CF836448

Overview
NameCF836448
Unique NameCF836448
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length801
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836448 vs. ExPASy Swiss-Prot
Match: AAPK2_PONAB (5'-AMP-activated protein kinase catalytic subunit alpha-2 OS=Pongo abelii GN=PRKAA2 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.679e-16
Identity = 43/105 (40.95%), Postives = 62/105 (59.05%), Query Frame = -3
Query:  479 GTPAYIAPEVLARKEYDGKSSDVWSCGVTLYVMLVGAYPFEDPEDPRNFRKTIDRIRNVQYFLPDYVRVSADCRHLLSQIFVADPSKRIPIPEIKKHPWFLKNLP 793
            G+P Y APEV++ + Y G   D+WSCGV LY +L G  PF+D   P  F+K    IR   +++P+Y+  S     LL  +   DP KR  I +I++H WF ++LP
Sbjct:  175 GSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPFDDEHVPTLFKK----IRGGVFYIPEYLNRSV--ATLLMHMLQVDPLKRATIKDIREHEWFKQDLP 273          
BLAST of CF836448 vs. ExPASy Swiss-Prot
Match: AAPK2_PIG (5'-AMP-activated protein kinase catalytic subunit alpha-2 OS=Sus scrofa GN=PRKAA2 PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.679e-16
Identity = 43/105 (40.95%), Postives = 62/105 (59.05%), Query Frame = -3
Query:  479 GTPAYIAPEVLARKEYDGKSSDVWSCGVTLYVMLVGAYPFEDPEDPRNFRKTIDRIRNVQYFLPDYVRVSADCRHLLSQIFVADPSKRIPIPEIKKHPWFLKNLP 793
            G+P Y APEV++ + Y G   D+WSCGV LY +L G  PF+D   P  F+K    IR   +++P+Y+  S     LL  +   DP KR  I +I++H WF ++LP
Sbjct:  175 GSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPFDDEHVPTLFKK----IRGGVFYIPEYLNRSV--ATLLMHMLQVDPLKRATIKDIREHEWFKQDLP 273          
BLAST of CF836448 vs. ExPASy Swiss-Prot
Match: AAPK2_HUMAN (5'-AMP-activated protein kinase catalytic subunit alpha-2 OS=Homo sapiens GN=PRKAA2 PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.679e-16
Identity = 43/105 (40.95%), Postives = 62/105 (59.05%), Query Frame = -3
Query:  479 GTPAYIAPEVLARKEYDGKSSDVWSCGVTLYVMLVGAYPFEDPEDPRNFRKTIDRIRNVQYFLPDYVRVSADCRHLLSQIFVADPSKRIPIPEIKKHPWFLKNLP 793
            G+P Y APEV++ + Y G   D+WSCGV LY +L G  PF+D   P  F+K    IR   +++P+Y+  S     LL  +   DP KR  I +I++H WF ++LP
Sbjct:  175 GSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPFDDEHVPTLFKK----IRGGVFYIPEYLNRSV--ATLLMHMLQVDPLKRATIKDIREHEWFKQDLP 273          
BLAST of CF836448 vs. ExPASy Swiss-Prot
Match: TRIB1_MOUSE (Tribbles homolog 1 OS=Mus musculus GN=Trib1 PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 2.193e-16
Identity = 44/101 (43.56%), Postives = 61/101 (60.40%), Query Frame = -3
Query:  494 GTPAYIAPEVL-ARKEYDGKSSDVWSCGVTLYVMLVGAYPFEDPEDPRNFRKTIDRIRNVQYFLPDYVRVSADCRHLLSQIFVADPSKRIPIPEIKKHPWF 793
            G PAY++PE+L     Y GK++DVWS GV LY +LVG YPF D +    F K    IR  Q+ +P++V   A C  L+  +   +PS+R+  P+I  HPWF
Sbjct:  244 GCPAYVSPEILNTTGTYSGKAADVWSLGVMLYTLLVGRYPFHDSDPSALFSK----IRRGQFCIPEHVSPKARC--LIRSLLRREPSERLTAPQILLHPWF 338          
BLAST of CF836448 vs. ExPASy Swiss-Prot
Match: CIPKC_ARATH (CBL-interacting serine/threonine-protein kinase 12 OS=Arabidopsis thaliana GN=CIPK12 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.193e-16
Identity = 44/102 (43.14%), Postives = 59/102 (57.84%), Query Frame = -3
Query:  488 GTPAYIAPEVLARKEYDGKSSDVWSCGVTLYVMLVGAYPFEDPEDPRNFRKTIDRIRNVQYFLPDYVRVSADCRHLLSQIFVADPSKRIPIPEIKKHPWFLK 793
            GTPAY+APEVLARK YD    D+WSCGV L+V++ G  PF D    RN      +I   ++  P +   S +   LLS++   +P KR   PEI ++ WF K
Sbjct:  187 GTPAYVAPEVLARKGYDAAKVDIWSCGVILFVLMAGYLPFHD----RNVMAMYKKIYRGEFRCPRW--FSTELTRLLSKLLETNPEKRFTFPEIMENSWFKK 282          
BLAST of CF836448 vs. ExPASy Swiss-Prot
Match: AAPK2_RAT (5'-AMP-activated protein kinase catalytic subunit alpha-2 OS=Rattus norvegicus GN=Prkaa2 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.193e-16
Identity = 43/105 (40.95%), Postives = 62/105 (59.05%), Query Frame = -3
Query:  479 GTPAYIAPEVLARKEYDGKSSDVWSCGVTLYVMLVGAYPFEDPEDPRNFRKTIDRIRNVQYFLPDYVRVSADCRHLLSQIFVADPSKRIPIPEIKKHPWFLKNLP 793
            G+P Y APEV++ + Y G   D+WSCGV LY +L G  PF+D   P  F+K    IR   +++P+Y+  S     LL  +   DP KR  I +I++H WF ++LP
Sbjct:  175 GSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPFDDEHVPTLFKK----IRGGVFYIPEYLNRS--IATLLMHMLQVDPLKRATIKDIREHEWFKQDLP 273          
BLAST of CF836448 vs. ExPASy Swiss-Prot
Match: MRKA_DICDI (Probable serine/threonine-protein kinase MARK-A OS=Dictyostelium discoideum GN=mrkA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.740e-16
Identity = 41/99 (41.41%), Postives = 61/99 (61.62%), Query Frame = -3
Query:  497 GTPAYIAPEVLARKEYDGKSSDVWSCGVTLYVMLVGAYPFEDPEDPRNFRKTIDRIRNVQYFLPDYVRVSADCRHLLSQIFVADPSKRIPIPEIKKHPW 793
            G+P Y +PE++ RKEY+G S DVWS GV L+V++ G  PF    D  N+ +   +I    Y +P Y  ++ +C+ L+S++ V DP KR  + EI  HPW
Sbjct:  268 GSPTYASPELILRKEYNGPSVDVWSMGVVLFVLVTGYLPF----DGDNYVELFQKILAGNYTIPSY--LTHECKSLISRMLVVDPDKRATMEEIINHPW 360          
BLAST of CF836448 vs. ExPASy Swiss-Prot
Match: CIPKX_ORYSJ (CBL-interacting protein kinase 33 OS=Oryza sativa subsp. japonica GN=CIPK33 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.740e-16
Identity = 45/104 (43.27%), Postives = 60/104 (57.69%), Query Frame = -3
Query:  488 TVGTPAYIAPEVLARKEYDGKSSDVWSCGVTLYVMLVGAYPFEDPEDPRNFRKTIDRIRNVQYFLPDYVRVSADCRHLLSQIFVADPSKRIPIPEIKKHPWFLK 799
            T GTP Y+APEVL  + YDG  +D+WSCGV L+V+L G  PFED     N      +I N ++  P +   S   + LL++I   +P  RI IPEI +  WF K
Sbjct:  173 TCGTPNYVAPEVLEDQGYDGAMADLWSCGVILFVLLAGYLPFED----SNLMTLYKKISNAEFTFPPW--TSFPAKRLLTRILDPNPMTRITIPEILEDEWFKK 270          
BLAST of CF836448 vs. ExPASy Swiss-Prot
Match: CIPKS_ORYSJ (CBL-interacting protein kinase 28 OS=Oryza sativa subsp. japonica GN=CIPK28 PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 3.740e-16
Identity = 45/102 (44.12%), Postives = 60/102 (58.82%), Query Frame = -3
Query:  488 GTPAYIAPEVLARKEYDGKSSDVWSCGVTLYVMLVGAYPFEDPEDPRNFRKTIDRIRNVQYFLPDYVRVSADCRHLLSQIFVADPSKRIPIPEIKKHPWFLK 793
            GTPAY+APEVL+RK Y G  +DVWSCGV L+V++    PF D    RN  +   +I   +Y  P +   SA+ + LL  I   DPS R+ I  IK+  W+ K
Sbjct:  172 GTPAYVAPEVLSRKGYSGSKADVWSCGVILFVLVANYLPFHD----RNIIQMYRKIAKAEYRCPRH--FSAELKELLYGILDPDPSTRMSISRIKRSAWYRK 267          
BLAST of CF836448 vs. ExPASy Swiss-Prot
Match: SIK1_RAT (Serine/threonine-protein kinase SIK1 OS=Rattus norvegicus GN=Sik1 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.884e-16
Identity = 39/99 (39.39%), Postives = 60/99 (60.61%), Query Frame = -3
Query:  497 GTPAYIAPEVLARKEYDGKSSDVWSCGVTLYVMLVGAYPFEDPEDPRNFRKTIDRIRNVQYFLPDYVRVSADCRHLLSQIFVADPSKRIPIPEIKKHPW 793
            G+P Y APEV   KEY+G   D+WS GV LYV++ G+ PF+ P  P   ++ ++    + +F+      S DC  L+ ++ V DP+KRI I +I++H W
Sbjct:  185 GSPPYAAPEVFEGKEYEGPQLDIWSLGVVLYVLVCGSLPFDGPNLPTLRQRVLEGRFRIPFFM------SQDCETLIRRMLVVDPAKRITIAQIRQHRW 277          
The following BLAST results are available for this feature:
BLAST of CF836448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 270
Match NameE-valueIdentityDescription
AAPK2_PONAB1.679e-1640.955'-AMP-activated protein kinase catalytic subunit ... [more]
AAPK2_PIG1.679e-1640.955'-AMP-activated protein kinase catalytic subunit ... [more]
AAPK2_HUMAN1.679e-1640.955'-AMP-activated protein kinase catalytic subunit ... [more]
TRIB1_MOUSE2.193e-1643.56Tribbles homolog 1 OS=Mus musculus GN=Trib1 PE=2 S... [more]
CIPKC_ARATH2.193e-1643.14CBL-interacting serine/threonine-protein kinase 12... [more]
AAPK2_RAT2.193e-1640.955'-AMP-activated protein kinase catalytic subunit ... [more]
MRKA_DICDI3.740e-1641.41Probable serine/threonine-protein kinase MARK-A OS... [more]
CIPKX_ORYSJ3.740e-1643.27CBL-interacting protein kinase 33 OS=Oryza sativa ... [more]
CIPKS_ORYSJ3.740e-1644.12CBL-interacting protein kinase 28 OS=Oryza sativa ... [more]
SIK1_RAT4.884e-1639.39Serine/threonine-protein kinase SIK1 OS=Rattus nor... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02P19_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02P19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836448 ID=CF836448; Name=CF836448; organism=Citrus sinensis; type=EST; length=801bp
TTTTTTTTTTTTTTTTTAAAATCCAAGTCCAATAATTGGACAATAAAAAA
GTGTCAAATATACAGTCAACAGATTCTTGTTCCTCGGTTGGCACTTGGAA
CCACCAACTGTTTCTGTGGTGATCCAGGTAAATACCATCCAATACGAAAT
TACTTTACATATTATAATAAGTGCCTTATTAACCTTCAATGACAGGAACA
GCTAAAAGCTTGAAAAACAAGCTCTCTCCATGTGATTTCTATTGCCATAC
TCACGGATCATGGCTCATATAATCACCGCTGGCATCAATCTCAAATTCTA
TGTCACCCTCCATGTCATCAGGGTCCGATGCCCCAGCAGCACCTTGCCCG
GCAACTTTCGTTGCTTCACCCGGCATCTTTGCCTCTTGTATGATACGCAT
TATTTCTTCAACACTCTGAGTTGGTTGGTCACGTCCTGCTTCCTTGTAAT
TTGTTTTCTCTATTTCAATTATCTCTTTCGGCAAATTCTTCAGGAACCAA
GGATGCTTTTTGATCTCTGGAATGGGGATCCTCTTTGAGGGATCAGCAAC
AAAAATCTGAGAAAGCAGATGCCTGCAATCCGCAGATACGCGTACATAGT
CGGGCAAGAAGTACTGAACATTCCTTATTCTATCAATTGTCTTGCGGAAG
TTTCTTGGATCTTCAGGATCCTCAAATGGATATGCACCCACCAACATCAC
ATACAGTGTCACTCCACAGGACCAAACATCTGAACTCTTGCCATCATATT
CCTTTCTTGCTAGGACCTCAGGGGCAATGTATGCTGGAGTACCAACTGTT
G
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