CF836434

Overview
NameCF836434
Unique NameCF836434
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length615
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10926 contig Csv1_Contig10926:959..1573. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836434 vs. ExPASy Swiss-Prot
Match: NLTP2_TOBAC (Non-specific lipid-transfer protein 2 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.104e-29
Identity = 61/111 (54.95%), Postives = 81/111 (72.97%), Query Frame = 3
Query:   36 KLVSALVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 368
            K+   +VLCM+V  P  A+A++CGQV   LAPC+ +L+  GP+   CC GV+ L  AA++  DR+TAC CLK AA +I  +++  AAGLPGACGV+IPYKIS STDCSKV+
Sbjct:    6 KIACFVVLCMVVVAP-HAEALSCGQVQSGLAPCLPYLQGRGPLGS-CCGGVKGLLGAAKSLSDRKTACTCLKSAANAIKGIDMGKAAGLPGACGVNIPYKISPSTDCSKVQ 114          
BLAST of CF836434 vs. ExPASy Swiss-Prot
Match: NLTP2_ARATH (Non-specific lipid-transfer protein 2 OS=Arabidopsis thaliana GN=LTP2 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.054e-29
Identity = 61/114 (53.51%), Postives = 81/114 (71.05%), Query Frame = 3
Query:   33 LKLVSALVLCMLVTGPLSAQAI-TCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSI-PSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 368
            +KL   ++ CM+V GP++A A+ +CG V+G+LA CI +L  G P+   CCNGV +L   A TTPDRQ AC CL+ AA+++ P LN   AAGLP AC V+IPYKIS ST+C+ VR
Sbjct:    5 MKLACMVLACMIVAGPITANALMSCGTVNGNLAGCIAYLTRGAPLTQGCCNGVTNLKNMASTTPDRQQACRCLQSAAKAVGPGLNTARAAGLPSACKVNIPYKISASTNCNTVR 118          
BLAST of CF836434 vs. ExPASy Swiss-Prot
Match: NLTP_MAIZE (Non-specific lipid-transfer protein OS=Zea mays PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 5.295e-29
Identity = 62/110 (56.36%), Postives = 77/110 (70.00%), Query Frame = 3
Query:   39 LVSALVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMP-CCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 365
            + +A+V  +L+    S  AI+CGQV+ ++APCI + R  G  P   CC+GVRSLN AARTT DR+ ACNCLK AA  +  LN  NAA +P  CGVSIPY ISTSTDCS+V
Sbjct:   10 VATAVVALVLLAAATSEAAISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVSIPYTISTSTDCSRV 119          
BLAST of CF836434 vs. ExPASy Swiss-Prot
Match: NLTP3_LENCU (Non-specific lipid-transfer protein 3 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 5.295e-29
Identity = 60/107 (56.07%), Postives = 77/107 (71.96%), Query Frame = 3
Query:   48 ALVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 368
            ALV+CM+V  P++  A++CG V+G LAPCI +L  G      CC GV+ L AAA TT DRQ ACNCLK AA +I +LN  NAA LPG C V+IPYKIST+T+C+ ++
Sbjct:   11 ALVMCMVVIAPMAEAAVSCGTVTGDLAPCIPYLTGGAGPTDSCCAGVKKLLAAAPTTADRQAACNCLKTAAGNINNLNPGNAAALPGKCNVNIPYKISTTTNCNTIK 117          
BLAST of CF836434 vs. ExPASy Swiss-Prot
Match: NLTP2_SORBI (Non-specific lipid-transfer protein 2 OS=Sorghum bicolor GN=LTP2 PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 6.915e-29
Identity = 62/116 (53.45%), Postives = 78/116 (67.24%), Query Frame = 3
Query:   21 QMAALKLVSALVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMP-CCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 365
            ++A    V A    +++    S  A+TCGQVS ++ PC+ + R  G  P   CC+GVRSLN+AARTT DR+ ACNCLK AAR I  LN+  AA +P  CGVSIPY ISTSTDCS+V
Sbjct:    6 KLAVAIAVVAAAAAVVLAATTSEAAVTCGQVSSAIGPCLSYARGQGSGPSAGCCSGVRSLNSAARTTADRRAACNCLKNAARGIRGLNVGKAASIPSKCGVSIPYTISTSTDCSRV 121          
BLAST of CF836434 vs. ExPASy Swiss-Prot
Match: NLTP1_SORBI (Non-specific lipid-transfer protein 1 OS=Sorghum bicolor GN=LTP1 PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 6.915e-29
Identity = 64/113 (56.64%), Postives = 81/113 (71.68%), Query Frame = 3
Query:   30 ALKLVSALVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMP-CCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 365
            A+ +V+A+V+ +  T   S  AI+CGQVS ++A C+ + R  G  P   CC+GVRSLN+AARTT DR+ ACNCLK AAR I  LN  NAA +P  CGVS+PY ISTSTDCS+V
Sbjct:    7 AIAVVAAVVVVLAAT--TSEAAISCGQVSSAIALCLSYARGQGFAPSAGCCSGVRSLNSAARTTADRRAACNCLKNAARGISGLNAGNAASIPSKCGVSVPYTISTSTDCSRV 117          
BLAST of CF836434 vs. ExPASy Swiss-Prot
Match: NLTP3_ARATH (Non-specific lipid-transfer protein 3 OS=Arabidopsis thaliana GN=LTP3 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.180e-28
Identity = 59/113 (52.21%), Postives = 81/113 (71.68%), Query Frame = 3
Query:   30 ALKLVSALVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 368
            AL+  + LVL + +   + A AI+CG V+GSLAPC  +L  GG +P  CC GV++LN+ A+TTPDRQ AC C++  A+SI  LN + A+GLPG CGVSIPY IS ST+C+ ++
Sbjct:    4 ALRFFTCLVLTVCIVASVDA-AISCGTVAGSLAPCATYLSKGGLVPPSCCAGVKTLNSMAKTTPDRQQACRCIQSTAKSISGLNPSLASGLPGKCGVSIPYPISMSTNCNNIK 115          
BLAST of CF836434 vs. ExPASy Swiss-Prot
Match: NLTP4_ARATH (Non-specific lipid-transfer protein 4 OS=Arabidopsis thaliana GN=LTP4 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.541e-28
Identity = 61/114 (53.51%), Postives = 81/114 (71.05%), Query Frame = 3
Query:   30 ALKLVSALVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSI-PSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 368
            AL+  +  VL + +   + A AITCG V+ SL+PC+G+L  GG +P PCC GV+ LN  A+TTPDRQ AC CL+ AA+ + PSL    A+GLPG CGVSIPY ISTST+C+ ++
Sbjct:    4 ALRFFTCFVLTVFIVASVDA-AITCGTVASSLSPCLGYLSKGGVVPPPCCAGVKKLNGMAQTTPDRQQACRCLQSAAKGVNPSL----ASGLPGKCGVSIPYPISTSTNCATIK 112          
BLAST of CF836434 vs. ExPASy Swiss-Prot
Match: NLTP1_SOLLC (Non-specific lipid-transfer protein 1 OS=Solanum lycopersicum GN=TSW12 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.432e-28
Identity = 59/111 (53.15%), Postives = 81/111 (72.97%), Query Frame = 3
Query:   36 KLVSALVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 368
            K+   ++LCM+V  P  A+A+TCGQV+  LAPC+ +L+  GP+   CC GV++L  +A+TT DR+TAC CLK AA +I  ++LN AAG+P  C V+IPYKIS STDCS V+
Sbjct:    6 KIACFVLLCMVVVAP-HAEALTCGQVTAGLAPCLPYLQGRGPLG-GCCGGVKNLLGSAKTTADRKTACTCLKSAANAIKGIDLNKAAGIPSVCKVNIPYKISPSTDCSTVQ 114          
BLAST of CF836434 vs. ExPASy Swiss-Prot
Match: NLTP1_LENCU (Non-specific lipid-transfer protein 1 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.432e-28
Identity = 67/119 (56.30%), Postives = 86/119 (72.27%), Query Frame = 3
Query:   24 MAALKLVSALV--LCMLV-TGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMP-CCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 368
            MA+L+ VS LV  +CM+V + P++  AI+CG VSG+L PC+ +L+ GGP P P CC GV+ LN AARTT DR+ ACNCLK +A SI  L   N A LPG CGV +PY ISTST+C+ +R
Sbjct:    1 MASLR-VSCLVALMCMVVISAPMAEAAISCGTVSGALVPCLTYLK-GGPGPSPQCCGGVKRLNGAARTTIDRRAACNCLKSSAGSISGLKPGNVATLPGKCGVRLPYTISTSTNCNTIR 117          
The following BLAST results are available for this feature:
BLAST of CF836434 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
NLTP2_TOBAC3.104e-2954.95Non-specific lipid-transfer protein 2 OS=Nicotiana... [more]
NLTP2_ARATH4.054e-2953.51Non-specific lipid-transfer protein 2 OS=Arabidops... [more]
NLTP_MAIZE5.295e-2956.36Non-specific lipid-transfer protein OS=Zea mays PE... [more]
NLTP3_LENCU5.295e-2956.07Non-specific lipid-transfer protein 3 OS=Lens culi... [more]
NLTP2_SORBI6.915e-2953.45Non-specific lipid-transfer protein 2 OS=Sorghum b... [more]
NLTP1_SORBI6.915e-2956.64Non-specific lipid-transfer protein 1 OS=Sorghum b... [more]
NLTP3_ARATH1.180e-2852.21Non-specific lipid-transfer protein 3 OS=Arabidops... [more]
NLTP4_ARATH1.541e-2853.51Non-specific lipid-transfer protein 4 OS=Arabidops... [more]
NLTP1_SOLLC3.432e-2853.15Non-specific lipid-transfer protein 1 OS=Solanum l... [more]
NLTP1_LENCU3.432e-2856.30Non-specific lipid-transfer protein 1 OS=Lens culi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02P08_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02P08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836434 ID=CF836434; Name=CF836434; organism=Citrus sinensis; type=EST; length=615bp
GAAAATCTCAGGCATAATCTCAAATGGCTGCCCTCAAGCTTGTTTCAGCT
TTGGTTCTGTGCATGTTGGTGACTGGTCCCCTGAGTGCTCAGGCCATAAC
ATGTGGGCAGGTGAGTGGCTCATTGGCACCATGCATCGGTTTCTTGAGAT
CGGGCGGCCCTATACCTATGCCATGCTGCAACGGCGTCAGGTCTCTCAAC
GCTGCCGCCAGAACCACACCTGACCGCCAAACTGCATGCAACTGCTTGAA
GCAAGCCGCCAGATCAATCCCTAGCCTCAACCTTAATAATGCTGCTGGTC
TTCCAGGAGCTTGTGGAGTCAGCATTCCTTACAAGATCAGCACCTCCACT
GACTGCTCTAAGGTCAGGTGAACAGGAATCTGGGCCGTTGATTTTCAGGT
TTAAGTTGACGGAGTAGAATAAATGTATAATAATAAGGACATTTTTGTGT
CCGATTTATGAGTCTCTCTCTACACTTTGTACTGCGAGTCTCGTTCGCGC
CCTCGTTTCATGTTATGTTTTATTGTCTTTGCTTTTCATGTCATCGTCAG
TTTGTGTCTATTCTGTTTATTAAATGAAATCTTGCCTTGTGTTCAGTTTA
AAAAAAAAAAAAAAA
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