CF836436

Overview
NameCF836436
Unique NameCF836436
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length715
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF836436 vs. ExPASy Swiss-Prot
Match: CYB5_ORYSJ (Cytochrome b5 OS=Oryza sativa subsp. japonica GN=Os05g0108800 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.655e-11
Identity = 29/80 (36.25%), Postives = 50/80 (62.50%), Query Frame = 2 
Query:  347 NKRLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGVDMLMKAVGKDCTALFNKYHAWVNAEFLLEKCLVGTLDDS 586
            NK++ T++EV +H S+   W ++ G+VYN+S +++ HPGG D+L+ + GKD T  F        A  ++++  VG +D S
Sbjct:    5 NKKVYTLEEVAKHNSKDDCWLIIGGKVYNVSKFLEDHPGGDDVLLSSTGKDATDDFEDVGHSTTARAMMDEYYVGDIDTS 84
The following BLAST results are available for this feature:
BLAST of CF836436 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
CYB5_ORYSJ6.655e-1136.25Cytochrome b5 OS=Oryza sativa subsp. japonica GN=O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02P11_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02P11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836436 ID=CF836436; Name=CF836436; organism=Citrus sinensis; type=EST; length=715bp
TGTAAACGCTGAAAGACTTGGAGAGATGAACAACGATAACGATTTCACAT
TTTGCAAGGTCGAAAAGAATCAAAGTTCAGATGCTGATGGTAGTGTCGAA
AATCAAAGCAGCGGGTTTTTATGGAAACAAGATGAATTGCCTTCAAAGAC
GAATAAGACGGTGGGGTTTTTGTCGTATAATGTTATTGATGCATCGTCTT
CATCAGCAGCTGGAACTTCTGTGAAAGTTGCGAGTCGTAAGCCGGCGTCT
CGGGCCAAGGTTCCTTTTGAGAAGGGCTATAGCCAAGTGGATTGGCTTAG
GCTTACTCAAACTCATCCTGATCTTGCAGGTTTGAAGGGACAATCAAATA
AGAGGCTGATAACCATGGATGAAGTTAAACAGCATCAGAGTGAAGGTTCC
ATGTGGACTGTCTTAAAAGGTCGTGTATACAATTTATCTCCGTACATGAA
GTTTCACCCTGGAGGTGTTGATATGCTGATGAAGGCGGTGGGTAAAGACT
GTACGGCTTTGTTCAATAAATACCATGCTTGGGTAAACGCCGAGTTTTTA
TTGGAGAAGTGCCTTGTGGGCACTCTGGATGATAGTCGACCAAGGCAGTG
ATACTCAGCCAACTTAGAAGTGATTCTTTGCCCATGTAATCTTACCATAC
TCCCTGGCCCCAACATTCTACTTTCCATGTTTTTGTTATACAGCATAACC
ATTCAACCCCTTTTT
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