CF836446

Overview
NameCF836446
Unique NameCF836446
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length781
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2087 contig Csv1_Contig2087:55..835. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836446 vs. ExPASy Swiss-Prot
Match: UBIQ_HUMAN (Ubiquitin OS=Homo sapiens GN=RPS27A PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.239e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = -2
Query:  460 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 687
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76          

HSP 2 Score: 145.976 bits (367), Expect = 2.239e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = -2
Query:  232 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 459
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76          
BLAST of CF836446 vs. ExPASy Swiss-Prot
Match: UBIQ_HORSE (Ubiquitin OS=Equus caballus GN=UBB PE=3 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 2.239e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = -2
Query:  460 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 687
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76          

HSP 2 Score: 145.976 bits (367), Expect = 2.239e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = -2
Query:  232 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 459
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76          
BLAST of CF836446 vs. ExPASy Swiss-Prot
Match: UBIQ_GORGO (Ubiquitin OS=Gorilla gorilla gorilla GN=UBB PE=3 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 2.239e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = -2
Query:  460 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 687
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76          

HSP 2 Score: 145.976 bits (367), Expect = 2.239e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = -2
Query:  232 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 459
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76          
BLAST of CF836446 vs. ExPASy Swiss-Prot
Match: UBIQ_FELCA (Ubiquitin OS=Felis catus GN=UBA52 PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.239e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = -2
Query:  460 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 687
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76          

HSP 2 Score: 145.976 bits (367), Expect = 2.239e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = -2
Query:  232 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 459
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76          
BLAST of CF836446 vs. ExPASy Swiss-Prot
Match: UBIQ_DROME (Ubiquitin OS=Drosophila melanogaster GN=RpL40 PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.239e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = -2
Query:  460 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 687
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76          

HSP 2 Score: 145.976 bits (367), Expect = 2.239e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = -2
Query:  232 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 459
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76          
BLAST of CF836446 vs. ExPASy Swiss-Prot
Match: UBIQ_CRIGR (Ubiquitin OS=Cricetulus griseus PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.239e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = -2
Query:  460 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 687
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76          

HSP 2 Score: 145.976 bits (367), Expect = 2.239e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = -2
Query:  232 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 459
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76          
BLAST of CF836446 vs. ExPASy Swiss-Prot
Match: UBIQ_CHICK (Ubiquitin OS=Gallus gallus GN=UBA52 PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.239e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = -2
Query:  460 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 687
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76          

HSP 2 Score: 145.976 bits (367), Expect = 2.239e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = -2
Query:  232 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 459
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76          
BLAST of CF836446 vs. ExPASy Swiss-Prot
Match: UBIQ_CERCA (Ubiquitin OS=Ceratitis capitata PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.239e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = -2
Query:  460 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 687
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76          

HSP 2 Score: 145.976 bits (367), Expect = 2.239e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = -2
Query:  232 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 459
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76          
BLAST of CF836446 vs. ExPASy Swiss-Prot
Match: UBIQ_CAVPO (Ubiquitin OS=Cavia porcellus GN=RPS27A PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.239e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = -2
Query:  460 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 687
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76          

HSP 2 Score: 145.976 bits (367), Expect = 2.239e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = -2
Query:  232 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 459
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76          
BLAST of CF836446 vs. ExPASy Swiss-Prot
Match: UBIQ_CANFA (Ubiquitin OS=Canis familiaris GN=UBA52 PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.239e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = -2
Query:  460 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 687
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76          

HSP 2 Score: 145.976 bits (367), Expect = 2.239e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = -2
Query:  232 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 459
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76          
The following BLAST results are available for this feature:
BLAST of CF836446 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 99
Match NameE-valueIdentityDescription
UBIQ_HUMAN2.239e-3496.05Ubiquitin OS=Homo sapiens GN=RPS27A PE=1 SV=1[more]
UBIQ_HORSE2.239e-3496.05Ubiquitin OS=Equus caballus GN=UBB PE=3 SV=2[more]
UBIQ_GORGO2.239e-3496.05Ubiquitin OS=Gorilla gorilla gorilla GN=UBB PE=3 S... [more]
UBIQ_FELCA2.239e-3496.05Ubiquitin OS=Felis catus GN=UBA52 PE=3 SV=1[more]
UBIQ_DROME2.239e-3496.05Ubiquitin OS=Drosophila melanogaster GN=RpL40 PE=1... [more]
UBIQ_CRIGR2.239e-3496.05Ubiquitin OS=Cricetulus griseus PE=3 SV=1[more]
UBIQ_CHICK2.239e-3496.05Ubiquitin OS=Gallus gallus GN=UBA52 PE=3 SV=1[more]
UBIQ_CERCA2.239e-3496.05Ubiquitin OS=Ceratitis capitata PE=1 SV=1[more]
UBIQ_CAVPO2.239e-3496.05Ubiquitin OS=Cavia porcellus GN=RPS27A PE=3 SV=1[more]
UBIQ_CANFA2.239e-3496.05Ubiquitin OS=Canis familiaris GN=UBA52 PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02P18_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02P18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836446 ID=CF836446; Name=CF836446; organism=Citrus sinensis; type=EST; length=781bp
TTTTTTTTTTTTTTTTTACCCACAAGACAATTTATTCATGAATCAGAAAA
CCATAGCCTTATTAGAGGCCATTTCAGAGTACGACAACAGATAACAAAAG
CTTATTATAAGCATACCATAAAACAACATTTTGCAGCTTAATCTAAGTCA
TTAAGGCCACAAACGAAACAGAAAAAAGAAAGCAAACCCAAAGAACACAG
ACACTGGCAGTGGACCAGAGTGCCATTAAAAACCACCACGCAGGCGAAGG
ACAAGATGTAAAGTAGACTCCTTCTGGATATTGTAGTCAGCCAAAGTACG
CCCATCCTCCAGCTGCTTCCCGGCAAAAATCAACCTCTGCTGATCTGGAG
GAATCCCTTCCTTGTCCTGGATTTTAGCCTTCACATTATCAATGGTGTCT
GAACTCTCAACCTCCAGGGTAATGGTTTTTCCCGTCAATGTCTTCACGAA
AATCTGCATTCCTCCACGCAGTCTCAACACCAAATGCAGTGTGGATTCCT
TCTGAATGTTGTAATCTGCAAGGGTCCTCCCATCTTCAAGCTGCTTGCCT
GCAAAAATCAACCTCTGCTGGTCTGGTGGAATGCCCTCCTTATCTTGGAT
CTTGGCCTTCACATTATCAATAGTGTCCGAACTCTCTACCTCCAGAGTGA
TTGTTTTTCCAGTGAGAGTCTTCACAAAAATTTGCATGCCACCACGAAGG
CGGAGAACCAAGTGAAGGGTGGACTCCTTCTGAATGTTATAATCTGCAAG
GGTCCTACCATCTTCAAGCTGCTTGCCAGCA
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