CF836487

Overview
NameCF836487
Unique NameCF836487
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836487 vs. ExPASy Swiss-Prot
Match: RL12_HUMAN (60S ribosomal protein L12 OS=Homo sapiens GN=RPL12 PE=1 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 3.703e-62
Identity = 114/164 (69.51%), Postives = 139/164 (84.76%), Query Frame = 1
Query:   76 MPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIP 567
            MPPKFDP+++  VY+R TGGEVGA S+LAPKIGPLGLSPKK+G+DIAK T  DWKGLR+TVKLT+QNRQA++ VVPSA+AL+IKALKEP RDRKK KNIKH+GNIT D+++ IA+ MR RS+A++LSGT+KEILGT  SVGC VDG+ P D+  +I  G VE P
Sbjct:    1 MPPKFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATG-DWKGLRITVKLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRSLARELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSGAVECP 163          
BLAST of CF836487 vs. ExPASy Swiss-Prot
Match: RL12_BOVIN (60S ribosomal protein L12 OS=Bos taurus GN=RPL12 PE=2 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 3.703e-62
Identity = 114/164 (69.51%), Postives = 139/164 (84.76%), Query Frame = 1
Query:   76 MPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIP 567
            MPPKFDP+++  VY+R TGGEVGA S+LAPKIGPLGLSPKK+G+DIAK T  DWKGLR+TVKLT+QNRQA++ VVPSA+AL+IKALKEP RDRKK KNIKH+GNIT D+++ IA+ MR RS+A++LSGT+KEILGT  SVGC VDG+ P D+  +I  G VE P
Sbjct:    1 MPPKFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATG-DWKGLRITVKLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRSLARELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSGAVECP 163          
BLAST of CF836487 vs. ExPASy Swiss-Prot
Match: RL12_CHILA (60S ribosomal protein L12 OS=Chinchilla lanigera GN=RPL12 PE=2 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.838e-61
Identity = 113/164 (68.90%), Postives = 139/164 (84.76%), Query Frame = 1
Query:   76 MPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIP 567
            MPPKFDP+++  VY+R TGGEVGA S+LAPKIGPLGLSPKK+G+DIAK T  DWKGLR+TVKLT+QNRQA++ VVPSA+AL+IKALKEP RDRKK KNIKH+GNIT D+++ IA+ MR RS+A++LSGT+KEILGT  SVGC VD + P D+  +I +G VE P
Sbjct:    1 MPPKFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATG-DWKGLRITVKLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRSLARELSGTIKEILGTAQSVGCNVDNRHPHDIIDDINNGVVECP 163          
BLAST of CF836487 vs. ExPASy Swiss-Prot
Match: RL12_NEUCR (60S ribosomal protein L12 OS=Neurospora crassa GN=rpl-12 PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.720e-59
Identity = 110/164 (67.07%), Postives = 139/164 (84.76%), Query Frame = 1
Query:   76 MPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIP 567
            MPPKFDP++V  + +R TGGEVGA+S+LAPKIGPLGLSPKK+GEDIAK T  DWKGLRVTVKLT+QNRQA V+VVP+A+ALVI+ALKEP RDRKK KNIKHN +++ D+++EIA+ MR +S +K+L GTV E+LGT  SVGC VDGK PK +Q+ I  G++++P
Sbjct:    1 MPPKFDPNEVKVITLRATGGEVGASSALAPKIGPLGLSPKKVGEDIAKATG-DWKGLRVTVKLTIQNRQAAVSVVPTASALVIRALKEPPRDRKKEKNIKHNKSVSFDEIVEIARTMRFKSFSKELKGTVLEVLGTAFSVGCQVDGKSPKAVQEAIHAGEIDVP 163          
BLAST of CF836487 vs. ExPASy Swiss-Prot
Match: RL12_YEAST (60S ribosomal protein L12 OS=Saccharomyces cerevisiae GN=RPL12A PE=1 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.276e-54
Identity = 104/164 (63.41%), Postives = 134/164 (81.71%), Query Frame = 1
Query:   76 MPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIP 567
            MPPKFDP++V  +Y+R  GGEVGA+++LAPKIGPLGLSPKK+GEDIAK T K++KG++VTV+L +QNRQA  +VVPSA++LVI ALKEP RDRKK KN+KH+GNI LD++IEIA+ MR +S  + L+   KEILGT  SVGC VD K+P D+ + I  G++EIP
Sbjct:    1 MPPKFDPNEVKYLYLRAVGGEVGASAALAPKIGPLGLSPKKVGEDIAKAT-KEFKGIKVTVQLKIQNRQAAASVVPSASSLVITALKEPPRDRKKDKNVKHSGNIQLDEIIEIARQMRDKSFGRTLASVTKEILGTAQSVGCRVDFKNPHDIIEGINAGEIEIP 163          
BLAST of CF836487 vs. ExPASy Swiss-Prot
Match: RL12_DICDI (60S ribosomal protein L12 OS=Dictyostelium discoideum GN=rpl12 PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.276e-54
Identity = 104/163 (63.80%), Postives = 133/163 (81.60%), Query Frame = 1
Query:   76 MPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEI 564
            MPPK DPS+ V+V++RV GGE GA S+LAPK+GPLG+SPKK+G+DIAK T + WKG++V+VKLT+QNR A   V+PSA+ALVIKALKEP RDRKK KNIKHNGNI L+++ +IAK MR +S+A D  G+V EILGT  SVGC V+GK P+D+Q  I  G++E+
Sbjct:    1 MPPKVDPSEKVEVFLRVCGGEAGAMSTLAPKLGPLGVSPKKVGDDIAKAT-QPWKGMKVSVKLTIQNRIAVPEVLPSASALVIKALKEPPRDRKKEKNIKHNGNIPLEEICKIAKTMRFKSLAVDFKGSVLEILGTAHSVGCKVNGKSPRDIQAGIQSGEIEV 162          
BLAST of CF836487 vs. ExPASy Swiss-Prot
Match: RL12_ENCCU (60S ribosomal protein L12 OS=Encephalitozoon cuniculi GN=RPL12 PE=1 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 8.876e-40
Identity = 83/153 (54.25%), Postives = 117/153 (76.47%), Query Frame = 1
Query:  112 VYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMR-PRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIP 567
            + ++V GGEV  A+ LA ++GPLGLS K +GEDI K TA D+K L+V V+L +++R+A V V PS A L+IK+LKEP RDRKK KNI HNG++ + +V++IA++ R  RS +  LSGTVKE+LGTC S+GC VDGK PK++ +EI  G++++P
Sbjct:   14 IKLQVVGGEVPGAT-LAQRVGPLGLSSKVVGEDIKKATA-DYKSLKVHVQLAIKDRKATVEVQPSVATLIIKSLKEPPRDRKKEKNILHNGSLRMTEVVDIARIARSSRSYSNSLSGTVKEVLGTCKSIGCKVDGKCPKEVTREIDAGEIKLP 164          
BLAST of CF836487 vs. ExPASy Swiss-Prot
Match: RL11_ARCFU (50S ribosomal protein L11P OS=Archaeoglobus fulgidus GN=rpl11p PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.090e-21
Identity = 62/158 (39.24%), Postives = 98/158 (62.03%), Query Frame = 1
Query:  100 QVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQN-RQAKVAV-VPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIP 567
            QVV+V V   GG+      L P IGPLGL+ K++ + I  E  KD++GL V VK+ V++ R  ++ V +P  +AL+ + L   +      + +   GN+T++ ++ IA++ R +S++  L   VKE+LGTC S+G TV+GK PK+L + I +G VEIP
Sbjct:    3 QVVEVLV--PGGQASPGPPLGPAIGPLGLNVKQVVDKI-NEATKDYEGLSVPVKIIVKDDRSFEIEVGIPPVSALIKRELGIEKGASNPGREVV--GNLTMEQLLNIARIKRQQSLSYTLKEVVKEVLGTCNSMGITVEGKSPKELTRMIEEGQVEIP 155          
BLAST of CF836487 vs. ExPASy Swiss-Prot
Match: RL11_THEON (50S ribosomal protein L11P OS=Thermococcus onnurineus (strain NA1) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.424e-21
Identity = 62/157 (39.49%), Postives = 96/157 (61.15%), Query Frame = 1
Query:  100 QVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKV----AVVPSAAALVIKALKEPERDRKKTKNIKHN--GNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDG 552
            QVV+V V   GG+      L P IGPLGL+ K++ ++I K T KD++G++V VK+ V++ + K       VP  + L+ K L  P    K +    H+  GN+T++ VI IAK    + +A DL    KE++GT +S+G TV+GKDP+++Q+EI +G
Sbjct:    3 QVVEVLVE--GGKASPGPPLGPAIGPLGLNVKQVVDEINKAT-KDFEGMQVPVKIIVEDPKKKTFRIEVGVPPVSQLIKKELGIP----KGSSEAGHSPVGNLTMEQVIRIAKAKMDQMLAADLKAAAKEVIGTALSMGVTVEGKDPREVQKEIDEG 152          
BLAST of CF836487 vs. ExPASy Swiss-Prot
Match: RL11_PYRFU (50S ribosomal protein L11P OS=Pyrococcus furiosus GN=rpl11p PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.410e-21
Identity = 63/158 (39.87%), Postives = 97/158 (61.39%), Query Frame = 1
Query:   94 PSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQ--NRQAKVAV-VPSAAALVIKALKEPERDRKKTKNIKHN--GNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDG 552
            P QVV+V V   GG+      L P IGPLGL+ K++ + I  E  KD+ G++V VK+ V    +Q ++ V VP  + L+ K L       K +   KHN  GN+T++ VI+IAK+ + + +A  L    KE++GT +S+G TV+GKDP+++Q+EI +G
Sbjct:    2 PKQVVEVLVE--GGKATPGPPLGPAIGPLGLNVKQVVDKI-NEATKDFAGMQVPVKIIVDPVTKQFEIEVGVPPTSQLIKKELGL----EKGSGEPKHNIVGNLTMEQVIKIAKMKKDQMLALTLKAAAKEVIGTALSMGVTVEGKDPREVQKEIDEG 152          
The following BLAST results are available for this feature:
BLAST of CF836487 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
RL12_HUMAN3.703e-6269.5160S ribosomal protein L12 OS=Homo sapiens GN=RPL12... [more]
RL12_BOVIN3.703e-6269.5160S ribosomal protein L12 OS=Bos taurus GN=RPL12 P... [more]
RL12_CHILA1.838e-6168.9060S ribosomal protein L12 OS=Chinchilla lanigera G... [more]
RL12_NEUCR1.720e-5967.0760S ribosomal protein L12 OS=Neurospora crassa GN=... [more]
RL12_YEAST1.276e-5463.4160S ribosomal protein L12 OS=Saccharomyces cerevis... [more]
RL12_DICDI1.276e-5463.8060S ribosomal protein L12 OS=Dictyostelium discoid... [more]
RL12_ENCCU8.876e-4054.2560S ribosomal protein L12 OS=Encephalitozoon cunic... [more]
RL11_ARCFU1.090e-2139.2450S ribosomal protein L11P OS=Archaeoglobus fulgid... [more]
RL11_THEON1.424e-2139.4950S ribosomal protein L11P OS=Thermococcus onnurin... [more]
RL11_PYRFU5.410e-2139.8750S ribosomal protein L11P OS=Pyrococcus furiosus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_03A20_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa03A20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836487 ID=CF836487; Name=CF836487; organism=Citrus sinensis; type=EST; length=709bp
AGGGCAAATCGCAAAAGACAGGGCAAGCAAAAAGCACTTCACACACTCTT
TGTAGCCGTAACCAGCAGAGCAATCATGCCGCCGAAGTTCGACCCGAGCC
AAGTGGTGGACGTGTACGTCCGCGTGACCGGTGGCGAGGTGGGAGCCGCC
AGTTCCCTCGCCCCAAAGATCGGTCCCCTCGGTCTCTCCCCCAAGAAAAT
CGGAGAGGACATCGCCAAGGAAACCGCCAAGGACTGGAAGGGCTTACGTG
TCACCGTCAAGCTCACCGTCCAGAACCGTCAGGCCAAGGTCGCCGTCGTT
CCCTCCGCCGCCGCCCTGGTCATTAAAGCCCTCAAGGAACCCGAGAGGGA
CAGGAAGAAGACCAAGAACATCAAGCACAACGGCAACATTACCCTCGATG
ACGTCATCGAAATCGCAAAAGTGATGCGGCCCAGGTCGATGGCTAAGGAT
TTGAGTGGCACCGTTAAGGAGATTTTGGGCACATGCGTTTCTGTTGGGTG
TACGGTCGATGGCAAGGACCCTAAGGACCTGCAGCAGGAGATCACTGATG
GTGATGTCGAAATTCCTCTTGATTGAAGACTCTGTTTGTGAGGGGGTCTA
TTTTAGATTTTAATTTTTGTTTTTTATTTCTATATATCAGTGCCTTTTTT
TTTATTATCAGTTTTGGATCTTTACAAGGATTTTGATGATGTCTCCAATT
ATTCGAGCT
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