CF836453

Overview
NameCF836453
Unique NameCF836453
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length759
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836453 vs. ExPASy Swiss-Prot
Match: UGDH_CAEEL (UDP-glucose 6-dehydrogenase OS=Caenorhabditis elegans GN=sqv-4 PE=1 SV=1)

HSP 1 Score: 299.286 bits (765), Expect = 1.512e-80
Identity = 148/239 (61.92%), Postives = 186/239 (77.82%), Query Frame = 2
Query:   50 YRKMVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTH---NSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAM 757
            + K+ K+ C+GAGYVGGPT A+IA KCP I V VVD++ ++I  WNSD+LPIYEPGLD +V   RG+NLFFS+D+ K ++EAD++F+SVNTPTK  G G G A DL Y ES +R IA  +   KIVVEKSTVPVK AE+I  IL     N++ +KFQ+LSNPEFLAEGTA++DL NPDRVLIGG  +PEG +AV  L  +Y +WVP +RI+TTN WS+ELSKL ANAFLAQRISS+N++
Sbjct:    6 FGKVSKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFAARGRNLFFSSDIPKAIAEADLIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGGPKIVVEKSTVPVKAAESIGCILREAQKNNENLKFQVLSNPEFLAEGTAMKDLANPDRVLIGGESSPEGLQAVAELVRIYENWVPRNRIITTNTWSSELSKLVANAFLAQRISSINSI 244          
BLAST of CF836453 vs. ExPASy Swiss-Prot
Match: TUAD_BACSU (UDP-glucose 6-dehydrogenase tuaD OS=Bacillus subtilis GN=tuaD PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 5.271e-33
Identity = 94/236 (39.83%), Postives = 131/236 (55.51%), Query Frame = 2
Query:   59 MVKICCIGAGYVG---GPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGL-DGVVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKG-IKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVN 751
            M KI  IG GYVG   G   A I  K     V   DI  S+I +  +  +PIYEPGL D V K    + L F+ D+   +  +DI++++V TP    G      ADLTY ++AA+ I +     K++V KSTVPV T + ++ I+   SKG   F ++SNPEFL EG+AI D  N +R +IG        KA   ++++  H      ++ TNL SAE+ K AANAFLA +IS +N
Sbjct:    1 MKKIAVIGTGYVGLVSGTCFAEIGNK-----VVCCDIDESKIRSLKNGVIPIYEPGLADLVEKNVLDQRLTFTNDIPSAIRASDIIYIAVGTPMSKTG-----EADLTYVKAAAKTIGEHLNGYKVIVNKSTVPVGTGKLVQSIVQKASKGRYSFDVVSNPEFLREGSAIHDTMNMERAVIGS----TSHKAAAIIEEL--HQPFHAPVIKTNLESAEMIKYAANAFLATKISFIN 220          
BLAST of CF836453 vs. ExPASy Swiss-Prot
Match: UDG_PSEAE (UDP-glucose 6-dehydrogenase OS=Pseudomonas aeruginosa GN=udg PE=3 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 2.616e-32
Identity = 90/238 (37.82%), Postives = 134/238 (56.30%), Query Frame = 2
Query:   62 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVK-QCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKI----LTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWV-PEDRILTTNLWSAELSKLAANAFLAQRISSVNAM 757
            +++C IGAGYVG  T A  A      +V  V+    R+      ++PIYEPGL+ +++ Q     L F+  + + +++A++VF++V TP    G     +ADL++  + A  +    +   IVV KSTVPV TAE +E+I    L    K  +  + SNPEFL EG+A+ D   PDRV+IG  ET  G+     L+ +YA ++   +R+L      AE SK AANAFLA +IS +N M
Sbjct:    1 MRLCVIGAGYVGLVTAACFAEM--GNQVRCVERDRERVARLRRGEMPIYEPGLESILRDQLDAARLTFTASLAEGLADAEVVFIAVGTPCGEDG-----SADLSHVLAVAEQLGAQLRQACIVVNKSTVPVGTAERVEEIIRLGLARRRKRFRVAVASNPEFLKEGSAVDDFRRPDRVIIGSAETQAGE----TLRQLYAPFLRNHERVLLMGRREAEFSKYAANAFLATKISFMNEM 227          
BLAST of CF836453 vs. ExPASy Swiss-Prot
Match: Y1054_METJA (Uncharacterized protein MJ1054 OS=Methanocaldococcus jannaschii GN=MJ1054 PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 9.940e-32
Identity = 87/235 (37.02%), Postives = 138/235 (58.72%), Query Frame = 2
Query:   62 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIAD-VSKSD-KIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPED-RILTTNLWSAELSKLAANAFLAQRISSVNAM 757
            + I  IG GYVG   +  + L     +V  +DI  S++ A N  + P+YE GL+G++K+   KNL F+T   K + ++D++F+ V TP    G      ADL +  SA   I + + K D K++V KSTVPV T   ++++L    K     ++SNPEFL EG A+ D FNP+RV++ G E    +K ++ +++VY ++  ++   + TN  +AEL K A+NAFLA +IS +N +
Sbjct:    1 MNISVIGTGYVG--LIQAVGLAEFGFDVVGIDIDESKVKALNRGECPLYEEGLEGLLKKHVNKNLTFTTSY-KPIKDSDVIFLCVGTPQDKDG-----NADLRFLFSAVEKIKETIDKEDYKVIVIKSTVPVGTNRRVKELL----KDYNVDVVSNPEFLREGIAVYDFFNPERVIL-GFENLNNKKPIEIMEEVYKYFKDKNIPFVITNWETAELIKYASNAFLATKISFINEL 222          
BLAST of CF836453 vs. ExPASy Swiss-Prot
Match: UDG_RHIME (UDP-glucose 6-dehydrogenase OS=Rhizobium meliloti GN=rkpK PE=3 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 5.454e-30
Identity = 87/232 (37.50%), Postives = 137/232 (59.05%), Query Frame = 2
Query:   62 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVV-KQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAH-WVPEDRILTTNLWSAELSKLAANAFLAQRISSVN 751
            +KI  IGAGYVG   ++ +       +V  VD    +I+A    Q+PI+EPGLD +V        L F+ D++  V+ +D+VF++V TP++    G G A DL+Y  +AAR IA   +   +VV KSTVPV T + +E+I+   +      ++SNPEFL EG AI+D   PDR++I G +  +G +A + + +VY   ++ +  ++ T   ++EL K A NAFLA +I+ +N
Sbjct:    1 MKITMIGAGYVG--LVSGVCFADFGHDVVCVDKDEGKISALKKGQIPIFEPGLDHLVASNVASGRLNFTDDLKTAVAASDVVFIAVGTPSRR---GDGHA-DLSYVYAAAREIAANLQGFTVVVTKSTVPVGTGDEVERIIRETNPAADVTVVSNPEFLREGAAIEDFKRPDRIVI-GVDGSDG-RAREVMTEVYRPLYLNQSPLVFTTRRTSELIKYAGNAFLAMKITFIN 224          
BLAST of CF836453 vs. ExPASy Swiss-Prot
Match: YTCA_BACSU (Putative UDP-glucose 6-dehydrogenase ytcA OS=Bacillus subtilis GN=ytcA PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 9.304e-30
Identity = 86/234 (36.75%), Postives = 129/234 (55.13%), Query Frame = 2
Query:   62 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN--SKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAM 757
            +KIC +GAGYVG    A  AL     ++   D  V +I       +P YEPGL   + +C   NL FS++V+  + E  ++F++V TP ++ G     +AD    +S    +++  +S K ++ KSTVP  T E I K L  +  SK + F I+SNPEFL EG A+ D+ +PD+ +IG +E  E   +   +K +Y H   +   + T+L  AEL K A N FLA +IS +N M
Sbjct:    1 MKICVVGAGYVGLTLSA--ALASIGHDMICTDKDVKKIGQLKKGVIPFYEPGLSDAILRCG--NLSFSSEVKSSMEECPVIFIAVGTPPRSDG-----SADTKALQSVIGDLSEAIRSYKTIITKSTVPPGTNENIAKQLIASGVSKNL-FNIVSNPEFLREGNALYDMLHPDKTVIGVQE--EDHVSAAIVKSIYKH--IDTPFIVTSLAGAELIKYANNFFLAAKISFINEM 220          
BLAST of CF836453 vs. ExPASy Swiss-Prot
Match: YWQF_BACSU (UDP-glucose 6-dehydrogenase ywqF OS=Bacillus subtilis GN=ywqF PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.215e-29
Identity = 86/232 (37.07%), Postives = 132/232 (56.90%), Query Frame = 2
Query:   62 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVV-KQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILT-HNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVN 751
            + I  IG GYVG   +  ++L      V  +DI   +I+       PI+EPGL+ ++ K      L F T  EK +++ADI+F++V TP K+ G      A+L     AA+ IA   K D +VV KSTVPV T + I  ++T H ++ +   + SNPEFL EG+AI D F+ DR++IG  +    +K    L++++  +  +  I  T++ SAE+ K A+NAFLA +IS +N
Sbjct:    1 MNITVIGTGYVG--LVTGVSLSEIGHHVTCIDIDAHKIDEMRKGISPIFEPGLEELMRKNTADGRLNFETSYEKGLAQADIIFIAVGTPQKSDG-----HANLEQITDAAKRIAKHVKRDTVVVTKSTVPVGTNDLINGLITEHLAEPVSISVASNPEFLREGSAIYDTFHGDRIVIGTAD----EKTANTLEELFRPF--QIPIYQTDIRSAEMIKYASNAFLATKISFIN 219          
BLAST of CF836453 vs. ExPASy Swiss-Prot
Match: UDG_RICFE (UDP-glucose 6-dehydrogenase OS=Rickettsia felis GN=udg PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.390e-25
Identity = 79/234 (33.76%), Postives = 126/234 (53.85%), Query Frame = 2
Query:   62 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKN-LFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPED-RILTTNLWSAELSKLAANAFLAQRISSVNAM 757
            + I  IG+GYVG   ++ I +      V  +D    +I+  N   LPIYE  LD  +KQ    N L F+      +  A+ +F++V TP+K  G      ADL Y   A   +++    D ++V KSTVP  +   I   L   SKG  F + SNPEFL EG+A++D   PDR+++G       +++ + L+ +YA  + +  + + T+L ++EL K A+N+FLA +I+ +N M
Sbjct:    1 MNITFIGSGYVG--LVSGIIMGYLGHNVTCLDNDEVKISKLNKQILPIYEAKLDEYLKQALEANRLKFTNIYNNELQNAEAIFITVGTPSKESG-----EADLKYVYDAIDKVSEHINKDCLIVIKSTVPPDSCSNIIAYL--KSKGFSFNVASNPEFLREGSAVEDFLYPDRIVVG----VNNKESEEILRKIYAPLIEQGAKFVVTDLVTSELIKYASNSFLATKIAFINEM 221          
BLAST of CF836453 vs. ExPASy Swiss-Prot
Match: UDG_RICTY (UDP-glucose 6-dehydrogenase OS=Rickettsia typhi GN=udg PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 9.011e-25
Identity = 81/234 (34.62%), Postives = 120/234 (51.28%), Query Frame = 2
Query:   62 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC-RGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPED-RILTTNLWSAELSKLAANAFLAQRISSVNAM 757
            + I  IG+GYVG   ++ I +      V   D    +I+  N   LPIYE  LD  +KQ      L F+          D VF++V TP+K  G      ADL Y   A   ++     D ++V KSTVP  +   I   L   +KG  F + SNPEFL EG+A++D   PDR+++G       Q++   L+ +YA  + +  + L TNL ++EL K A+N+FLA +I+ +N M
Sbjct:    1 MNITFIGSGYVG--LVSGIIMGYLGHNVTCFDNDDVKISKLNKKILPIYEAKLDEYLKQALESDRLKFTNIYSNDFRNVDAVFITVGTPSKELG-----EADLKYVYDAVDKVSKHINKDCLIVIKSTVPPGSCNNIIAYL--KAKGFSFNVASNPEFLREGSAVEDFLYPDRIVVG----VNNQESEALLRTIYAPLIEQGVKFLVTNLVTSELIKYASNSFLATKIAFINEM 221          
BLAST of CF836453 vs. ExPASy Swiss-Prot
Match: UDG_RICCN (UDP-glucose 6-dehydrogenase OS=Rickettsia conorii GN=udg PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.424e-24
Identity = 81/233 (34.76%), Postives = 124/233 (53.22%), Query Frame = 2
Query:   62 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC-RGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAM 757
            + I  IG+GYVG   ++ I +      V  +D    +I+  N   LPIYE  LD  +KQ      L F+      +  AD +F++V TP+K  GLG    ADL Y   A   + +    D ++V KSTVP  +   I   L   S+G  F + SNPEFL EG+A++D   PDR++IG       +++   L+ +YA  +   + + T+L ++EL K A+N+FLA +I+ +N M
Sbjct:    1 MNITFIGSGYVG--LVSGIIMGYLGHNVTCLDNDEVKISKLNKQILPIYEAKLDEYLKQALESDRLKFTNIYNNELQNADAIFITVGTPSK--GLGE---ADLKYVYDAIDKVFEHINKDCLIVIKSTVPPGSCSNIIAYL--KSRGFSFNVASNPEFLREGSAVEDFLYPDRIVIG----VNNKESEAILRKIYAP-LQGVKFVVTDLVTSELIKYASNSFLATKIAFINEM 219          
The following BLAST results are available for this feature:
BLAST of CF836453 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
UGDH_CAEEL1.512e-8061.92UDP-glucose 6-dehydrogenase OS=Caenorhabditis eleg... [more]
TUAD_BACSU5.271e-3339.83UDP-glucose 6-dehydrogenase tuaD OS=Bacillus subti... [more]
UDG_PSEAE2.616e-3237.82UDP-glucose 6-dehydrogenase OS=Pseudomonas aerugin... [more]
Y1054_METJA9.940e-3237.02Uncharacterized protein MJ1054 OS=Methanocaldococc... [more]
UDG_RHIME5.454e-3037.50UDP-glucose 6-dehydrogenase OS=Rhizobium meliloti ... [more]
YTCA_BACSU9.304e-3036.75Putative UDP-glucose 6-dehydrogenase ytcA OS=Bacil... [more]
YWQF_BACSU1.215e-2937.07UDP-glucose 6-dehydrogenase ywqF OS=Bacillus subti... [more]
UDG_RICFE1.390e-2533.76UDP-glucose 6-dehydrogenase OS=Rickettsia felis GN... [more]
UDG_RICTY9.011e-2534.62UDP-glucose 6-dehydrogenase OS=Rickettsia typhi GN... [more]
UDG_RICCN3.424e-2434.76UDP-glucose 6-dehydrogenase OS=Rickettsia conorii ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02P21_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02P21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836453 ID=CF836453; Name=CF836453; organism=Citrus sinensis; type=EST; length=759bp
GTTGTTTTGACTTTTAGAAATCGAAGCTCACTGAGGTTATATTGATTAGT
ACAGGAAAATGGTGAAGATCTGCTGCATCGGTGCTGGGTATGTTGGGGGG
CCGACAATGGCAGTCATTGCACTGAAGTGCCCATCCATTGAAGTGGCTGT
TGTTGATATCTCTGTGTCTCGGATCAATGCCTGGAACAGTGACCAGCTCC
CCATCTATGAGCCTGGACTTGATGGTGTGGTAAAGCAGTGCCGAGGGAAG
AACCTGTTCTTCAGCACCGATGTTGAGAAGCATGTCTCTGAGGCTGATAT
TGTCTTTGTTTCGGTCAATACCCCAACTAAAACTCAGGGTCTTGGTGCTG
GCAAAGCTGCAGATCTGACATACTGGGAGAGCGCTGCTCGTGTGATTGCC
GATGTGTCAAAGTCTGACAAAATTGTTGTTGAGAAATCAACAGTTCCTGT
AAAAACTGCTGAGGCAATTGAAAAAATTTTGACCCACAACAGCAAGGGAA
TCAAATTCCAGATCCTTTCAAACCCGGAGTTTCTTGCTGAGGGAACTGCA
ATACAGGATCTTTTTAACCCAGATCGGGTCCTTATCGGTGGTAGAGAAAC
GCCAGAAGGCCAGAAAGCCGTCAAAGCCTTGAAGGATGTGTATGCACACT
GGGTCCCAGAAGACCGAATTTTGACCACCAACCTCTGGTCTGCAGAGCTT
TCGAAGCTTGCAGCCAATGCTTTCTTGGCACAGAGGATCTCATCTGTTAA
TGCCATGTC
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