CF836440

Overview
NameCF836440
Unique NameCF836440
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length701
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1053 contig Csv1_Contig1053:59..759. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836440 vs. ExPASy Swiss-Prot
Match: NACB_PHANO (Nascent polypeptide-associated complex subunit beta OS=Phaeosphaeria nodorum GN=EGD1 PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.339e-32
Identity = 72/158 (45.57%), Postives = 103/158 (65.19%), Query Frame = 3
Query:   75 MNVEKLMKMAGAVLTGGNGSVRRKKKAVHNTTTTDDHRLHSTLNRIGVNAIPAIEEVNIFKDDV-VIHFLNPKVQSSIAANTWVVSGAPQTKKLQDILPGIIGRLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQED--DDDEVPELVAGETFEAAAE 539
            M+  KL +M  +V  GG G+ RRK K VH ++ TDD +L + L ++ V  I AIEEVN+FK D  VIHF  PKV +S+ +NT+ + G  + K+L +++PGI+ +LGPD+L +LRKLAE +Q      G       +D  DDD++PELVAG+ FE+  E
Sbjct:    1 MDQAKLARMQASVRIGGKGTPRRKVKKVHKSSGTDDKKLQTALKKLNVQPIQAIEEVNMFKSDGNVIHFSAPKVHASVPSNTFAIYGNGEDKELTELVPGILNQLGPDSLASLRKLAESYQSMQKEKGEDGDKKDDDDEDDDDIPELVAGDNFESKTE 158          
BLAST of CF836440 vs. ExPASy Swiss-Prot
Match: NACB_AJECN (Nascent polypeptide-associated complex subunit beta OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=EGD1 PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.896e-32
Identity = 73/158 (46.20%), Postives = 106/158 (67.09%), Query Frame = 3
Query:   75 MNVEKLMKMAGAVLTG-GNGSVRRKKKAVHNTTTTDDHRLHSTLNRIGVNAIPAIEEVNIFKDDV-VIHFLNPKVQSSIAANTWVVSGAPQTKKLQDILPGIIGRLGPDNLDNLRKLAEQFQK-QAPNAGTGAPTTQEDDDDEVPELVAGETFEAAAE 539
            M+  KL ++  +V  G G G+ RRK K VH ++ TDD +L ++L ++ V  I AIEEVN+FK+D  VIHF  PKV +S+ +NT+ + G  + K+L +++PGI+ +LGPD+L +LRKLAE +Q  Q    G  A    +DDDDE+P+LV GE FE+  E
Sbjct:    1 MDQAKLARLQQSVRIGKGKGTPRRKTKKVHKSSGTDDKKLQTSLKKLNVQPIQAIEEVNMFKEDGNVIHFAAPKVHASVPSNTFAIYGNGEDKELTELVPGILNQLGPDSLASLRKLAESYQSMQKGEGGEDAKKDDDDDDDEIPDLVEGENFESKVE 158          
BLAST of CF836440 vs. ExPASy Swiss-Prot
Match: NACB_ASPNC (Nascent polypeptide-associated complex subunit beta OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=egd1 PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.646e-32
Identity = 71/156 (45.51%), Postives = 106/156 (67.95%), Query Frame = 3
Query:   75 MNVEKLMKMAGAVLTGGNGSVRRKKKAVHNTTTTDDHRLHSTLNRIGVNAIPAIEEVNIFKDDV-VIHFLNPKVQSSIAANTWVVSGAPQTKKLQDILPGIIGRLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELVAGETFEAAAE 539
            M+  KL +M  +V  GG G+ RRK K VH ++  DD +L +TL ++ V  I AIEEVN+FK+D  VIHF  PKV +S+ +NT+ + G  + K+L +++PGI+ +LGPD+L +LRKLAE +Q    N   GA   ++D++D++P+LV GE FE+  E
Sbjct:    1 MDQAKLARMQQSVRIGGKGTPRRKVKKVHKSSGADDKKLQATLKKMNVQPIQAIEEVNMFKEDGNVIHFGAPKVHASVPSNTFALYGNGEEKELTELVPGILNQLGPDSLASLRKLAESYQNMQKNQ-AGADGKKDDEEDDIPDLVEGENFESNVE 155          
BLAST of CF836440 vs. ExPASy Swiss-Prot
Match: NACB_SCLS1 (Nascent polypeptide-associated complex subunit beta OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=egd1 PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.934e-31
Identity = 73/159 (45.91%), Postives = 104/159 (65.41%), Query Frame = 3
Query:   75 MNVEKLMKMA--GAVLTG-GNGSVRRKKKAVHNTTTTDDHRLHSTLNRIGVNAIPAIEEVNIFKDDV-VIHFLNPKVQSSIAANTWVVSGAPQTKKLQDILPGIIGRLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELVAGETFEAAAE 539
            M++EKL +M   G V TG G G+ RRK K VH +T  DD +L ++L ++ V  I AIEEVN+FK D  VIHF  PKV +++ +NT+ + G  + K+L +++PGI+ +LGPD+L +LRKLAE +Q      G       E+DDD++P+LV GE FE   E
Sbjct:    1 MDMEKLKRMQARGGVRTGDGKGTPRRKVKNVHKSTGMDDKKLQTSLKKLNVQPIQAIEEVNMFKSDGNVIHFAAPKVHAAVPSNTFAIYGNGEDKELTELVPGILNQLGPDSLASLRKLAESYQSMQKAEGGEEKKDDEEDDDDIPDLVEGENFEDKVE 159          
BLAST of CF836440 vs. ExPASy Swiss-Prot
Match: NACB_BOTFB (Nascent polypeptide-associated complex subunit beta OS=Botryotinia fuckeliana (strain B05.10) GN=egd1 PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.626e-31
Identity = 72/159 (45.28%), Postives = 104/159 (65.41%), Query Frame = 3
Query:   75 MNVEKLMKMA--GAVLTG-GNGSVRRKKKAVHNTTTTDDHRLHSTLNRIGVNAIPAIEEVNIFKDDV-VIHFLNPKVQSSIAANTWVVSGAPQTKKLQDILPGIIGRLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELVAGETFEAAAE 539
            M++EKL +M   G V TG G G+ RRK K VH +T  DD +L ++L ++ V  I AIEEVN+FK D  VIHF  PKV +++ +NT+ + G  + K+L +++PGI+ +LGPD+L +LRKLAE +Q      G       ++DDD++P+LV GE FE   E
Sbjct:    1 MDMEKLKRMQARGGVRTGDGKGTPRRKVKNVHKSTGMDDKKLQTSLKKLNVQPIQAIEEVNMFKSDGNVIHFAAPKVHAAVPSNTFAIYGNGEDKELTELVPGILNQLGPDSLASLRKLAESYQSMQKAEGGEDKKDDDEDDDDIPDLVEGENFEDKVE 159          
BLAST of CF836440 vs. ExPASy Swiss-Prot
Match: NACB_ASPTN (Nascent polypeptide-associated complex subunit beta OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=egd1 PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.637e-30
Identity = 70/168 (41.67%), Postives = 108/168 (64.29%), Query Frame = 3
Query:   75 MNVEKLMKMAGAVLTG------------GNGSVRRKKKAVHNTTTTDDHRLHSTLNRIGVNAIPAIEEVNIFKDDV-VIHFLNPKVQSSIAANTWVVSGAPQTKKLQDILPGIIGRLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELVAGETFEAAAE 539
            M+  KL +M  +V  G            G G+ RRK K VH ++  DD +L +TL ++ V  IPA+EEVN+FK+D  VIHF NP+V +S+ +NT+ + G  + K+L +++PGI+ +LGPD+L +LRKLAE +Q    N   GA   ++D++D++P+LV G+ FE+  E
Sbjct:    1 MDQAKLARMQASVRIGNPPSGPRANRNRGKGTPRRKVKKVHKSSGADDKKLQATLKKMNVQPIPAVEEVNMFKEDGNVIHFGNPRVHASVPSNTFALYGNGEEKELTELVPGILNQLGPDSLASLRKLAESYQNMQKNQ-AGAEGKKDDEEDDIPDLVEGQDFESKVE 167          
BLAST of CF836440 vs. ExPASy Swiss-Prot
Match: NACB_COCIM (Nascent polypeptide-associated complex subunit beta OS=Coccidioides immitis GN=EGD1 PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.138e-30
Identity = 72/157 (45.86%), Postives = 107/157 (68.15%), Query Frame = 3
Query:   75 MNVEKLMKMAGAVLTG-GNGSVRRKKKAVHNTTTTDDHRLHSTLNRIGVNAIPAIEEVNIFKDDV-VIHFLNPKVQSSIAANTWVVSGAPQTKKLQDILPGIIGRLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELVAGETFEAAAE 539
            M+  KL ++  +V  G G G+ RRK K VH ++ TDD +L ++L ++ V  I AIEEVN+FK+D  VIHF  PKVQ+S+ +NT+ + G  + K+L +++PGI+ +LGPD+L +LRKLAE +Q      G  A    E+DD+++P+LV GETFE+  E
Sbjct:    1 MDQAKLARLQQSVRIGTGKGTPRRKTKKVHKSSGTDDKKLQTSLKKLNVQPIQAIEEVNMFKEDGNVIHFAAPKVQASVPSNTFAIYGNGEEKELTELVPGILNQLGPDSLASLRKLAESYQNMQKKEGE-AKKEGEEDDEDIPDLV-GETFESKVE 155          
BLAST of CF836440 vs. ExPASy Swiss-Prot
Match: BTF3_CAEEL (Transcription factor BTF3 homolog OS=Caenorhabditis elegans GN=icd-1 PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.763e-30
Identity = 69/157 (43.95%), Postives = 101/157 (64.33%), Query Frame = 3
Query:   81 VEKLMKMAGAVLTGGNGSVRRKKKAVHNTTTTDDHRLHSTLNRIGVNAIPAIEEVNIFKDD-VVIHFLNPKVQSSIAANTWVVSGAPQTKKLQDILPGIIGRLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELVAGETFEAAAEEKT 548
            ++KL      V  GG G+ RRKKK +H T   DD +L S L ++ V  IP IEEVN+ KDD  VIHF NPKVQ+S+ ANT+ V+G+   K++ ++LPGI+ +LGP++L +L+KLA    K  P+         + +D++VPELV    F+AA++ +T
Sbjct:   10 IKKLQAQQEHVRIGGKGTPRRKKKVIHKTAAADDKKLQSNLKKLSVTNIPGIEEVNMIKDDGTVIHFNNPKVQTSVPANTFSVTGSADNKQITEMLPGILNQLGPESLTHLKKLANNVTKLGPDG--------KGEDEDVPELVG--DFDAASKNET 156          
BLAST of CF836440 vs. ExPASy Swiss-Prot
Match: NACB_ASPOR (Nascent polypeptide-associated complex subunit beta OS=Aspergillus oryzae GN=egd1 PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.221e-30
Identity = 66/149 (44.30%), Postives = 101/149 (67.79%), Query Frame = 3
Query:   96 KMAGAVLTGGNGSVRRKKKAVHNTTTTDDHRLHSTLNRIGVNAIPAIEEVNIFKDDV-VIHFLNPKVQSSIAANTWVVSGAPQTKKLQDILPGIIGRLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELVAGETFEAAAE 539
            ++  ++   G G+ RRK K VH ++  DD +L +TL ++ V  I AIEEVN+FK+D  VIHF  PKV +S+ +NT+ + G  + K+L +++PGI+ +LGPD+L +LRKLAE +Q    N   GA   ++DD+D++P+LV GE FE+  E
Sbjct:   49 RLTNSLKNRGKGTPRRKVKKVHKSSGADDKKLQATLKKMNVQPIQAIEEVNMFKEDGNVIHFGAPKVHASVPSNTFALYGNGEEKELTELVPGILNQLGPDSLASLRKLAESYQNMQKNQ-AGAEGKKDDDEDDIPDLVEGENFESNVE 196          
BLAST of CF836440 vs. ExPASy Swiss-Prot
Match: NACB_NEOFI (Nascent polypeptide-associated complex subunit beta OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=egd1 PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.386e-29
Identity = 65/140 (46.43%), Postives = 97/140 (69.29%), Query Frame = 3
Query:  123 GNGSVRRKKKAVHNTTTTDDHRLHSTLNRIGVNAIPAIEEVNIFKDDV-VIHFLNPKVQSSIAANTWVVSGAPQTKKLQDILPGIIGRLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELVAGETFEAAAE 539
            G G+ RRK K VH ++  DD +L +TL ++ V  I AIEEVN+FK+D  VIHF  PKV +S+ +NT+ + G  + K+L +++PGI+ +LGPD+L +LRKLAE +Q     AGT     +++D+D++P+LV GE FE+  E
Sbjct:   46 GKGTPRRKVKKVHKSSGADDKKLQTTLKKMNVQPIQAIEEVNMFKEDGNVIHFAAPKVHASVPSNTFALYGNGEEKELTELVPGILNQLGPDSLASLRKLAESYQNMQKQAGTEG--KKDEDEDDIPDLVEGENFESNVE 183          
The following BLAST results are available for this feature:
BLAST of CF836440 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
NACB_PHANO1.339e-3245.57Nascent polypeptide-associated complex subunit bet... [more]
NACB_AJECN3.896e-3246.20Nascent polypeptide-associated complex subunit bet... [more]
NACB_ASPNC6.646e-3245.51Nascent polypeptide-associated complex subunit bet... [more]
NACB_SCLS11.934e-3145.91Nascent polypeptide-associated complex subunit bet... [more]
NACB_BOTFB5.626e-3145.28Nascent polypeptide-associated complex subunit bet... [more]
NACB_ASPTN1.637e-3041.67Nascent polypeptide-associated complex subunit bet... [more]
NACB_COCIM2.138e-3045.86Nascent polypeptide-associated complex subunit bet... [more]
BTF3_CAEEL4.763e-3043.95Transcription factor BTF3 homolog OS=Caenorhabditi... [more]
NACB_ASPOR6.221e-3044.30Nascent polypeptide-associated complex subunit bet... [more]
NACB_NEOFI1.386e-2946.43Nascent polypeptide-associated complex subunit bet... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02P14_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02P14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836440 ID=CF836440; Name=CF836440; organism=Citrus sinensis; type=EST; length=701bp
AGAGAACACCTTTAGGGCTCTTATCTTCTTCTTCACCAAATTCTTTGTCC
CCTCACAAAAACCCTAGCTCCAAGATGAATGTGGAGAAGCTAATGAAGAT
GGCCGGTGCAGTTCTCACCGGTGGTAATGGTAGTGTGAGAAGAAAGAAGA
AGGCTGTTCATAATACAACAACCACCGATGACCATAGGCTTCATAGCACC
TTGAATAGAATAGGAGTGAATGCTATTCCTGCAATTGAGGAAGTTAACAT
TTTCAAGGATGACGTCGTTATTCACTTCTTAAATCCCAAAGTACAATCTT
CGATTGCTGCCAACACATGGGTAGTTAGTGGTGCCCCACAAACCAAGAAG
TTGCAGGATATTCTCCCTGGAATTATCGGTCGGTTGGGGCCAGATAATTT
GGACAACCTGAGGAAGTTGGCGGAGCAGTTTCAGAAGCAAGCACCTAATG
CAGGAACTGGTGCACCCACGACTCAAGAGGACGACGACGATGAGGTCCCA
GAGCTTGTGGCAGGCGAGACGTTTGAAGCTGCCGCAGAGGAGAAAACATA
TAAACCTGACGCTGCTTCTTAGAGAGTTTTATCTAGAGGGACTTTGTGTT
ATTCTATATATTTTCTATGTTTTTTGAGTTTTTATTTTACTTTTCCGAGT
CAACTTTCTCTTGTTCTATCTGATTCTCCCTGTGACACTAGATATTGTTA
C
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