 3 SRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFCLATLFMILLPSSIIKPEXXXXXXXXXXXXXXXLF--------WAIYMSCFVENRMVSVERIKQFTE-------------------------------IPSEAAWKMEDRLPPPNWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEE 791 +RE R+ SI +PV ES+ G TI +GK QE + R++ + N SN WLG RLE L C+ T FM+ I K E + W + VE M SVER+ +T+ + E+A L P G++ L +Q+RYR PLVL+G++ I EK+G+VGRTGSGKSTL+ F R+VE +R F +IPQ+PVLF+GTVR N+DP + S E Sbjct: 1098 NRETRRIKSIAHSPVFTLLEESLQGQRTIATYGKLHLVLQEALGRLDVVYSALYMQNVSNRWLGVRLEFLS----CVVT-FMVAFIGVIGKMEGASSQNIGLISLSLTMSMTLTETLNWLVRQVAMVEANMNSVERVLHYTQEVEHEHVPEMGELVAQLVRSESGRGANVTETVVIESAGAASSALHPVQ---AGSLVLEGVQMRYREGLPLVLRGVSFQIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGVIHVNGREMSAYGLRDVRRHFSMIPQDPVLFDGTVRQNVDPFLEASSAE 1391
BLAST of CF836429 vs. ExPASy Swiss-Prot
Match: CFTR_ORNAN (Cystic fibrosis transmembrane conductance regulator OS=Ornithorhynchus anatinus GN=CFTR PE=3 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 2.072e-27 Identity = 84/284 (29.58%), Postives = 131/284 (46.13%), Query Frame = -3 Query: 3 SRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFCLATLFMILLPSSIIKPEXXXXXXXXXXXXXXXLFWAIYMSCFVENRMVSVERIKQFTEIPSEAAWKMEDRLPPP---------------------NWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEE 791 S++L +L+S ++P+ H S+ G+ T+RAFG+QT F +N + F + W R+E++ F L T IL L WA+ S V++ M SV R+ +F ++P+E E R P NWP+ G + + DL +Y P +L I+ SI G+++G++GRTGSGKSTL+ F RL+ + R FG+IPQ+ +F G+ R N+DP GQ++D+E Sbjct: 1041 SQQLKQLESEARSPIFTHLITSLKGLWTLRAFGRQTYFEALFHKALNLHTANWFLYLSTLRWFQMRIEMVFVIFFILVTFISILTTGD--GEGKVGIVLTLAMNIMGTLQWAVNASIDVDSLMRSVSRVFKFIDMPTE-----EHRPTHPAKNKDISGVLIIENQHVKREKNWPSGGQMTVQDLTAKYLDGGPAILDNISFSISSGQRVGLLGRTGSGKSTLLFAFLRLLN-TEGDIRIDGISWDAVPVQQWRKAFGVIPQKVFIFSGSFRKNLDPYGQWTDQE 1316
BLAST of CF836429 vs. ExPASy Swiss-Prot
Match: ABC4_SCHPO (ATP-binding cassette transporter abc4 OS=Schizosaccharomyces pombe GN=abc4 PE=2 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 1.028e-26 Identity = 78/256 (30.47%), Postives = 117/256 (45.70%), Query Frame = -3 Query: 9 RLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFCLATLFMILLPSSIIKPEXXXXXXXXXXXXXXXLFWAIYMSCFVENRMVSVERIKQFTEIPSEAAWKMEDRLPPPNWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSD 776 RL SI +P+ ESI GV IRAF +QT F Q R++ +R+ + N W+ R + + +A L +L + P + + ++ M S ER+ +++++P E A + ++P WP G++ + V Y + P +LK + L I+ EK+ VVGRTGSGKSTL R LR R IPQ+P+LF GTVRSN+DP + D Sbjct: 1063 RLISIYTSPIFSLLGESIVGVSVIRAFNRQTIFKQMFSERLDNLVRLQSTSYNLNRWVAVRTDGISGLVGAIAGLIALLQKD--LSPGVVGFSLNQAVIFSSSVLLFVRSCNSLQAEMNSYERVLEYSKLPQEPAPTIAGQVPA-TWPKEGDIVFNHVSVSYSAAGPTILKDVNLHINPSEKVAVVGRTGSGKSTLGLTLLRFTHRISGEIYINGRETQSVNLNALRQRISFIPQDPILFSGTVRSNLDPFDELED 1315
BLAST of CF836429 vs. ExPASy Swiss-Prot
Match: CFTR_LOXAF (Cystic fibrosis transmembrane conductance regulator OS=Loxodonta africana GN=CFTR PE=3 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 1.754e-26 Identity = 82/282 (29.08%), Postives = 129/282 (45.74%), Query Frame = -3 Query: 3 SRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFCLATLFMILLPSSIIKPEXXXXXXXXXXXXXXXLFWAIYMSCFVENRMVSVERIKQFTEIPSEAAWKMEDRLPPP-------------------NWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEE 791 S++L +L+S ++P+ H S+ G+ T+RAFG+Q F +N + F + W R+E++ F T IL L WA+ S V++ M SV RI +F ++P+E + + PP NWP+ G++ + DL +Y +L+ I+ SI G+++G++GRTGSGKSTL+ F RL+ + R FG+IPQ+ +F GT R N+DP Q SD+E Sbjct: 1038 SQQLKQLESEARSPIFTHLVTSVKGLWTLRAFGRQPYFETLFHKALNLHTANWFLYLSTLRWFQMRIEIIFVIFFIAVTFVSILTTGE--GEGTIGIILTLAMNIMNTLQWAVNSSIDVDSLMRSVSRIFKFIDMPTEESKPAKSVKPPKDGQLSKVMIIENQHVKKDYNWPSGGHMTVKDLTAKYIDGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLQQWRKAFGVIPQKVFIFSGTFRKNLDPYEQCSDQE 1316
BLAST of CF836429 vs. ExPASy Swiss-Prot
Match: CFTR_DASNO (Cystic fibrosis transmembrane conductance regulator OS=Dasypus novemcinctus GN=CFTR PE=3 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 3.907e-26 Identity = 82/282 (29.08%), Postives = 129/282 (45.74%), Query Frame = -3 Query: 3 SRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFCLATLFMILLPSSIIKPEXXXXXXXXXXXXXXXLFWAIYMSCFVENRMVSVERIKQFTEIPSEAAWKMED-RLPPPN------------------WPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEE 791 S++L +L+S ++P+ H S+ G+ T+RAFG+Q F +N + F + W R+E++ F T IL L WA+ S V++ M SV R+ +F +IP+E + +LP WP+ G + + DL +Y +L+ I+ SI G+++G++GRTGSGKSTL+ F RL+ + R FG+IPQ+ +F GT R N+DP GQ+SD+E Sbjct: 1038 SQQLKQLESEARSPIFTHLVTSLKGLWTLRAFGRQPYFEALFHKALNLHTANWFLYLSTLRWFQMRIEMIFVIFFIAVTFISILTTGE--GEGTVGIILTLAMNIMSTLQWAVNSSIDVDSLMRSVSRVFKFVDIPTEENKPTKSIKLPKDGQLSKVMIIENQHVKKDDIWPSGGQMTVKDLTAKYIDGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TKGEIQIDGVSWDSITLQEWRKAFGVIPQKVFIFSGTFRKNLDPYGQWSDQE 1316
BLAST of CF836429 vs. ExPASy Swiss-Prot
Match: CFTR_DIDMA (Cystic fibrosis transmembrane conductance regulator OS=Didelphis marsupialis virginiana GN=CFTR PE=3 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 8.704e-26 Identity = 83/282 (29.43%), Postives = 126/282 (44.68%), Query Frame = -3 Query: 3 SRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFCLATLFMILLPSSIIKPEXXXXXXXXXXXXXXXLFWAIYMSCFVENRMVSVERIKQFTEIPSEAAW-------------------KMEDRLPPPNWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEE 791 S++L +L+S + P+ H S+ G+ T+RAFG+Q F +N + F + W R+EL+ F T IL L WA+ S V++ M SV R+ +F ++P+E + E NWP+ G + + DL +Y VL+ I+ SI G+++G++GRTGSGKSTL+ F RL+ + R FG+IPQ+ +F GT R N+DP GQ+SD E Sbjct: 1038 SQQLKQLESEARTPIFTHLVTSLKGLWTLRAFGRQPYFETLFHKALNLHTASWFLYLSTLRWFQMRIELVFVIFFIAVTFISILTTGD--GEGRVGILLTLAMNIMSTLQWAVNSSIDVDSLMRSVSRVFKFIDMPTEEPLPAKPTKSLKKNQLSQVLIIENEHVNKENNWPSGGQMIVKDLTAKYTDGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLAAFLRLLN-TEGEMQIDGVSWDSIPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYGQWSDHE 1316
BLAST of CF836429 vs. ExPASy Swiss-Prot
Match: CFTR_HORSE (Cystic fibrosis transmembrane conductance regulator OS=Equus caballus GN=CFTR PE=3 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 1.137e-25 Identity = 79/282 (28.01%), Postives = 129/282 (45.74%), Query Frame = -3 Query: 3 SRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFCLATLFMILLPSSIIKPEXXXXXXXXXXXXXXXLFWAIYMSCFVENRMVSVERIKQFTEIPSEAAWKMEDRLPPPN-------------------WPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEE 791 S++L +L+S ++P+ H S+ G+ T+RAFG+Q F +N + F + W R+E++ F T IL L WA+ S V++ M SV R+ +F ++P+E + + P + WP+ G + + DL +Y +L+ I+ SI G+++G++GRTGSGKSTL+ F RL+ + R FG+IPQ+ +F GT R N+DP GQ++D+E Sbjct: 1037 SQQLKQLESEGRSPIFTHLVTSLKGLWTLRAFGRQPYFETLFHKALNLHTANWFLYLSTLRWFQMRIEMIFVIFFIAVTFISILTTGE--GEGTVGIILTLAMNIMSTLQWAVNSSIDVDSLMRSVSRVFKFIDMPTEDSKPTKSVKPSKDGQLSKVMIIENQYVKKDDIWPSGGQMTVKDLTAKYTDGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLQQWRKAFGVIPQKVFIFSGTFRKNLDPYGQWNDQE 1315
BLAST of CF836429 vs. ExPASy Swiss-Prot
Match: CFTR_MUSPF (Cystic fibrosis transmembrane conductance regulator OS=Mustela putorius furo GN=CFTR PE=3 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 1.485e-25 Identity = 78/283 (27.56%), Postives = 127/283 (44.88%), Query Frame = -3 Query: 3 SRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFCLATLFMILLPSSIIKPEXXXXXXXXXXXXXXXLFWAIYMSCFVENRMVSVERIKQFTEIPSEAAWKMEDRLPPPN--------------------WPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEE 791 S++L +L+S ++P+ H S+ G+ T+RAFG+Q F +N + F + W R+E++ F T IL + WA+ S V++ M SV R+ +F ++P+E + P WP+ G + + DL +Y +L+ I+ SI G+++G++GRTGSGKSTL+ F RL+ + R FG+IPQ+ +F GT R N+DP GQ++D+E Sbjct: 1039 SQQLKQLESEGRSPIFTHLVTSLKGLWTLRAFGRQPYFETLFHKALNLHTANWFLYLSTLRWFQMRMEIIFVIFFIAITFISILTTGEGVGAVGIILTLAMNIMGTLQ--WAVNSSIDVDSLMRSVSRVFKFIDMPAEESKPPTKSFKPSKDVQLSKVLITENHHVREDDIWPSGGQMTVKDLTAKYIDGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLQEWRKAFGVIPQKVFIFSGTFRKNLDPYGQWNDQE 1318 The following BLAST results are available for this feature:
BLAST of CF836429 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 114
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CF836429 ID=CF836429; Name=CF836429; organism=Citrus sinensis; type=EST; length=793bpback to top |