CF836429
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF836429 vs. ExPASy Swiss-Prot
Match: CFTR_MUNMU (Cystic fibrosis transmembrane conductance regulator OS=Muntiacus muntjak GN=CFTR PE=3 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 3.308e-25 Identity = 80/282 (28.37%), Postives = 127/282 (45.04%), Query Frame = -3 Query: 3 SRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFCLATLFMILLPSSIIKPEXXXXXXXXXXXXXXXLFWAIYMSCFVENRMVSVERIKQFTEIPSEAAWKMEDRLPPPN-------------------WPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEE 791 S++L +L+S ++P+ H S+ G+ T+RAFG+Q F +N + F + W R+E++ F T IL L WA+ S V++ M SV R+ +F ++P+E P + WP+ G + + DL +Y +L+ I+ SI G+++G++GRTGSGKSTL+ F RL+ + R FG+IPQ+ +F GT R N+DP GQ+SD+E Sbjct: 1037 SQQLKQLESEGRSPIFTHLVTSLKGLWTLRAFGRQPYFETLFHKALNLHTANWFLYLSTLRWFQMRIEMIFVIFFIAVTFISILTTGE--GEGRVGIILTLAMNIMGTLQWAVNSSIDVDSLMRSVSRVFKFIDMPTEDGKPNNSFRPSKDSQLSKVMIIENQHVKKDDIWPSGGQMTVKDLTAKYIDGGNAILENISFSISPGQRVGLLGRTGSGKSTLLLAFLRLLN-TKGEIQIDGVSWDSITLQQWRKAFGVIPQKVFIFSGTFRKNLDPYGQWSDQE 1315
BLAST of CF836429 vs. ExPASy Swiss-Prot
Match: CFTR_ATEGE (Cystic fibrosis transmembrane conductance regulator OS=Ateles geoffroyi GN=CFTR PE=3 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 3.308e-25 Identity = 83/281 (29.54%), Postives = 131/281 (46.62%), Query Frame = -3 Query: 3 SRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFCLATLFMILLPSSIIKPEXXXXXXXXXXXXXXXLFWAIYMSCFVENRMVSVERIKQFTEIPSEA-------AWK---------MEDRLPPPN--WPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEE 791 S++L +L+S ++P+ H S+ G+ TIRAFG+Q F +N + F + W R+E++ F T IL L WA+ S V++ M SV R+ +F ++P+E A+K +E+ N WP+ G + + DL +Y +L+ I+ SI G+++G++GRTGSGKSTL+ F RL+ + R FG+IPQ+ +F GT R N+DP Q+SD+E Sbjct: 1037 SQQLKQLESAGRSPIFTHLVTSLKGLWTIRAFGRQPYFETLFHKALNLHTANWFLYLATLRWFQMRIEIIFVIFFIAVTFISILTTGE--GEGTVGIILTLAMNIMSTLQWAVNSSIDVDSLMRSVSRVFKFIDMPTEGKPTKSTKAYKNGQLSKVMIIENSHVKKNDIWPSGGQMTIKDLTAKYIEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLQQWRKAFGVIPQKVFIFTGTFRKNLDPYEQWSDQE 1314
BLAST of CF836429 vs. ExPASy Swiss-Prot
Match: CFTR_PIG (Cystic fibrosis transmembrane conductance regulator OS=Sus scrofa GN=CFTR PE=2 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 4.320e-25 Identity = 80/282 (28.37%), Postives = 127/282 (45.04%), Query Frame = -3 Query: 3 SRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFCLATLFMILLPSSIIKPEXXXXXXXXXXXXXXXLFWAIYMSCFVENRMVSVERIKQFTEIPSEAAWKMEDRLPPPN-------------------WPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEE 791 S++L +L+S ++P+ H S+ G+ T+RAFG+Q F +N + F + W R+E++ F T IL L WA+ S V++ M SV R+ +F ++P+E P + WP+ G + + DL +Y VL+ I+ SI G+++G++GRTGSGKSTL+ F RL+ + R FG+IPQ+ +F GT R N+DP GQ++D+E Sbjct: 1038 SQQLKQLESEGRSPIFTHLITSLKGLWTLRAFGRQPYFETLFHKALNLHTANWFLYLSTLRWFQMRIEMIFVIFFIAVTFISILTTGE--GEGTVGIILTLAMNIMSTLQWAVNSSIDVDSLMRSVSRVFKFIDMPAEGDQPNRSFKPSKDGQLSKVMIIENQHVKKDDIWPSGGQMTVKDLTAKYVDGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLLAFLRLLN-TEGEIQVDGVSWDSITLQQWRKAFGVIPQKVFIFSGTFRKNLDPYGQWNDQE 1316
BLAST of CF836429 vs. ExPASy Swiss-Prot
Match: CFTR_OTOGA (Cystic fibrosis transmembrane conductance regulator OS=Otolemur garnettii GN=CFTR PE=3 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 5.642e-25 Identity = 79/282 (28.01%), Postives = 128/282 (45.39%), Query Frame = -3 Query: 3 SRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFCLATLFMILLPSSIIKPEXXXXXXXXXXXXXXXLFWAIYMSCFVENRMVSVERIKQFTEIPSEAAWKMEDRLPPPN-------------------WPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEE 791 S++L +L+S ++P+ H S+ G+ T+RAFG+Q F +N + F + W R+E++ F T IL L WA+ S V++ M SV R+ +F ++P+E + P + WP+ G + + DL RY + +L+ I+ SI G+++G++GRTG+GKSTL+ F RL+ + R FG+IPQ+ +F GT R N+DP Q+SD+E Sbjct: 1038 SQQLKQLESEGRSPIFTHLVTSLKGLWTLRAFGRQPYFETLFHKALNLHTANWFLYLSTLRWFQMRIEMIFVVFFIAVTFISILTTGE--GEGTVGIILTLAMNIMGTLQWAVNSSIDVDSLMRSVSRVFKFIDMPTEEGRSTKSIKPSKDCQLSKVMIFENLHVKKDDIWPSGGQMTVKDLTARYIDSGNAILENISFSISPGQRVGLLGRTGAGKSTLLSAFLRLLN-TEGDIQIDGVSWDSITLQQWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDQE 1316
BLAST of CF836429 vs. ExPASy Swiss-Prot
Match: CFTR_CANFA (Cystic fibrosis transmembrane conductance regulator OS=Canis familiaris GN=CFTR PE=2 SV=2) HSP 1 Score: 114.775 bits (286), Expect = 5.642e-25 Identity = 79/283 (27.92%), Postives = 126/283 (44.52%), Query Frame = -3 Query: 3 SRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFCLATLFMILLPSSIIKPEXXXXXXXXXXXXXXXLFWAIYMSCFVENRMVSVERIKQFTEIPSEAAWKMEDRLPPPN--------------------WPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEE 791 S++L +L+S ++P+ H S+ G+ T+RAFG+Q F +N + F + W R+E++ F T IL L WA+ S V++ M SV R+ +F ++P+E + P WP+ G + + DL +Y +L+ I+ SI G+++G++GRTGSGKSTL+ RLV R+ FG+IPQ+ +F GT R N+DP GQ++D+E Sbjct: 1038 SQQLKQLESEGRSPIFTHLLTSLKGLWTLRAFGRQPYFETLFHKALNLHTANWFLYLSTLRWFQMRMEIIFVIFFIAVTFISILTTGE--GEGTVGIILTLAMNIMGTLQWAVNSSIEVDSLMRSVSRVFKFIDMPTEESKPPTKSFKPSKDAQLSKVTITENRHVREDDIWPSGGQMTVKDLTAKYIDGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSALLRLVNTEGEIQIDGVSWDSIPLQEWRRA-FGVIPQKVFIFSGTFRKNLDPYGQWNDQE 1317
BLAST of CF836429 vs. ExPASy Swiss-Prot
Match: CFTR_SAIBB (Cystic fibrosis transmembrane conductance regulator OS=Saimiri boliviensis boliviensis GN=CFTR PE=3 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 7.369e-25 Identity = 79/282 (28.01%), Postives = 126/282 (44.68%), Query Frame = -3 Query: 3 SRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFCLATLFMILLPSSIIKPEXXXXXXXXXXXXXXXLFWAIYMSCFVENRMVSVERIKQFTEIPSEAAWKMEDRLPPPN-------------------WPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEE 791 S++L +L+S ++P+ H S+ G+ T+RAFG+Q F +N + F + W R+E++ F T IL L WA+ S V++ M SV R+ +F ++P+E + N WP+ G + + DL +Y +L+ I+ SI G+++G++GRTGSGKSTL+ F RL+ + R FG+IPQ+ +F GT R N+DP Q+SD+E Sbjct: 1037 SQQLKQLESAGRSPIFTHLVTSLKGLWTLRAFGRQPYFETLFHKALNLHTASWFLYLSTLRWFQMRIEMIFVIFFIAVTFISILTTGE--GEGTVGIILTLAMNIMSTLQWAVNSSIDVDSLMRSVSRVFKFIDMPTEEGKPTKSTKAYKNGQLSKVMIIENSHVKKDDIWPSGGQMTIKDLTAKYVEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLQQWRKAFGVIPQKVFIFTGTFRKNLDPYEQWSDQE 1315
BLAST of CF836429 vs. ExPASy Swiss-Prot
Match: CFTR_SQUAC (Cystic fibrosis transmembrane conductance regulator OS=Squalus acanthias GN=CFTR PE=2 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 9.624e-25 Identity = 74/277 (26.71%), Postives = 134/277 (48.38%), Query Frame = -3 Query: 3 SRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFCLATLFMILLPSSIIKPEXXXXXXXXXXXXXXXLFWAIYMSCFVENRMVSVERIKQFTEIPSEAAWK--------------MEDRLPPPNWPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEE 791 S++L +L+S ++P+ H S+ G+ T+RAFG+Q+ F +N + F + W R++++ F +A F+ + + + + WA+ S V+ M SV R+ ++ +IP E + +E++ WP+ G + + +L +Y S+ VL+ ++ S++ G+++G++GRTG+GKSTL+ RL+ + R FG+IPQ+ +F GT R N+DP Q+SDEE Sbjct: 1051 SQQLKQLESEARSPIFSHLITSLRGLWTVRAFGRQSYFETLFHKALNLHTANWFLYLSTLRWFQMRIDIV-FVLFFIAVTFIAIATHDVGEGQVGIILTLAMNITSTLQ-WAVNSSIDVDGLMRSVSRVFKYIDIPPEGSETKNRHNANNPSDVLVIENKHLTKEWPSGGQMMVNNLTAKYTSDGRAVLQDLSFSVNAGQRVGLLGRTGAGKSTLLSALLRLLS-TEGEIQIDGISWNSVSLQKWRKAFGVIPQKVFVFSGTFRKNLDPYEQWSDEE 1324
BLAST of CF836429 vs. ExPASy Swiss-Prot
Match: CFTR_RHIFE (Cystic fibrosis transmembrane conductance regulator OS=Rhinolophus ferrumequinum GN=CFTR PE=3 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 9.624e-25 Identity = 78/282 (27.66%), Postives = 128/282 (45.39%), Query Frame = -3 Query: 3 SRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFCLATLFMILLPSSIIKPEXXXXXXXXXXXXXXXLFWAIYMSCFVENRMVSVERIKQFTEIPSEAAWKMEDRLPPPN-------------------WPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEE 791 S++L +L+S ++P+ H S+ G+ T+RAFG+Q F +N + F + W R+E++ F T IL L WA+ S V++ M SV R+ +F ++P+E + + P + WP+ G + + DL +Y +L+ I+ SI G+++G++GRTGSGKSTL+ RL+ R+ FG+IPQ+ +F GT R N+DP GQ++D+E Sbjct: 1038 SQQLKQLESEGRSPIFTHLVTSLKGLWTLRAFGRQPYFETLFHKALNLHTATWFLYLSTLRWFQMRIEMIFVVFFVAVTFISILTTGE--GEGTVGIILTLAMNIMSTLQWAVNSSIDVDSLMRSVSRVFKFIDMPAEESKYTKSVKPYKDGQLSKVMILENQHVKKDDIWPSGGQITVKDLTAKYIDGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSALLRLLNTEGEIQVDGVSWESVTVQQWRRA-FGVIPQKVFIFSGTFRKNLDPYGQWNDQE 1316
BLAST of CF836429 vs. ExPASy Swiss-Prot
Match: CFTR_CALJA (Cystic fibrosis transmembrane conductance regulator OS=Callithrix jacchus GN=CFTR PE=3 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 9.624e-25 Identity = 79/282 (28.01%), Postives = 126/282 (44.68%), Query Frame = -3 Query: 3 SRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFCLATLFMILLPSSIIKPEXXXXXXXXXXXXXXXLFWAIYMSCFVENRMVSVERIKQFTEIPSEAAWKMEDRLPPPN-------------------WPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEE 791 S++L +L+S ++P+ H S+ G+ T+RAFG+Q F +N + F + W R+E++ F T IL L WA+ S V++ M SV R+ +F ++P+E + N WP+ G + + DL +Y +L+ I+ SI G+++G++GRTGSGKSTL+ F RL+ + R FG+IPQ+ +F GT R N+DP Q+SD+E Sbjct: 1037 SQQLKQLESAGRSPIFTHLVTSLKGLWTLRAFGRQPYFETLFHKALNLHTANWFLYLSTLRWFQMRIEMIFVIFFIAVTFISILTTGE--GEGTVGIILTLAMNIMSTLQWAVNSSIDVDSLMRSVSRVFKFIDMPTEEGKPTKSTKAYKNGQLSKVMIIENSHVKKDDIWPSGGQMTIKDLTAKYIEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLQQWRKAFGVIPQKVFIFTGTFRKNLDPYEQWSDQE 1315
BLAST of CF836429 vs. ExPASy Swiss-Prot
Match: CFTR_RABIT (Cystic fibrosis transmembrane conductance regulator OS=Oryctolagus cuniculus GN=CFTR PE=2 SV=4) HSP 1 Score: 113.62 bits (283), Expect = 1.257e-24 Identity = 78/282 (27.66%), Postives = 131/282 (46.45%), Query Frame = -3 Query: 3 SRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQTTFYQENVNRVNGNLRMDFHNNGSNEWLGFRLELLGSFTFCLATLFMILLPSSIIKPEXXXXXXXXXXXXXXXLFWAIYMSCFVENRMVSVERIKQFTEIPSEAAWKMEDRLPPPN-------------------WPAHGNVDLIDLQVRYRSNTPLVLKGITLSIHGGEKIGVVGRTGSGKSTLIQVFFRLVEPSXXXXXXXXXXXXXXXXXXLRSRFGIIPQEPVLFEGTVRSNIDPIGQYSDEE 791 S++L +L+S ++P+ H S+ G+ T+RAFG+Q F +N + F + W R+E++ F +A F+ +L + + WA+ S V++ M SV R+ +F ++P+E + P N WP+ G + + L +Y + +L+ I+ SI G+++G++GRTGSGKSTL+ F RL+ + R FG+IPQ+ +F GT R N+DP Q+SD+E Sbjct: 1037 SQQLKQLESEGRSPIFTHLVTSLKGLWTLRAFGRQPYFETLFHKALNLHTANWFLYLSTLRWFQMRIEMI-FVLFFIAVAFISILTTGEGEGRVGIILTLAMNIMSTLQ-WAVNSSIDVDSLMRSVSRVFKFIDMPTEETKSTKSIKPSSNCQLSKVMIIENQHVKKDDVWPSGGQMTVKGLTAKYIDSGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLQQWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDQE 1315 The following BLAST results are available for this feature:
BLAST of CF836429 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 114
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CF836429 ID=CF836429; Name=CF836429; organism=Citrus sinensis; type=EST; length=793bpback to top |