CF836439

Overview
NameCF836439
Unique NameCF836439
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length630
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836439 vs. ExPASy Swiss-Prot
Match: NACB1_YEAS7 (Nascent polypeptide-associated complex subunit beta-1 OS=Saccharomyces cerevisiae (strain YJM789) GN=EGD1 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.335e-14
Identity = 47/107 (43.93%), Postives = 62/107 (57.94%), Query Frame = -2
Query:  297 IPAIEEVNIFKEDVVIQFLNPKVQASIAA--NTWVVSGAPQTKKLQDIFPGIINQLGPDNLDTLRKLAEQFQKQAPNAGSGAPTTQEDAADEVPELVAGETFEAAAE 611
            I  + E N FK+D  +   N KV   +AA  NT V  G PQ K LQD+FPGII+QLGP+ +  L +LA Q +K      + AP   E   + +PELV G+TF+A  E
Sbjct:   56 IDNVAEANFFKDDGKVMHFN-KVGVQVAAQHNTSVFYGLPQEKNLQDLFPGIISQLGPEAIQALSQLAAQMEKHE----AKAPADAEKKDEAIPELVEGQTFDADVE 157          
BLAST of CF836439 vs. ExPASy Swiss-Prot
Match: BT3L3_HUMAN (Transcription factor BTF3 homolog 3 OS=Homo sapiens GN=BTF3L3 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.743e-14
Identity = 44/101 (43.56%), Postives = 64/101 (63.37%), Query Frame = -2
Query:  330 RIGVNAIPAIEEVNIF-KEDVVIQFLNPKVQASIAANTWVVSGAPQTKKLQDIFPGIINQLGPDNLDTLRKLAEQFQKQAPNAGSGAPTTQEDAADEVPEL 629
            ++ VN I  IE+VN+F  +  VI F NPK QAS+A NT+ ++G  + K++ ++ P +++QLG D+L +LR+LAE   KQ P  G     T  D  D VPEL
Sbjct:   80 KLQVNNISGIEKVNMFTNQGTVIHFNNPKFQASLAVNTFTITGHAEAKQVTEMLPSVLSQLGADSLTSLRRLAEVLPKQ-PVDGKAPLATGGDDDDGVPEL 179          
BLAST of CF836439 vs. ExPASy Swiss-Prot
Match: NACB_ASHGO (Nascent polypeptide-associated complex subunit beta OS=Ashbya gossypii GN=EGD1 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.073e-14
Identity = 46/108 (42.59%), Postives = 64/108 (59.26%), Query Frame = -2
Query:  297 IEEVNIFKED-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDIFPGIINQLGPDNLDTLRKLAEQFQKQAPNAGSGAPTTQ-----EDAADEVPELVAGETFEAAAE 602
            +EE N FK+D  V+ F    VQ +   NT V  G PQ K LQD+FP II QLG +++D L +LA Q Q    NA + AP T+     E   +++PEL+ G++F+A  E
Sbjct:   58 VEEANFFKDDGSVLHFNKVGVQVAPQHNTSVFYGIPQEKSLQDLFPSIIPQLGSESIDALTQLATQLQ----NAQAAAPATEGHEAGEKKDNDIPELIEGQSFDADVE 161          
BLAST of CF836439 vs. ExPASy Swiss-Prot
Match: NACB_DEBHA (Nascent polypeptide-associated complex subunit beta OS=Debaryomyces hansenii GN=EGD1 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 9.567e-13
Identity = 42/109 (38.53%), Postives = 63/109 (57.80%), Query Frame = -2
Query:  309 RIGVNAIPAIEEVNIFKED-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDIFPGIINQLGPDNLDTLRKLAEQFQK-QAPNAGSGAPTTQEDAADEVPELVAGETFE 629
            ++    I  IEE N FKED  V+ F    VQ +   NT+ ++G PQ K +  + P I+ QLG +NL+ LRKLAEQ Q  + P   +G     E A +++P+L+ G+ F+
Sbjct:   46 KLKAQKIEGIEEANFFKEDGKVLHFNRVGVQGAAQHNTFALTGYPQEKDVTQLIPQILPQLGAENLEILRKLAEQIQAGKNPELNAGG---AEGAEEDIPDLIEGQKFD 151          
BLAST of CF836439 vs. ExPASy Swiss-Prot
Match: NACB_KLULA (Nascent polypeptide-associated complex subunit beta OS=Kluyveromyces lactis GN=EGD1 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.249e-12
Identity = 43/104 (41.35%), Postives = 60/104 (57.69%), Query Frame = -2
Query:  297 IEEVNIFKED-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDIFPGIINQLGPDNLDTLRKLAEQFQK-QAPNAGSGAPTTQEDAADEVPELVAGETFEAAAE 602
            +++ N FK+D  V+ F    VQ +   NT V  G PQ K LQ++FP II Q+G D ++ L ++A Q Q  Q  N  + AP  +    D +PELV G+TFEA  E
Sbjct:   56 VQQANFFKDDGTVLHFNKVGVQVAPQHNTSVFYGIPQEKSLQELFPDIIPQMGADAINALTQMASQLQSAQGANQQAAAPEAEGKDID-IPELVEGQTFEADVE 158          
BLAST of CF836439 vs. ExPASy Swiss-Prot
Match: NACB_YARLI (Nascent polypeptide-associated complex subunit beta OS=Yarrowia lipolytica GN=EGD1 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.131e-12
Identity = 44/115 (38.26%), Postives = 62/115 (53.91%), Query Frame = -2
Query:  297 RIGVNAIPAIEEVNIFKED-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDIFPGIINQLGPDNLDTLRKLAEQF---QKQAPNAGSGAPTTQEDAADEVPELVAGETFEAAAE 629
            +     I  I EVN+FKED  V+ F    V+ S+A+NT+ +SG  Q K + ++ P I+ Q+G D L  L++ A QF   Q+QA     G    +E   DE+P LV  E FE   E
Sbjct:   50 KFNAQEITGISEVNMFKEDGTVLHFPKVHVEGSVASNTFAISGPSQQKDIAELIPDILPQMGQDALLQLQQAAVQFSKLQEQAKKTAGGPDAAKEAGDDEIPNLV--ENFEDNVE 162          
BLAST of CF836439 vs. ExPASy Swiss-Prot
Match: NACB_PICST (Nascent polypeptide-associated complex subunit beta OS=Pichia stipitis GN=EGD1 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.784e-12
Identity = 41/110 (37.27%), Postives = 63/110 (57.27%), Query Frame = -2
Query:  309 RIGVNAIPAIEEVNIFKED-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDIFPGIINQLGPDNLDTLRKLAEQFQ--KQAPNAGSGAPTTQEDAADEVPELVAGETFE 629
            ++    I  +EE N F+ED  V+ F    VQ + A+NT+  +G PQ K +  + P I+ QLG +NL+ LR+LAEQ Q  K      +GAP   ++    +P+L+ GE F+
Sbjct:   45 KLKATKIENVEEANFFREDGKVLHFNRVGVQGAAASNTFAFTGYPQEKNVTQLIPQILPQLGAENLEILRQLAEQLQAGKAPTELNAGAPAGGDEG---IPDLIDGEKFD 151          
BLAST of CF836439 vs. ExPASy Swiss-Prot
Match: NACB_CANGA (Nascent polypeptide-associated complex subunit beta OS=Candida glabrata GN=EGD1 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.201e-12
Identity = 44/107 (41.12%), Postives = 61/107 (57.01%), Query Frame = -2
Query:  297 IPAIEEVNIFKED-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDIFPGIINQLGPDNLDTLRKLAEQFQKQAPNAGSGAPTTQEDAADE-VPELVAGETFEAAAE 611
            I  + E N FK+D  V+ F    VQ +   NT V  G  Q K LQ++FPGII+QLG + +  L +LA Q +K   N  +G      +A DE +PELV G++F+A  E
Sbjct:   56 IDNVAEANFFKDDGKVLHFNKVGVQVAPQHNTSVFYGMAQEKNLQELFPGIISQLGGEAIQALSQLAAQMEKAQANENAG------EAKDEAIPELVEGQSFDAEVE 156          
BLAST of CF836439 vs. ExPASy Swiss-Prot
Match: NACB_LODEL (Nascent polypeptide-associated complex subunit beta OS=Lodderomyces elongisporus GN=EGD1 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.058e-11
Identity = 41/105 (39.05%), Postives = 62/105 (59.05%), Query Frame = -2
Query:  327 RIGVNAIPAIEEVNIFKED-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDIFPGIINQLGPDNLDTLRKLAEQFQ--KQAPNAG-SGAPTTQEDAADEVPELV 629
            ++    I  +EE N FK+D  V+ F    VQ + AANT+  +G PQ K +  + P I+ QLG +NL+ LR+LAEQ Q  K   + G +G     E+A +++P+LV
Sbjct:   45 KLKATKIEGVEEANFFKDDGKVLHFNRVGVQGAPAANTFAFTGYPQEKNITQLIPQILPQLGAENLEILRQLAEQIQAGKNPKDFGAAGEAGATEEANEDIPDLV 149          
BLAST of CF836439 vs. ExPASy Swiss-Prot
Match: NACB_SCHPO (Nascent polypeptide-associated complex subunit beta OS=Schizosaccharomyces pombe GN=btf3 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.078e-11
Identity = 38/102 (37.25%), Postives = 58/102 (56.86%), Query Frame = -2
Query:  327 RIGVNAIPAIEEVNIFKEDV-VIQFLNPKVQASIAANTWVVSGAPQTKKLQDIFPGIINQLGPDNLDTLRKLAEQFQKQAPNAGSGAPTTQEDAADEVPELV 629
            ++ +  +  I+EVN+FKED  VI F  P V +S+   T  + G  + K L +I PGI+N LGP++L  LR++AEQ +      G+ A         E+P+LV
Sbjct:   47 KLNMQNLAGIQEVNMFKEDGGVINFRAPTVHSSLPNETTAIYGKAEEKTLSEILPGILNNLGPESLTALRQMAEQLKVSEGEKGADAQADD----GEIPDLV 144          
The following BLAST results are available for this feature:
BLAST of CF836439 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
NACB1_YEAS71.335e-1443.93Nascent polypeptide-associated complex subunit bet... [more]
BT3L3_HUMAN1.743e-1443.56Transcription factor BTF3 homolog 3 OS=Homo sapien... [more]
NACB_ASHGO5.073e-1442.59Nascent polypeptide-associated complex subunit bet... [more]
NACB_DEBHA9.567e-1338.53Nascent polypeptide-associated complex subunit bet... [more]
NACB_KLULA1.249e-1241.35Nascent polypeptide-associated complex subunit bet... [more]
NACB_YARLI2.131e-1238.26Nascent polypeptide-associated complex subunit bet... [more]
NACB_PICST2.784e-1237.27Nascent polypeptide-associated complex subunit bet... [more]
NACB_CANGA6.201e-1241.12Nascent polypeptide-associated complex subunit bet... [more]
NACB_LODEL1.058e-1139.05Nascent polypeptide-associated complex subunit bet... [more]
NACB_SCHPO3.078e-1137.25Nascent polypeptide-associated complex subunit bet... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02P14_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02P14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836439 ID=CF836439; Name=CF836439; organism=Citrus sinensis; type=EST; length=630bp
AACCGGATCCGACAACATCAGGACTTACAACAATAATGCACAAATAAAAA
GCCCTTGCAACACGTGCCTCCTGGATTCTGAAAGAGTAAAAGGGTTTTCA
CTGGTTTCACTGGAGCAAAACATTGAATTAAAAAGTAACCATATCTAGTG
TCACAGGGAGAATCAGATAAAACGAGAGAAAGTTGACTCCGAAAAGTAAA
ATAAAAACTCCAAAAACATAGAAAATATATAGAATAACACAAAGTCCCTC
TAAATAAAACTCTCTAAGAAGCAGCGACCGGTTTCTCTGTTTTCACCTCT
GCGGCAGCTTCAAACGTCTCCCCTGCCACAAGCTCTGGGACCTCATCGGC
GGCGTCCTCTTGAGTCGTGGGTGCACCAGATCCTGCATTAGGGGCTTGCT
TCTGAAACTGCTCCGCCAACTTCCTCAGGGTGTCCAAATTATCTGGCCCC
AATTGATTGATAATTCCAGGGAAAATATCCTGCAACTTCTTGGTTTGGGG
GGCACCACTAACTACCCATGTGTTGGCAGCAATTGAAGCTTGCACTTTGG
GATTTAAGAACTGAATAACGACGTCCTCCTTGAAAATGTTAACTTCCTCA
ATTGCAGGAATAGCATTCACTCCTATTCTC
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