CF836487

Overview
NameCF836487
Unique NameCF836487
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836487 vs. ExPASy Swiss-Prot
Match: RL11_PICTO (50S ribosomal protein L11P OS=Picrophilus torridus GN=rpl11p PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.513e-18
Identity = 56/158 (35.44%), Postives = 95/158 (60.13%), Query Frame = 1
Query:  103 VVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAK----VAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEI 564
            +V V   V GG+      L P +GPLGL+  ++ +DI ++T K++ G++V V + V +   K    +  VP  +AL+ K L   +   KK + I   GN TL+ + ++A+  R   ++ ++ G V E+LG+ VS+G TVDG+DPK++Q+ I +G++EI
Sbjct:    1 MVAVKTMVEGGKATTGPPLGPALGPLGLNLGQVVKDINEKT-KNFAGMQVPVTVNVIDPATKKYEIIVGVPPTSALLKKELGIEKGASKKKEKIA--GNATLEQIKKVAESKRSALLSYNMKGAVLEVLGSAVSLGITVDGRDPKEVQKMIKNGEIEI 155          
BLAST of CF836487 vs. ExPASy Swiss-Prot
Match: RL11_METHJ (50S ribosomal protein L11P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.282e-18
Identity = 54/150 (36.00%), Postives = 87/150 (58.00%), Query Frame = 1
Query:  112 VYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQ---AKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDG 552
            V V V GG+  A   L P +GPLG++ K + ++I K+TA  + G++V V++ V  ++     V + P+ A ++ +A  E       TK +   G++ L+  + IAK+     ++ DL   VKE++GTCVS+G TV GK PKD+ +EI  G
Sbjct:    5 VEVLVPGGKATAGPPLGPALGPLGINVKAVVDEINKKTAS-FNGMQVPVRVEVDEKKNFTISVGIPPTTALIMKEAGVEKGSGEPNTKIV---GDVPLEAAVTIAKMKLDDMLSYDLKNAVKEVVGTCVSLGITVSGKKPKDMLKEIDSG 150          
BLAST of CF836487 vs. ExPASy Swiss-Prot
Match: RL11_UNCMA (50S ribosomal protein L11P OS=Uncultured methanogenic archaeon RC-I GN=rpl11p PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.629e-17
Identity = 54/149 (36.24%), Postives = 85/149 (57.05%), Query Frame = 1
Query:  112 VYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQ-NRQAKVAV-VPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDG 552
            V V V GG+      L P +GPLG++ KK+ ++I  +T KD+ G+ V VK+ V  +R   V V  P  +ALV+  LK  +     T N    G++T++  I++A++ R   ++  L   VKE+ GTCVS+G  ++GK PK+   E+  G
Sbjct:    5 VEVLVPGGKANPGPPLGPALGPLGINIKKVVDEINNKT-KDYNGMTVPVKVIVDASRNFTVEVGTPPTSALVLSELKLEKGSG--TPNTNFIGSLTIEQAIKVAQMKRDAMLSYTLKNAVKEVAGTCVSLGVMIEGKKPKEFIAEVNAG 150          
BLAST of CF836487 vs. ExPASy Swiss-Prot
Match: RL11_METTH (50S ribosomal protein L11P OS=Methanobacterium thermoautotrophicum GN=rpl11p PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.629e-17
Identity = 52/150 (34.67%), Postives = 91/150 (60.67%), Query Frame = 1
Query:  112 VYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQN--RQAKVAV-VPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDG 552
            V + + GG+      L P IGPLG++  ++ E+I ++TA D++G++V VK+ V    R  +V V  P   AL++  LK  +  +     +    +I+++ V++IA++     ++ D    VKEI+GTCVS+G TV+GKDP+++Q+E+  G
Sbjct:    6 VEILIDGGKATPGPPLGPAIGPLGINMMQVVEEINRKTA-DFEGMKVPVKIIVDTDTRDFEVEVGTPPTTALIMDELKLEKGSQDP--GMDKIADISMEQVLKIARMKFDALLSNDYKRAVKEIMGTCVSMGITVNGKDPREVQREVDQG 152          
BLAST of CF836487 vs. ExPASy Swiss-Prot
Match: RL11_METM7 (50S ribosomal protein L11P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.629e-17
Identity = 55/157 (35.03%), Postives = 89/157 (56.69%), Query Frame = 1
Query:  100 QVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAV---VPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVE 561
            QVV++ V  +GG+  A   L P IGPLG++  ++ + I  E  KD+ G+ V VK+ V   +    V   +P A+ALV K L      ++    +   GN+T++ V++IAK+ +   +A +L    KE++GTCVSVG  V+G  PK+ Q+ +  G  +
Sbjct:    4 QVVEILV--SGGKATAGPPLGPAIGPLGVNIMQVVQKI-NEMTKDYDGMSVPVKVIVNTDKRTFEVEVGIPPASALVKKELGITTGSQEPKHQVA--GNLTMEQVVKIAKMKQDAMLAYNLKNASKEVIGTCVSVGVNVEGMTPKEAQKAVDAGQFD 155          
BLAST of CF836487 vs. ExPASy Swiss-Prot
Match: RL11_METM6 (50S ribosomal protein L11P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.629e-17
Identity = 55/157 (35.03%), Postives = 89/157 (56.69%), Query Frame = 1
Query:  100 QVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAV---VPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVE 561
            QVV++ V  +GG+  A   L P IGPLG++  ++ + I  E  KD+ G+ V VK+ V   +    V   +P A+ALV K L      ++    +   GN+T++ V++IAK+ +   +A +L    KE++GTCVSVG  V+G  PK+ Q+ +  G  +
Sbjct:    4 QVVEILV--SGGKATAGPPLGPAIGPLGVNIMQVVQKI-NEMTKDYDGMSVPVKVIVNTDKRTFEVEVGIPPASALVKKELGITTGSQEPKHQVA--GNLTMEQVVKIAKMKQDAMLAYNLKNASKEVIGTCVSVGVNVEGMTPKEAQKAVDAGQFD 155          
BLAST of CF836487 vs. ExPASy Swiss-Prot
Match: RL11_METS5 (50S ribosomal protein L11P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.127e-17
Identity = 61/154 (39.61%), Postives = 83/154 (53.90%), Query Frame = 1
Query:  112 VYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAK--ETAKDWKGLRVTVKLTVQNRQAKVAV---VPSAAALVIK--ALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDG 552
            + V V GG V     LAP +  LGL+   +GE + K  E    +KG+ V V L V     K  V   VP+  +L++K      P  D +  K     GNI++DDVIE+A   +P   AK+L G VK ILGT  S+G TVD KDPK + +E+ +G
Sbjct:    6 IKVVVEGGNVKPGPPLAPTLSQLGLN---VGEVVKKINEATSQFKGMTVPVTLDVDTDTKKYEVSVGVPTTTSLLVKKAGASGPSGDPEHKKI----GNISMDDVIEVAISKKPSLTAKELKGAVKSILGTAKSIGLTVDNKDPKLVVREVEEG 152          
BLAST of CF836487 vs. ExPASy Swiss-Prot
Match: RL11_METMJ (50S ribosomal protein L11P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.127e-17
Identity = 53/152 (34.87%), Postives = 89/152 (58.55%), Query Frame = 1
Query:  112 VYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVV--PSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVE 561
            V V V GG+  A   L P +GPLG++ K + +DI K+TA ++ G++V V +TV +++     V  P   ALV+K     +   +    +   G++ L+  + IA++     ++ DL   VKE+LGTCVSVG TV+GK P+++ Q + +G+ +
Sbjct:    5 VEVLVPGGKATAGPPLGPALGPLGINVKAVVDDINKKTA-EFNGMQVPVTVTVDDKKNFTIEVGIPPTTALVMKEAGITKGSTEPGALVA--GDLPLEAAVRIARMKFDGMLSYDLKSAVKEVLGTCVSVGVTVEGKKPREMIQAVNNGEYD 153          
BLAST of CF836487 vs. ExPASy Swiss-Prot
Match: RL11_METPE (50S ribosomal protein L11P OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.629e-17
Identity = 53/156 (33.97%), Postives = 92/156 (58.97%), Query Frame = 1
Query:  112 VYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQ-AKVAV-VPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPLD 573
            V V V GG   A   + P +GPLG++ K + +DI K+TA ++ G++V VK+ V +++   ++V +P   ALV+K +   +   +    I   G++ ++  + IA++     ++ +L   VKE++GTCVSVG TVDGK PK++   I+ G  +  L+
Sbjct:    5 VEVLVPGGRATAGPPIGPALGPLGINVKAVVDDINKKTA-EFNGMQVPVKIEVDDKKNVTISVGIPPTTALVMKEVGIEKGSAEPNSIIV--GDLPIEAAVRIARMKLDDMLSYELKTAVKEVIGTCVSVGVTVDGKKPKEILAAISAGQYDSVLE 157          
BLAST of CF836487 vs. ExPASy Swiss-Prot
Match: RL11_METMP (50S ribosomal protein L11P OS=Methanococcus maripaludis GN=rpl11p PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.740e-17
Identity = 56/159 (35.22%), Postives = 92/159 (57.86%), Query Frame = 1
Query:  100 QVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAV---VPSAAALVIKALKEPERDRKKTKNIKHN--GNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVE 561
            QVV++ V  +GG+  A   L P IGPLG++  ++ + I   T KD++G+ V VK+ V   +    V   +P A+AL+ K +       K ++  KH   GNIT++ +++IAK+ +   +A +L    KE++GTCVSVG +V+G  P + Q+ I  G  +
Sbjct:    4 QVVEILV--SGGKATAGPPLGPAIGPLGVNIMQVVQKINNMT-KDYEGMSVPVKVIVDTDKRTFEVEVGIPPASALIKKEIGI----EKGSQEPKHQVAGNITMEQIVKIAKMKQDAMLAYNLKNASKEVVGTCVSVGISVEGMTPSEAQKAIDAGQFD 155          
The following BLAST results are available for this feature:
BLAST of CF836487 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
RL11_PICTO2.513e-1835.4450S ribosomal protein L11P OS=Picrophilus torridus... [more]
RL11_METHJ3.282e-1836.0050S ribosomal protein L11P OS=Methanospirillum hun... [more]
RL11_UNCMA1.629e-1736.2450S ribosomal protein L11P OS=Uncultured methanoge... [more]
RL11_METTH1.629e-1734.6750S ribosomal protein L11P OS=Methanobacterium the... [more]
RL11_METM71.629e-1735.0350S ribosomal protein L11P OS=Methanococcus maripa... [more]
RL11_METM61.629e-1735.0350S ribosomal protein L11P OS=Methanococcus maripa... [more]
RL11_METS52.127e-1739.6150S ribosomal protein L11P OS=Metallosphaera sedul... [more]
RL11_METMJ2.127e-1734.8750S ribosomal protein L11P OS=Methanoculleus maris... [more]
RL11_METPE3.629e-1733.9750S ribosomal protein L11P OS=Methanosphaerula pal... [more]
RL11_METMP4.740e-1735.2250S ribosomal protein L11P OS=Methanococcus maripa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_03A20_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa03A20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836487 ID=CF836487; Name=CF836487; organism=Citrus sinensis; type=EST; length=709bp
AGGGCAAATCGCAAAAGACAGGGCAAGCAAAAAGCACTTCACACACTCTT
TGTAGCCGTAACCAGCAGAGCAATCATGCCGCCGAAGTTCGACCCGAGCC
AAGTGGTGGACGTGTACGTCCGCGTGACCGGTGGCGAGGTGGGAGCCGCC
AGTTCCCTCGCCCCAAAGATCGGTCCCCTCGGTCTCTCCCCCAAGAAAAT
CGGAGAGGACATCGCCAAGGAAACCGCCAAGGACTGGAAGGGCTTACGTG
TCACCGTCAAGCTCACCGTCCAGAACCGTCAGGCCAAGGTCGCCGTCGTT
CCCTCCGCCGCCGCCCTGGTCATTAAAGCCCTCAAGGAACCCGAGAGGGA
CAGGAAGAAGACCAAGAACATCAAGCACAACGGCAACATTACCCTCGATG
ACGTCATCGAAATCGCAAAAGTGATGCGGCCCAGGTCGATGGCTAAGGAT
TTGAGTGGCACCGTTAAGGAGATTTTGGGCACATGCGTTTCTGTTGGGTG
TACGGTCGATGGCAAGGACCCTAAGGACCTGCAGCAGGAGATCACTGATG
GTGATGTCGAAATTCCTCTTGATTGAAGACTCTGTTTGTGAGGGGGTCTA
TTTTAGATTTTAATTTTTGTTTTTTATTTCTATATATCAGTGCCTTTTTT
TTTATTATCAGTTTTGGATCTTTACAAGGATTTTGATGATGTCTCCAATT
ATTCGAGCT
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