CF836440

Overview
NameCF836440
Unique NameCF836440
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length701
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1053 contig Csv1_Contig1053:59..759. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836440 vs. ExPASy Swiss-Prot
Match: NACB_EMENI (Nascent polypeptide-associated complex subunit beta OS=Emericella nidulans GN=egd1 PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.386e-29
Identity = 71/168 (42.26%), Postives = 105/168 (62.50%), Query Frame = 3
Query:   75 MNVEKLMKMAGAVLTGGNGSVRRKKKAVHNTTTTDDHRLHSTLNRIGVNAIPAIEEVNIFKDD-VVIHFLNP------------KVQSSIAANTWVVSGAPQTKKLQDILPGIIGRLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELVAGETFEAAAE 539
            M+  KL +M  +V  GG G+ RRK K VH T+  DD +L +TL ++ V  I AIEEVN+FK+D  VIHF  P            KV +S+ +NT+ + G  + K+L +++PGI+ +LGPD+L +LRKLAE +Q    N    A   ++DD+D++P+LV GE FE + +
Sbjct:    1 MDQAKLARMQASVRIGGKGTPRRKVKKVHKTSGADDKKLQATLKKMNVQPIQAIEEVNMFKEDGNVIHFAAPKEERALTVGCEIKVHASVPSNTFALYGNGEEKELTELVPGILNQLGPDSLASLRKLAESYQNMQKNQ---AGEKKDDDEDDIPDLVEGENFEKSVD 165          
BLAST of CF836440 vs. ExPASy Swiss-Prot
Match: NACB_ASPFU (Nascent polypeptide-associated complex subunit beta OS=Aspergillus fumigatus GN=egd1 PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.364e-29
Identity = 65/140 (46.43%), Postives = 97/140 (69.29%), Query Frame = 3
Query:  123 GNGSVRRKKKAVHNTTTTDDHRLHSTLNRIGVNAIPAIEEVNIFKDDV-VIHFLNPKVQSSIAANTWVVSGAPQTKKLQDILPGIIGRLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELVAGETFEAAAE 539
            G G+ RRK K VH ++  DD +L +TL ++ V  I AIEEVN+FK+D  VIHF  PKV +S+ +NT+ + G  + K+L +++PGI+ +LGPD+L +LRKLAE +Q     A  GA   +++D+D++P+LV GE FE+  E
Sbjct:   49 GKGTPRRKVKKVHKSSGADDKKLQTTLKKMNVQPIQAIEEVNMFKEDGNVIHFAAPKVHASVPSNTFALYGNGEEKELTELVPGILNQLGPDSLASLRKLAESYQNMQKQA--GAEGKKDEDEDDIPDLVEGENFESNVE 186          
BLAST of CF836440 vs. ExPASy Swiss-Prot
Match: NACB_ASPCL (Nascent polypeptide-associated complex subunit beta OS=Aspergillus clavatus GN=egd1 PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.364e-29
Identity = 66/152 (43.42%), Postives = 102/152 (67.11%), Query Frame = 3
Query:   87 KLMKMAGAVLTGGNGSVRRKKKAVHNTTTTDDHRLHSTLNRIGVNAIPAIEEVNIFKDDV-VIHFLNPKVQSSIAANTWVVSGAPQTKKLQDILPGIIGRLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELVAGETFEAAAE 539
            ++ K A   +  G G+ RRK K VH ++  DD +L +TL ++ V  I AIEEVN+FK+D  VIHF  PKV +S+ +NT+ + G  + K+L +++PGI+ +LGPD+L +LRKLAE +Q     +  GA   +++D+D++P+LV GE FE+  E
Sbjct:   14 RIDKSATNPINRGKGTPRRKVKKVHKSSGADDKKLQTTLKKMNVQPIQAIEEVNMFKEDGNVIHFAAPKVHASVPSNTFALYGNGEEKELTELVPGILNQLGPDSLASLRKLAESYQNM-QKSQAGAEGKKDEDEDDIPDLVEGENFESNVE 164          
BLAST of CF836440 vs. ExPASy Swiss-Prot
Match: NACB_MAGGR (Nascent polypeptide-associated complex subunit beta OS=Magnaporthe grisea GN=EGD1 PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.878e-29
Identity = 68/153 (44.44%), Postives = 96/153 (62.75%), Query Frame = 3
Query:   84 EKLMKMAGAVLTGGNGSVRRKKKAVHNTTTTDDHRLHSTLNRIGVNAIPAIEEVNIFKDDV-VIHFLNPKVQSSIAANTWVVSGAPQTKKLQDILPGIIGRLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELVAGETFEAAAE 539
            E+L K+  +   GG G+ RRK K     +  DD +L  TL ++ V  I AIEEVN+FK D  VIHF  PKV +++ ANT+ + G  + K+L +++PGI+ +LGPD+L +LRKLAE +Q      G      +E DDD++P+LVAGE FE   E
Sbjct:    6 ERLKKLGASARIGGKGTPRRKMKRAPARSGGDDKKLQQTLKKLNVQPIQAIEEVNMFKSDGNVIHFAAPKVHAAVPANTFAIYGNGEDKELTELVPGILNQLGPDSLASLRKLAESYQNMQKADG-----DKEADDDDIPDLVAGENFEDKVE 153          
BLAST of CF836440 vs. ExPASy Swiss-Prot
Match: NACB_NEUCR (Nascent polypeptide-associated complex subunit beta OS=Neurospora crassa GN=egd-1 PE=3 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 3.774e-27
Identity = 65/154 (42.21%), Postives = 98/154 (63.64%), Query Frame = 3
Query:   84 EKLMKMAGAVLTG-GNGSVRRKKKAVHNTTTTDDHRLHSTLNRIGVNAIPAIEEVNIFKDDV-VIHFLNPKVQSSIAANTWVVSGAPQTKKLQDILPGIIGRLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELVAGETFEAAAE 539
            E+L K+  +   G G G+ RRK K     +  DD +L +TL ++ V  I AIEEVN+FK D  VIHF  PKV +++ ANT+ + G  + K+L +++PGI+ +LGPD+L +LRKLAE +Q    N        ++ ++D++P+LVAGE FE+  E
Sbjct:    6 ERLKKLGASARIGIGKGTPRRKVKRAPARSAGDDKKLQATLKKVNVQPIQAIEEVNMFKSDGNVIHFAAPKVHAAVPANTFAIYGNGEDKELTELVPGILNQLGPDSLASLRKLAESYQNMQKN-------EKDAEEDDIPDLVAGENFESKVE 152          
BLAST of CF836440 vs. ExPASy Swiss-Prot
Match: NACB_CHAGB (Nascent polypeptide-associated complex subunit beta OS=Chaetomium globosum GN=EGD1 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.774e-27
Identity = 66/154 (42.86%), Postives = 97/154 (62.99%), Query Frame = 3
Query:   84 EKLMKMAGAVLTG-GNGSVRRKKKAVHNTTTTDDHRLHSTLNRIGVNAIPAIEEVNIFKDDV-VIHFLNPKVQSSIAANTWVVSGAPQTKKLQDILPGIIGRLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELVAGETFEAAAE 539
            E+L K+  +   G G G+ RRK K     +  DD +L  +L ++ V  I AIEEVN+FK D  VIHF  PKV +++ +NT+ + G  + K+L +++PGI+ +LGPD+L +LRKLAE +Q             ++DDDDE+P+LVAGE+FE   E
Sbjct:    6 ERLKKLGASARIGTGKGTPRRKVKRAPARSGADDKKLQQSLKKLNVQPIQAIEEVNMFKSDGNVIHFAAPKVHAAVPSNTFAIYGNGEDKELTELVPGILNQLGPDSLASLRKLAESYQNM---------QQKKDDDDEIPDLVAGESFENKVE 150          
BLAST of CF836440 vs. ExPASy Swiss-Prot
Match: BT3L3_HUMAN (Transcription factor BTF3 homolog 3 OS=Homo sapiens GN=BTF3L3 PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.437e-27
Identity = 64/141 (45.39%), Postives = 89/141 (63.12%), Query Frame = 3
Query:   87 KLMKMAGAVLTGGNGSVRRKKKAVHNTTTTDDHRLHSTLNRIGVNAIPAIEEVNIFKDD-VVIHFLNPKVQSSIAANTWVVSGAPQTKKLQDILPGIIGRLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPEL 506
            KL K+   V  GG G+  RKKK  H T T DD +L  +L ++ VN I  IE+VN+F +   VIHF NPK Q+S+A NT+ ++G  + K++ ++LP ++ +LG D+L +LR+LAE   KQ P  G     T  DDDD VPEL
Sbjct:   40 KLAKLQAQVRIGGKGTAHRKKKVFHRTATADDKKLQFSLKKLQVNNISGIEKVNMFTNQGTVIHFNNPKFQASLAVNTFTITGHAEAKQVTEMLPSVLSQLGADSLTSLRRLAEVLPKQ-PVDGKAPLATGGDDDDGVPEL 179          
BLAST of CF836440 vs. ExPASy Swiss-Prot
Match: NACB_CRYNE (Nascent polypeptide-associated complex subunit beta OS=Cryptococcus neoformans GN=EGD1 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.613e-25
Identity = 71/172 (41.28%), Postives = 109/172 (63.37%), Query Frame = 3
Query:   75 MNVEKLMKMAGAVLTGGNGSVRRK--KKAVHNTTTTDDHRLHSTLNRIGVNAIPAIEEVNIFKDDV-VIHFLNPKVQ--SSIAANTWVVSGAPQTKKLQDILPGIIGRLGPDNLDNLRKLAEQFQK--------QAPNAGTGAPTTQE-DDDDEVPELVAGETFEAAAEEKT 548
            M+ EKL K+   V  GG G+ RRK  KK+V  ++  DD +L + L ++GV  I  +EEVN+FK+D  V+HF  P+VQ  +++ +NT  + G  QTK+L +++PGI+ +LGPD+L NLR+LAE +Q          A + G GA   +E + DDE+P+LV  + F+ A  +K+
Sbjct:    1 MDKEKLAKLQSQVRIGGKGTPRRKVVKKSV-TSSQGDDRKLQAALKKLGVQPITGVEEVNMFKEDGNVLHFGAPRVQVHAALPSNTLAIYGPGQTKELTELVPGILNQLGPDSLANLRRLAESYQSLTARQAAAAAGSGGEGAGEAKEGEGDDEIPDLV--DNFDEAEVKKS 169          
BLAST of CF836440 vs. ExPASy Swiss-Prot
Match: NACB_GIBZE (Nascent polypeptide-associated complex subunit beta OS=Gibberella zeae GN=EGD1 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.990e-24
Identity = 64/159 (40.25%), Postives = 91/159 (57.23%), Query Frame = 3
Query:   84 EKLMKMAGAVLTG----------GNGSVRRKKKAVHNTTTTDDHRLHSTLNRIGVNAIPAIEEVNIFKDDV-VIHFLNPKVQSSIAANTWVVSGAPQTKKLQDILPGIIGRLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELVAGETFE 527
            E+L K+     TG          G G+ RRK K     +  DD +L   L ++    I AIEEVN+FK D  VIHF  PKV +++ +NT+ + G  + K+L +++PGI+ +LGPD+L +LRKLAE +Q      G        +DDDE+P+LV GE FE
Sbjct:    6 ERLKKLGLGARTGRTSQLTEQLSGKGTPRRKVKRAPARSGADDKKLQLALKKLNTQPIQAIEEVNMFKQDGNVIHFAAPKVHAAVPSNTFAIYGNGEDKELTELVPGILNQLGPDSLASLRKLAESYQNLQKEKG--------EDDDEIPDLVEGENFE 156          
BLAST of CF836440 vs. ExPASy Swiss-Prot
Match: NACB_USTMA (Nascent polypeptide-associated complex subunit beta OS=Ustilago maydis GN=EGD1 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.905e-24
Identity = 64/160 (40.00%), Postives = 97/160 (60.62%), Query Frame = 3
Query:   75 MNVEKLMKMAGAVLTGGNGSVRRKKKAVHNTTTTDDHRLHSTLNRIGVNAIPAIEEVNIFKDDV-VIHFLNPKVQSSIAANTWVVSGAPQTKKLQDILPGIIGRLGPDNLDNLRKLAEQFQ-KQAPNAGTGAPTTQEDDDDEVPELVAGETFEAAAEEKT 548
            +N EKL K+  A  TGG G+ RRK          +D +L + L ++ V  +  +EEVN+FK+D  V+HF  PKV     +NT+ V G    K+L +++PGI+ +LGPD+L +LRKLAE +Q   A +A + A      DDD+VP++V  E F+ A +++T
Sbjct:    3 LNQEKLAKLQAASRTGGKGTPRRKMAPKPKGPGGEDPKLQAALKKLQVEPVSGVEEVNMFKEDGNVLHFAAPKVHGLPTSNTFAVYGNGVDKELTELVPGILNQLGPDSLASLRKLAESYQAMNAQHAASQAAAAGTKDDDDVPDVV--ENFDEADKKET 160          
The following BLAST results are available for this feature:
BLAST of CF836440 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
NACB_EMENI1.386e-2942.26Nascent polypeptide-associated complex subunit bet... [more]
NACB_ASPFU2.364e-2946.43Nascent polypeptide-associated complex subunit bet... [more]
NACB_ASPCL2.364e-2943.42Nascent polypeptide-associated complex subunit bet... [more]
NACB_MAGGR6.878e-2944.44Nascent polypeptide-associated complex subunit bet... [more]
NACB_NEUCR3.774e-2742.21Nascent polypeptide-associated complex subunit bet... [more]
NACB_CHAGB3.774e-2742.86Nascent polypeptide-associated complex subunit bet... [more]
BT3L3_HUMAN6.437e-2745.39Transcription factor BTF3 homolog 3 OS=Homo sapien... [more]
NACB_CRYNE4.613e-2541.28Nascent polypeptide-associated complex subunit bet... [more]
NACB_GIBZE2.990e-2440.25Nascent polypeptide-associated complex subunit bet... [more]
NACB_USTMA3.905e-2440.00Nascent polypeptide-associated complex subunit bet... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02P14_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02P14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836440 ID=CF836440; Name=CF836440; organism=Citrus sinensis; type=EST; length=701bp
AGAGAACACCTTTAGGGCTCTTATCTTCTTCTTCACCAAATTCTTTGTCC
CCTCACAAAAACCCTAGCTCCAAGATGAATGTGGAGAAGCTAATGAAGAT
GGCCGGTGCAGTTCTCACCGGTGGTAATGGTAGTGTGAGAAGAAAGAAGA
AGGCTGTTCATAATACAACAACCACCGATGACCATAGGCTTCATAGCACC
TTGAATAGAATAGGAGTGAATGCTATTCCTGCAATTGAGGAAGTTAACAT
TTTCAAGGATGACGTCGTTATTCACTTCTTAAATCCCAAAGTACAATCTT
CGATTGCTGCCAACACATGGGTAGTTAGTGGTGCCCCACAAACCAAGAAG
TTGCAGGATATTCTCCCTGGAATTATCGGTCGGTTGGGGCCAGATAATTT
GGACAACCTGAGGAAGTTGGCGGAGCAGTTTCAGAAGCAAGCACCTAATG
CAGGAACTGGTGCACCCACGACTCAAGAGGACGACGACGATGAGGTCCCA
GAGCTTGTGGCAGGCGAGACGTTTGAAGCTGCCGCAGAGGAGAAAACATA
TAAACCTGACGCTGCTTCTTAGAGAGTTTTATCTAGAGGGACTTTGTGTT
ATTCTATATATTTTCTATGTTTTTTGAGTTTTTATTTTACTTTTCCGAGT
CAACTTTCTCTTGTTCTATCTGATTCTCCCTGTGACACTAGATATTGTTA
C
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