CF836438

Overview
NameCF836438
Unique NameCF836438
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length726
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836438 vs. ExPASy Swiss-Prot
Match: ERF96_ARATH (Ethylene-responsive transcription factor ERF096 OS=Arabidopsis thaliana GN=ERF096 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.916e-13
Identity = 43/116 (37.07%), Postives = 63/116 (54.31%), Query Frame = 2
Query:  164 RYKGVRKRKWGKYVSEIRLPNSRA-RIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFPDNPPDISGGRSLKPSEIQAVAAQFANSEPLRSQSPEQSVSELQTEYLSPSISEATVQ 508
            +Y+GVR+R WGKY +EIR       R+WLG++DTAE+AARA+D A + +RG++A  NFP      SG  S         +   A S    + +   S    + EYL  S+ E  ++
Sbjct:   14 KYRGVRRRPWGKYAAEIRDSRKHGERVWLGTFDTAEEAARAYDQAAYSMRGQAAILNFPHEYNMGSGVSS---------STAMAGSSSASASASSSSRQVFEFEYLDDSVLEELLE 120          
BLAST of CF836438 vs. ExPASy Swiss-Prot
Match: ERF79_ARATH (Ethylene-responsive transcription factor 8 OS=Arabidopsis thaliana GN=ERF8 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.916e-13
Identity = 34/57 (59.65%), Postives = 44/57 (77.19%), Query Frame = 2
Query:  164 RYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNF 334
            RY+GVRKR WG+Y +EIR P  + R+WLG++DTA++AARA+DAA    RG  AK NF
Sbjct:   30 RYRGVRKRPWGRYAAEIRDPVKKTRVWLGTFDTAQQAARAYDAAARDFRGVKAKTNF 86          
BLAST of CF836438 vs. ExPASy Swiss-Prot
Match: ERF03_ARATH (Ethylene-responsive transcription factor ERF003 OS=Arabidopsis thaliana GN=ERF003 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.916e-13
Identity = 47/121 (38.84%), Postives = 67/121 (55.37%), Query Frame = 2
Query:  164 RYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFPDNPPDISGGRSLKPSEIQAVAAQFANSEPLRSQSPEQSVSELQTEYLSPSISEATVQLDSDGV 526
            R++GVR+R WG +VSEIR P  + RIWLG+++TAE AARA+D A   + G  A+ NFP NP  I    S   S    + A+         Q  +Q+ ++ QT+      +  +   DSDGV
Sbjct:    7 RFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPYNPNAIPTSSSKLLS--ATLTAKLHKCYMASLQMTKQTQTQTQTQ------TARSQSADSDGV 119          
BLAST of CF836438 vs. ExPASy Swiss-Prot
Match: ABI4_ARATH (Ethylene-responsive transcription factor ABI4 OS=Arabidopsis thaliana GN=ABI4 PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.916e-13
Identity = 39/103 (37.86%), Postives = 57/103 (55.34%), Query Frame = 2
Query:  149 EGSDSRYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFPDNPPDISGGRSLKPSEIQAVAAQFANSEPLRSQSPEQSVS 457
            + S  RY+GVR+R WGK+V+EIR P  R R WLG++ TAE AARA+D A   L G  A+ N   + P      S   S   + +   ++++ LR   P  + +
Sbjct:   49 DNSKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFATAEDAARAYDRAAVYLYGSRAQLNLTPSSPSSVSSSSSSVSAASSPSTSSSSTQTLRPLLPRPAAA 151          
BLAST of CF836438 vs. ExPASy Swiss-Prot
Match: RAP23_ARATH (Ethylene-responsive transcription factor RAP2-3 OS=Arabidopsis thaliana GN=RAP2-3 PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.503e-13
Identity = 34/63 (53.97%), Postives = 46/63 (73.02%), Query Frame = 2
Query:  167 YKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFPD--NPP 349
            Y+G+RKR WGK+ +EIR P    R+WLG+++TAE+AA A+D A   +RG  AK NFPD  +PP
Sbjct:   79 YRGIRKRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAAMAYDVAAKQIRGDKAKLNFPDLHHPP 141          
BLAST of CF836438 vs. ExPASy Swiss-Prot
Match: ERF24_ARATH (Ethylene-responsive transcription factor ERF024 OS=Arabidopsis thaliana GN=ERF024 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.269e-13
Identity = 40/88 (45.45%), Postives = 54/88 (61.36%), Query Frame = 2
Query:  152 GSDSRYKGVRKRK-WGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFPDNPPDISGGRSLKPSEIQAVAAQFA 412
            G    Y+GVR+RK   K+VSEIR P    RIWLG++ T E AA A+D A   L+G  A+ NFP++   +    S+ P++IQA AA  A
Sbjct:   10 GRHPLYRGVRQRKNSNKWVSEIREPRKPNRIWLGTFSTPEMAAIAYDVAALALKGSQAELNFPNSVSSLPAPTSMSPADIQAAAASAA 97          
BLAST of CF836438 vs. ExPASy Swiss-Prot
Match: DRE1F_ARATH (Dehydration-responsive element-binding protein 1F OS=Arabidopsis thaliana GN=DREB1F PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.269e-13
Identity = 39/82 (47.56%), Postives = 52/82 (63.41%), Query Frame = 2
Query:  167 YKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFPDNPPDISGGRSLKPSEIQAVAAQFA 412
            Y+G+R+R   K+V E+R P  + RIWLG+Y TA+ AARA D A+  LRGRSA  NF D+   +    S  P  I+ VAA+ A
Sbjct:   30 YRGIRRRNGDKWVCEVREPTHQRRIWLGTYPTADMAARAHDVAVLALRGRSACLNFADSAWRLPVPESNDPDVIRRVAAEAA 111          
BLAST of CF836438 vs. ExPASy Swiss-Prot
Match: ERF83_ARATH (Ethylene-responsive transcription factor 7 OS=Arabidopsis thaliana GN=ERF7 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.269e-13
Identity = 38/75 (50.67%), Postives = 52/75 (69.33%), Query Frame = 2
Query:  119 MVKHAVEKPAEGS--DSRYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFP 337
            +V  A+   A GS  + RY+GVRKR WG++ +EIR P  ++R+WLG++D+A  AARA+D A   LRG  AK NFP
Sbjct:    9 VVGPALPVTAGGSVKEPRYRGVRKRPWGRFAAEIRDPLKKSRVWLGTFDSAVDAARAYDTAARNLRGPKAKTNFP 83          
BLAST of CF836438 vs. ExPASy Swiss-Prot
Match: ERF81_ARATH (Ethylene-responsive transcription factor 12 OS=Arabidopsis thaliana GN=ERF12 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.269e-13
Identity = 42/90 (46.67%), Postives = 56/90 (62.22%), Query Frame = 2
Query:  167 YKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFPDNPPDISGGRSLKPSEIQAVAAQFANSEPLRSQ 436
            Y+GVRKR WG+Y +EIR P  + R+WLG++DT E+AA A+D A   LRG  AK NFP     +S   +  PS   A  A  AN++P + Q
Sbjct:   12 YRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARFLRGIKAKTNFPS---PLSLDLNHLPSAPSAATAA-ANNQPHQHQ 97          
BLAST of CF836438 vs. ExPASy Swiss-Prot
Match: ERF77_ARATH (Ethylene-responsive transcription factor 10 OS=Arabidopsis thaliana GN=ERF10 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.269e-13
Identity = 32/63 (50.79%), Postives = 45/63 (71.43%), Query Frame = 2
Query:  149 EGSDSRYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFP 337
            +  + RY+GVR+R WG+Y +EIR P  + R+WLGS++T E+AARA+D+A    RG  A  NFP
Sbjct:   47 KSKEVRYRGVRRRPWGRYAAEIRDPVKKKRVWLGSFNTGEEAARAYDSAAIRFRGSKATTNFP 109          
The following BLAST results are available for this feature:
BLAST of CF836438 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
ERF96_ARATH1.916e-1337.07Ethylene-responsive transcription factor ERF096 OS... [more]
ERF79_ARATH1.916e-1359.65Ethylene-responsive transcription factor 8 OS=Arab... [more]
ERF03_ARATH1.916e-1338.84Ethylene-responsive transcription factor ERF003 OS... [more]
ABI4_ARATH1.916e-1337.86Ethylene-responsive transcription factor ABI4 OS=A... [more]
RAP23_ARATH2.503e-1353.97Ethylene-responsive transcription factor RAP2-3 OS... [more]
ERF24_ARATH3.269e-1345.45Ethylene-responsive transcription factor ERF024 OS... [more]
DRE1F_ARATH3.269e-1347.56Dehydration-responsive element-binding protein 1F ... [more]
ERF83_ARATH4.269e-1350.67Ethylene-responsive transcription factor 7 OS=Arab... [more]
ERF81_ARATH4.269e-1346.67Ethylene-responsive transcription factor 12 OS=Ara... [more]
ERF77_ARATH4.269e-1350.79Ethylene-responsive transcription factor 10 OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02P12_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02P12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836438 ID=CF836438; Name=CF836438; organism=Citrus sinensis; type=EST; length=726bp
TAAAAGCAAACACGTATACGAGAATCATCATCCAAATCACACTCAATAGT
TCCGAGTCAACTCGATACAGCACCACTCGTCTAAATCAAGAATACCCATA
ACCTGAAGCCCTTTAAAAATGGTGAAGCACGCAGTCGAAAAGCCTGCTGA
AGGAAGTGACTCTCGTTACAAGGGTGTCCGAAAGCGAAAGTGGGGGAAAT
ATGTGTCTGAAATCAGACTACCCAACAGCCGTGCCCGTATCTGGCTGGGC
TCCTACGACACAGCAGAAAAAGCAGCGCGTGCTTTCGACGCTGCTTTGTT
TTGCTTACGTGGCCGATCAGCCAAGTTTAATTTCCCGGACAACCCACCCG
ACATATCAGGCGGGCGCTCACTTAAGCCATCTGAGATTCAAGCTGTGGCG
GCTCAGTTCGCGAATTCGGAGCCGCTGAGGAGTCAATCACCAGAACAGTC
GGTGTCCGAATTGCAAACGGAGTACTTATCGCCGTCGATTTCTGAGGCAA
CGGTTCAGTTGGACAGCGATGGGGTTTTTGACGGGTCTTTATTGGATCTT
TTAACGGCATCGAGTTCCAATAACTACCCTTCCGAATATGGGATATTTCC
TGGGTTTGATGACCTGTCTAATGACATTTTTACTCCGCAACTCCCAGCTG
TTGATTTTGCAGACGAGAATTTTGATGGGCTATTGTTAAATCAAGATTCA
TTTCTTTGGAATTTTTAAATTAGTAA
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