CF836440

Overview
NameCF836440
Unique NameCF836440
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length701
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1053 contig Csv1_Contig1053:59..759. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836440 vs. ExPASy Swiss-Prot
Match: NACB_DICDI (Nascent polypeptide-associated complex subunit beta OS=Dictyostelium discoideum GN=nacB PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.006e-20
Identity = 62/147 (42.18%), Postives = 92/147 (62.59%), Query Frame = 3
Query:   81 VEKLMKMAGA-VLTGGNGSVRRKKKAVHNTTTT-DDHRLHSTLNRIGVNAIPAIEEVNIFK-DDVVIHFLNPKVQSSIAANTWVVSGAPQTKKLQDILPGIIGRLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELVA 512
            + +L K+A   V TGG GS+RRK++  H +TT+ DD +LH  L  +GV  I A+EE N FK D  +IHF NP VQ+  A+ T+V+SG  +TK +  I P +I +LG +NL+ ++K+A+ F   A NA T          D++P+LV+
Sbjct:    5 IARLNKLAEERVRTGGKGSMRRKQQVTHKSTTSVDDKKLHVKLANLGVKPIGAVEEANFFKADGNIIHFKNPSVQT--ASKTFVISGKNETKPMASI-PHVIAQLGAENLNQIKKMADAF-SAAKNANT----------DDIPDLVS 137          
BLAST of CF836440 vs. ExPASy Swiss-Prot
Match: NACB1_YEAST (Nascent polypeptide-associated complex subunit beta-1 OS=Saccharomyces cerevisiae GN=EGD1 PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 2.896e-19
Identity = 59/152 (38.82%), Postives = 77/152 (50.66%), Query Frame = 3
Query:   87 KLMKMAGAVLTGGNGSVRRKKKAVHNTTTTDDHRLHSTLNRIGVNAIPAIEEVNIFKDD-VVIHFLNPKVQSSIAANTWVVSGAPQTKKLQDILPGIIGRLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELVAGETFEAAAE 539
            KL K++     GG      KK         DD +L S L ++    I  + E N FKDD  V+HF    VQ +   NT V  G PQ K LQD+ PGII +LGP+ +  L +LA Q +K        AP   E  D+ +PELV G+TF+A  E
Sbjct:   10 KLQKLSANNKVGGTRRKLNKKAGSSAGANKDDTKLQSQLAKLHAVTIDNVAEANFFKDDGKVMHFNKVGVQVAAQHNTSVFYGLPQEKNLQDLFPGIISQLGPEAIQALSQLAAQMEKHEAK----APADAEKKDEAIPELVEGQTFDADVE 157          
BLAST of CF836440 vs. ExPASy Swiss-Prot
Match: NACB1_YEAS7 (Nascent polypeptide-associated complex subunit beta-1 OS=Saccharomyces cerevisiae (strain YJM789) GN=EGD1 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.896e-19
Identity = 59/152 (38.82%), Postives = 77/152 (50.66%), Query Frame = 3
Query:   87 KLMKMAGAVLTGGNGSVRRKKKAVHNTTTTDDHRLHSTLNRIGVNAIPAIEEVNIFKDD-VVIHFLNPKVQSSIAANTWVVSGAPQTKKLQDILPGIIGRLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELVAGETFEAAAE 539
            KL K++     GG      KK         DD +L S L ++    I  + E N FKDD  V+HF    VQ +   NT V  G PQ K LQD+ PGII +LGP+ +  L +LA Q +K        AP   E  D+ +PELV G+TF+A  E
Sbjct:   10 KLQKLSANNKVGGTRRKLNKKAGSSAGANKDDTKLQSQLAKLHAVTIDNVAEANFFKDDGKVMHFNKVGVQVAAQHNTSVFYGLPQEKNLQDLFPGIISQLGPEAIQALSQLAAQMEKHEAK----APADAEKKDEAIPELVEGQTFDADVE 157          
BLAST of CF836440 vs. ExPASy Swiss-Prot
Match: NACB_YARLI (Nascent polypeptide-associated complex subunit beta OS=Yarrowia lipolytica GN=EGD1 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.940e-19
Identity = 59/155 (38.06%), Postives = 87/155 (56.13%), Query Frame = 3
Query:   90 LMKMAGAVLTGGNGSVRRK-KKAVHNTTTTDDHRLHSTLNRIGVNAIPAIEEVNIFKDD-VVIHFLNPKVQSSIAANTWVVSGAPQTKKLQDILPGIIGRLGPDNLDNLRKLAEQF---QKQAPNAGTGAPTTQEDDDDEVPELVAGETFEAAAE 539
            L K +GA  +GG G+ RR  KK      + D+ +L +TL +     I  I EVN+FK+D  V+HF    V+ S+A+NT+ +SG  Q K + +++P I+ ++G D L  L++ A QF   Q+QA     G    +E  DDE+P LV  E FE   E
Sbjct:   11 LQKKSGAQ-SGGKGTPRRPGKKVAGRNISEDEKKLSATLKKFNAQEITGISEVNMFKEDGTVLHFPKVHVEGSVASNTFAISGPSQQKDIAELIPDILPQMGQDALLQLQQAAVQFSKLQEQAKKTAGGPDAAKEAGDDEIPNLV--ENFEDNVE 162          
BLAST of CF836440 vs. ExPASy Swiss-Prot
Match: NACB_ASHGO (Nascent polypeptide-associated complex subunit beta OS=Ashbya gossypii GN=EGD1 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.427e-19
Identity = 61/160 (38.12%), Postives = 86/160 (53.75%), Query Frame = 3
Query:   84 EKLMKMAGAVLTGGNGSVRRK--KKAVHNTTTTDDHRLHSTLNRIGVNAIPAIEEVNIFKDD-VVIHFLNPKVQSSIAANTWVVSGAPQTKKLQDILPGIIGRLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQ-----EDDDDEVPELVAGETFEAAAE 539
            EKL K+         G  RRK  KK+   +   DD +L + L ++    +  +EE N FKDD  V+HF    VQ +   NT V  G PQ K LQD+ P II +LG +++D L +LA Q Q    NA   AP T+     E  D+++PEL+ G++F+A  E
Sbjct:    6 EKLAKLQKLSANNKVGGTRRKLAKKSGTASANKDDSKLQAQLAKLKAVTMDQVEEANFFKDDGSVLHFNKVGVQVAPQHNTSVFYGIPQEKSLQDLFPSIIPQLGSESIDALTQLATQLQ----NAQAAAPATEGHEAGEKKDNDIPELIEGQSFDADVE 161          
BLAST of CF836440 vs. ExPASy Swiss-Prot
Match: NACB_SCHPO (Nascent polypeptide-associated complex subunit beta OS=Schizosaccharomyces pombe GN=btf3 PE=2 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.877e-18
Identity = 54/148 (36.49%), Postives = 82/148 (55.41%), Query Frame = 3
Query:   75 MNVEKLMKMAGAVLTGGNGSVRRKKKAVHNT--TTTDDHRLHSTLNRIGVNAIPAIEEVNIFKDDV-VIHFLNPKVQSSIAANTWVVSGAPQTKKLQDILPGIIGRLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELV 509
            M+  KL K+      GG G+ RRK K    +  +  DD ++   L ++ +  +  I+EVN+FK+D  VI+F  P V SS+   T  + G  + K L +ILPGI+  LGP++L  LR++AEQ +      G  A    + DD E+P+LV
Sbjct:    1 MDPSKLAKLQAGARIGGKGTPRRKVKKPSKSAMSAADDKKVQGALKKLNMQNLAGIQEVNMFKEDGGVINFRAPTVHSSLPNETTAIYGKAEEKTLSEILPGILNNLGPESLTALRQMAEQLKVSEGEKGADA----QADDGEIPDLV 144          
BLAST of CF836440 vs. ExPASy Swiss-Prot
Match: NACB_CANGA (Nascent polypeptide-associated complex subunit beta OS=Candida glabrata GN=EGD1 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.134e-18
Identity = 56/152 (36.84%), Postives = 78/152 (51.32%), Query Frame = 3
Query:   87 KLMKMAGAVLTGGNGSVRRKKKAVHNTTTTDDHRLHSTLNRIGVNAIPAIEEVNIFKDD-VVIHFLNPKVQSSIAANTWVVSGAPQTKKLQDILPGIIGRLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELVAGETFEAAAE 539
            KL KM+     GG    + KK    +    DD +LH+ L ++    I  + E N FKDD  V+HF    VQ +   NT V  G  Q K LQ++ PGII +LG + +  L +LA Q +K   N   G     E  D+ +PELV G++F+A  E
Sbjct:   10 KLQKMSAGNKVGGTRRKQAKKTGSGSAGNKDDTKLHNQLAKLHAVTIDNVAEANFFKDDGKVLHFNKVGVQVAPQHNTSVFYGMAQEKNLQELFPGIISQLGGEAIQALSQLAAQMEKAQANENAG-----EAKDEAIPELVEGQSFDAEVE 156          
BLAST of CF836440 vs. ExPASy Swiss-Prot
Match: NACB_KLULA (Nascent polypeptide-associated complex subunit beta OS=Kluyveromyces lactis GN=EGD1 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.317e-18
Identity = 56/154 (36.36%), Postives = 80/154 (51.95%), Query Frame = 3
Query:   84 EKLMKMAGAVLTGGNGSVRRKKKAVHNTTTTDDHRLHSTLNRIGVNAIPAIEEVNIFKDD-VVIHFLNPKVQSSIAANTWVVSGAPQTKKLQDILPGIIGRLGPDNLDNLRKLAEQFQK-QAPNAGTGAPTTQEDDDDEVPELVAGETFEAAAE 539
            EKL K+         G  RRK      +++ DD +L   L ++    +  +++ N FKDD  V+HF    VQ +   NT V  G PQ K LQ++ P II ++G D ++ L ++A Q Q  Q  N    AP  +  D D +PELV G+TFEA  E
Sbjct:    6 EKLAKLQKLSANNKVGGTRRKFAKKSGSSSKDDSKLQDQLQKLRAVTVDNVQQANFFKDDGTVLHFNKVGVQVAPQHNTSVFYGIPQEKSLQELFPDIIPQMGADAINALTQMASQLQSAQGANQQAAAPEAEGKDID-IPELVEGQTFEADVE 158          
BLAST of CF836440 vs. ExPASy Swiss-Prot
Match: NACB_PICST (Nascent polypeptide-associated complex subunit beta OS=Pichia stipitis GN=EGD1 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.540e-17
Identity = 56/151 (37.09%), Postives = 82/151 (54.30%), Query Frame = 3
Query:   84 EKLMKMAGAVLTGGNGSVRRKKKAVHNTTTTDDHRLHSTLNRIGVNAIPAIEEVNIFKDD-VVIHFLNPKVQSSIAANTWVVSGAPQTKKLQDILPGIIGRLGPDNLDNLRKLAEQFQ--KQAPNAGTGAPTTQEDDDDEVPELVAGETFE 527
            EKL K+  A      GS  + KK V   T  DD +L   L ++    I  +EE N F++D  V+HF    VQ + A+NT+  +G PQ K +  ++P I+ +LG +NL+ LR+LAEQ Q  K       GAP      D+ +P+L+ GE F+
Sbjct:    6 EKLAKLQKAAAKKVGGSRVKAKKVVK--TEQDDTKLIEALGKLKATKIENVEEANFFREDGKVLHFNRVGVQGAAASNTFAFTGYPQEKNVTQLIPQILPQLGAENLEILRQLAEQLQAGKAPTELNAGAPA---GGDEGIPDLIDGEKFD 151          
BLAST of CF836440 vs. ExPASy Swiss-Prot
Match: NACB_LODEL (Nascent polypeptide-associated complex subunit beta OS=Lodderomyces elongisporus GN=EGD1 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.887e-17
Identity = 56/146 (38.36%), Postives = 82/146 (56.16%), Query Frame = 3
Query:   84 EKLMKMAGAVLTGGNGSVRRKKKAVHNTTTTDDHRLHSTLNRIGVNAIPAIEEVNIFKDD-VVIHFLNPKVQSSIAANTWVVSGAPQTKKLQDILPGIIGRLGPDNLDNLRKLAEQFQ--KQAPNAG-TGAPTTQEDDDDEVPELV 509
            EKL K+  +      GS  + KK V   T  DD +L  TL ++    I  +EE N FKDD  V+HF    VQ + AANT+  +G PQ K +  ++P I+ +LG +NL+ LR+LAEQ Q  K   + G  G     E+ ++++P+LV
Sbjct:    6 EKLAKLQKSTAKKVGGSRVKAKKGVK--TEQDDTKLIETLGKLKATKIEGVEEANFFKDDGKVLHFNRVGVQGAPAANTFAFTGYPQEKNITQLIPQILPQLGAENLEILRQLAEQIQAGKNPKDFGAAGEAGATEEANEDIPDLV 149          
The following BLAST results are available for this feature:
BLAST of CF836440 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
NACB_DICDI2.006e-2042.18Nascent polypeptide-associated complex subunit bet... [more]
NACB1_YEAST2.896e-1938.82Nascent polypeptide-associated complex subunit bet... [more]
NACB1_YEAS72.896e-1938.82Nascent polypeptide-associated complex subunit bet... [more]
NACB_YARLI4.940e-1938.06Nascent polypeptide-associated complex subunit bet... [more]
NACB_ASHGO8.427e-1938.13Nascent polypeptide-associated complex subunit bet... [more]
NACB_SCHPO1.877e-1836.49Nascent polypeptide-associated complex subunit bet... [more]
NACB_CANGA7.134e-1836.84Nascent polypeptide-associated complex subunit bet... [more]
NACB_KLULA9.317e-1836.36Nascent polypeptide-associated complex subunit bet... [more]
NACB_PICST3.540e-1737.09Nascent polypeptide-associated complex subunit bet... [more]
NACB_LODEL7.887e-1738.36Nascent polypeptide-associated complex subunit bet... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02P14_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02P14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836440 ID=CF836440; Name=CF836440; organism=Citrus sinensis; type=EST; length=701bp
AGAGAACACCTTTAGGGCTCTTATCTTCTTCTTCACCAAATTCTTTGTCC
CCTCACAAAAACCCTAGCTCCAAGATGAATGTGGAGAAGCTAATGAAGAT
GGCCGGTGCAGTTCTCACCGGTGGTAATGGTAGTGTGAGAAGAAAGAAGA
AGGCTGTTCATAATACAACAACCACCGATGACCATAGGCTTCATAGCACC
TTGAATAGAATAGGAGTGAATGCTATTCCTGCAATTGAGGAAGTTAACAT
TTTCAAGGATGACGTCGTTATTCACTTCTTAAATCCCAAAGTACAATCTT
CGATTGCTGCCAACACATGGGTAGTTAGTGGTGCCCCACAAACCAAGAAG
TTGCAGGATATTCTCCCTGGAATTATCGGTCGGTTGGGGCCAGATAATTT
GGACAACCTGAGGAAGTTGGCGGAGCAGTTTCAGAAGCAAGCACCTAATG
CAGGAACTGGTGCACCCACGACTCAAGAGGACGACGACGATGAGGTCCCA
GAGCTTGTGGCAGGCGAGACGTTTGAAGCTGCCGCAGAGGAGAAAACATA
TAAACCTGACGCTGCTTCTTAGAGAGTTTTATCTAGAGGGACTTTGTGTT
ATTCTATATATTTTCTATGTTTTTTGAGTTTTTATTTTACTTTTCCGAGT
CAACTTTCTCTTGTTCTATCTGATTCTCCCTGTGACACTAGATATTGTTA
C
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