CF836440

Overview
NameCF836440
Unique NameCF836440
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length701
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1053 contig Csv1_Contig1053:59..759. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836440 vs. ExPASy Swiss-Prot
Match: NACB_DEBHA (Nascent polypeptide-associated complex subunit beta OS=Debaryomyces hansenii GN=EGD1 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.914e-16
Identity = 55/150 (36.67%), Postives = 81/150 (54.00%), Query Frame = 3
Query:   84 EKLMKMAGAVLTGGNGSVRRKKKAVHNTTTTDDHRLHSTLNRIGVNAIPAIEEVNIFKDD-VVIHFLNPKVQSSIAANTWVVSGAPQTKKLQDILPGIIGRLGPDNLDNLRKLAEQFQK-QAPNAGTGAPTTQEDDDDEVPELVAGETFE 527
            EKL K+  A +    G  R K K  +  T  DD +L   L ++    I  IEE N FK+D  V+HF    VQ +   NT+ ++G PQ K +  ++P I+ +LG +NL+ LRKLAEQ Q  + P    G     E+D   +P+L+ G+ F+
Sbjct:    6 EKLAKLQKASVAKKVGGSRVKAKK-NVKTEQDDTKLIEALGKLKAQKIEGIEEANFFKEDGKVLHFNRVGVQGAAQHNTFALTGYPQEKDVTQLIPQILPQLGAENLEILRKLAEQIQAGKNPELNAGGAEGAEED---IPDLIEGQKFD 151          
BLAST of CF836440 vs. ExPASy Swiss-Prot
Match: NACB_PICGU (Nascent polypeptide-associated complex subunit beta OS=Pichia guilliermondii GN=EGD1 PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.148e-14
Identity = 52/151 (34.44%), Postives = 81/151 (53.64%), Query Frame = 3
Query:   84 EKLMKMA-GAVLTGGNGSVRRKKKAVHNTTTTDDHRLHSTLNRIGVNAIPAIEEVNIFKDD-VVIHFLNPKVQSSIAANTWVVSGAPQTKKLQDILPGIIGRLGPDNLDNLRKLAEQFQK-QAPNAGTGAPTTQEDDDDEVPELVAGETFE 527
            EKL K+  GA    G   V+ KK      +  DD +L   L ++    + A+EE N FK+D  V+HF    VQS+   N    +G PQ K +  ++P I+ +LG +NL+ LR+LAEQ Q  + P+ G          D+++P+L+ G+ F+
Sbjct:    6 EKLAKLQQGAAKKVGGQRVKAKKVK----SEQDDTKLMEALGKLKATKVNAVEEANFFKEDGKVLHFKRVGVQSAAQHNVCAFTGYPQEKDVTQLIPQILPQLGAENLEILRQLAEQIQAGKTPSMG----GENAGADEDIPDLIEGQKFD 148          
BLAST of CF836440 vs. ExPASy Swiss-Prot
Match: NACB_CANAL (Nascent polypeptide-associated complex subunit beta OS=Candida albicans GN=EGD1 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.148e-14
Identity = 51/146 (34.93%), Postives = 80/146 (54.79%), Query Frame = 3
Query:   84 EKLMKMAGAVLTGGNGSVRRKKKAVHNTTTTDDHRLHSTLNRIGVNAIPAIEEVNIFKDD-VVIHFLNPKVQSSIAANTWVVSGAPQTKKLQDILPGIIGRLGPDNLDNLRKLAEQFQ--KQAPNAGTGAPTTQED-DDDEVPELV 509
            EKL K+  +      GS  + KK +   T  DD +L   L ++    I  +EE N F++D  V+HF    VQ + A+NT+  +G PQ K +  ++P I+ +LG +NL+ LR+LAEQ Q  K   +  TG+     D   +++P+LV
Sbjct:    6 EKLAKLQKSSAKKVGGSRVKAKKNIK--TEQDDTKLIEALGKLKATKIEGVEEANFFREDGKVLHFNRVGVQGAPASNTFAFTGYPQEKNITQLIPQILPQLGAENLEILRQLAEQIQAGKTPKDFNTGSANAAADAGGEDIPDLV 149          
The following BLAST results are available for this feature:
BLAST of CF836440 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
NACB_DEBHA3.914e-1636.67Nascent polypeptide-associated complex subunit bet... [more]
NACB_PICGU2.148e-1434.44Nascent polypeptide-associated complex subunit bet... [more]
NACB_CANAL2.148e-1434.93Nascent polypeptide-associated complex subunit bet... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02P14_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02P14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836440 ID=CF836440; Name=CF836440; organism=Citrus sinensis; type=EST; length=701bp
AGAGAACACCTTTAGGGCTCTTATCTTCTTCTTCACCAAATTCTTTGTCC
CCTCACAAAAACCCTAGCTCCAAGATGAATGTGGAGAAGCTAATGAAGAT
GGCCGGTGCAGTTCTCACCGGTGGTAATGGTAGTGTGAGAAGAAAGAAGA
AGGCTGTTCATAATACAACAACCACCGATGACCATAGGCTTCATAGCACC
TTGAATAGAATAGGAGTGAATGCTATTCCTGCAATTGAGGAAGTTAACAT
TTTCAAGGATGACGTCGTTATTCACTTCTTAAATCCCAAAGTACAATCTT
CGATTGCTGCCAACACATGGGTAGTTAGTGGTGCCCCACAAACCAAGAAG
TTGCAGGATATTCTCCCTGGAATTATCGGTCGGTTGGGGCCAGATAATTT
GGACAACCTGAGGAAGTTGGCGGAGCAGTTTCAGAAGCAAGCACCTAATG
CAGGAACTGGTGCACCCACGACTCAAGAGGACGACGACGATGAGGTCCCA
GAGCTTGTGGCAGGCGAGACGTTTGAAGCTGCCGCAGAGGAGAAAACATA
TAAACCTGACGCTGCTTCTTAGAGAGTTTTATCTAGAGGGACTTTGTGTT
ATTCTATATATTTTCTATGTTTTTTGAGTTTTTATTTTACTTTTCCGAGT
CAACTTTCTCTTGTTCTATCTGATTCTCCCTGTGACACTAGATATTGTTA
C
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