CF836487
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF836487 vs. ExPASy Swiss-Prot
Match: RL11_METM5 (50S ribosomal protein L11P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl11p PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 4.740e-17 Identity = 55/157 (35.03%), Postives = 89/157 (56.69%), Query Frame = 1 Query: 100 QVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAV---VPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVE 561 QVV++ V +GG+ A L P IGPLG++ ++ + I + KD+ G+ V VK+ V + V +P A+ALV K L ++ + GN+T++ V++IAK+ + +A +L KE++GTCVSVG V+G PK+ Q+ I G + Sbjct: 4 QVVEILV--SGGKATAGPPLGPAIGPLGVNIMQVVQKI-NDMTKDYDGMSVPVKVIVDTDKRTFEVEVGIPPASALVKKELGIATGAQEPKHQVA--GNLTMEQVVKIAKMKQDAMLAYNLKNASKEVIGTCVSVGVNVEGMTPKEAQKAIDAGQFD 155
BLAST of CF836487 vs. ExPASy Swiss-Prot
Match: RL11_KORCO (50S ribosomal protein L11P OS=Korarchaeum cryptofilum (strain OPF8) GN=rpl11p PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.379e-16 Identity = 49/150 (32.67%), Postives = 86/150 (57.33%), Query Frame = 1 Query: 112 VYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAV---VPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDG 552 V V + GG+ L P +G LGL+ +I ++I ++T+ + G+RV V++ V K + P + L+++ LK + +K I GN+ ++ V+ IAK+ S +L VK++LGT +S+G TV+GKDP+++Q+E+ G Sbjct: 6 VRVLIEGGKATPGPPLGPALGGLGLNMGQIVKEINEKTSS-YSGMRVPVEIEVDTETKKFEIRVGTPPTSMLILRELKAEKGSSDASKKI---GNLKMETVVNIAKMKLASSNTPELKQVVKQVLGTALSMGVTVEGKDPREVQREVDSG 151
BLAST of CF836487 vs. ExPASy Swiss-Prot
Match: RL11_METLZ (50S ribosomal protein L11P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpl11p PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.801e-16 Identity = 55/150 (36.67%), Postives = 81/150 (54.00%), Query Frame = 1 Query: 112 VYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVV--PSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGD 555 V V V GG A L P +GPLG++ K + +DI K+TA ++ G+ V V + V +++ V P ALV+K + T N + GN+ L+ VI IAK+ ++ DL KE++GTCVSVG TV+GK K + G+ Sbjct: 5 VEVLVPGGRATAGPPLGPALGPLGINVKAVVDDINKKTA-EFNGMSVPVTVMVDDKKNVTLTVGIPPTTALVMK--EAGVEKGSGTPNTQAVGNLPLEAVIRIAKMKMESMLSYDLKTAAKEVMGTCVSVGVTVEGKTAKQAIAAVNAGE 151
BLAST of CF836487 vs. ExPASy Swiss-Prot
Match: RL11_SULIM (50S ribosomal protein L11P OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rpl11p PE=3 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 5.240e-16 Identity = 54/154 (35.06%), Postives = 83/154 (53.90%), Query Frame = 1 Query: 112 VYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAK--ETAKDWKGLRVTVKLTVQNRQAKVAV---VPSAAALVIK--ALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDG 552 + + V GG V LAP + LGL+ +GE + K E +KG+ V V + V + K + +P+ AL++K + EP D K GN++L+ VI+IA + +P K L VK +LGT S+G TV+ KDPK+L +E+ +G Sbjct: 6 IKIMVEGGNVKPGPPLAPTLSQLGLN---VGEVVKKLNEATSSFKGMSVPVTIEVDSNTKKYEIKVGIPTTTALLLKEAGVSEPSGDPAHKKI----GNLSLEQVIKIAIMKKPGLTTKSLKAAVKSMLGTAKSIGVTVENKDPKELVKEVEEG 152
BLAST of CF836487 vs. ExPASy Swiss-Prot
Match: RL11_NITMS (50S ribosomal protein L11P OS=Nitrosopumilus maritimus (strain SCM1) GN=rpl11p PE=3 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 5.240e-16 Identity = 49/146 (33.56%), Postives = 82/146 (56.16%), Query Frame = 1 Query: 124 VTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAV---VPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDG 552 VTGG A L P +GPLG++ ++ I +T KD++G++V V + V + K + +PSAAAL++K + + + G++T+D V+++A S A L K I+GTC+++G V+GK PK++ EI +G Sbjct: 10 VTGGGASAGPPLGPALGPLGVNIMEVINAINDKT-KDFEGMKVPVTVIVDSDTKKYEIEIGIPSAAALIMK--EAGIQKGSGASGTEWAGDVTMDAVVKVANTKLENSYASSLKSVAKTIVGTCLALGVKVEGKTPKEITAEINEG 152
BLAST of CF836487 vs. ExPASy Swiss-Prot
Match: RL11_META3 (50S ribosomal protein L11P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl11p PE=3 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 5.240e-16 Identity = 54/158 (34.18%), Postives = 93/158 (58.86%), Query Frame = 1 Query: 97 SQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQ--NRQAKVAV-VPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVE 561 ++VVDV V TGG+ A L P +GPLG++ + ++I ++T KD+ G+ V VK+ V +R ++ V +P +AL IK ++ + K I GN++++ ++IAK+ + ++ L KE++GTCVS G V+G P+D Q+ I G+ + Sbjct: 3 TEVVDVLV--TGGKATAGPPLGPAVGPLGINIMNVVKEINEKT-KDYAGMSVPVKVIVNTDDRSFEIEVGIPPTSAL-IKTELGLDKGSTEPKAIVA-GNLSMEQAVKIAKMKKDSMLSFTLKNATKEVIGTCVSTGINVEGMSPRDAQKAIDAGEFD 155
BLAST of CF836487 vs. ExPASy Swiss-Prot
Match: RL11_SULIY (50S ribosomal protein L11P OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rpl11p PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 8.938e-16 Identity = 54/154 (35.06%), Postives = 82/154 (53.25%), Query Frame = 1 Query: 112 VYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAK--ETAKDWKGLRVTVKLTVQNRQAKVAV---VPSAAALVIK--ALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDG 552 + + V GG V LAP + LGL+ +GE + K E +KG+ V V + V + K + +P+ AL++K EP D K GN++L+ VI+IA + +P K L VK +LGT S+G TV+ KDPK+L +E+ +G Sbjct: 6 IKIMVEGGNVKPGPPLAPTLSQLGLN---VGEVVKKLNEATSSFKGMSVPVTIEVDSNTKKYEIKVGIPTTTALLLKEAGASEPSGDPAHKKI----GNLSLEQVIKIAIMKKPGLTTKSLKAAVKSMLGTAKSIGVTVENKDPKELVKEVEEG 152
BLAST of CF836487 vs. ExPASy Swiss-Prot
Match: RL11_SULIL (50S ribosomal protein L11P OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rpl11p PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 8.938e-16 Identity = 54/154 (35.06%), Postives = 82/154 (53.25%), Query Frame = 1 Query: 112 VYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAK--ETAKDWKGLRVTVKLTVQNRQAKVAV---VPSAAALVIK--ALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDG 552 + + V GG V LAP + LGL+ +GE + K E +KG+ V V + V + K + +P+ AL++K EP D K GN++L+ VI+IA + +P K L VK +LGT S+G TV+ KDPK+L +E+ +G Sbjct: 6 IKIMVEGGNVKPGPPLAPTLSQLGLN---VGEVVKKLNEATSSFKGMSVPVTIEVDSNTKKYEIKVGIPTTTALLLKEAGASEPSGDPAHKKI----GNLSLEQVIKIAIMKKPGLTTKSLKAAVKSMLGTAKSIGVTVENKDPKELVKEVEEG 152
BLAST of CF836487 vs. ExPASy Swiss-Prot
Match: RL11_SULIK (50S ribosomal protein L11P OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rpl11p PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 8.938e-16 Identity = 54/154 (35.06%), Postives = 82/154 (53.25%), Query Frame = 1 Query: 112 VYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAK--ETAKDWKGLRVTVKLTVQNRQAKVAV---VPSAAALVIK--ALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDG 552 + + V GG V LAP + LGL+ +GE + K E +KG+ V V + V + K + +P+ AL++K EP D K GN++L+ VI+IA + +P K L VK +LGT S+G TV+ KDPK+L +E+ +G Sbjct: 6 IKIMVEGGNVKPGPPLAPTLSQLGLN---VGEVVKKLNEATSSFKGMSVPVTIEVDSNTKKYEIKVGIPTTTALLLKEAGASEPSGDPAHKKI----GNLSLEQVIKIAIMKKPGLTTKSLKAAVKSMLGTAKSIGVTVENKDPKELVKEVEEG 152
BLAST of CF836487 vs. ExPASy Swiss-Prot
Match: RL11_SULIA (50S ribosomal protein L11P OS=Sulfolobus islandicus (strain M.16.27) GN=rpl11p PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 8.938e-16 Identity = 54/154 (35.06%), Postives = 82/154 (53.25%), Query Frame = 1 Query: 112 VYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAK--ETAKDWKGLRVTVKLTVQNRQAKVAV---VPSAAALVIK--ALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDG 552 + + V GG V LAP + LGL+ +GE + K E +KG+ V V + V + K + +P+ AL++K EP D K GN++L+ VI+IA + +P K L VK +LGT S+G TV+ KDPK+L +E+ +G Sbjct: 6 IKIMVEGGNVKPGPPLAPTLSQLGLN---VGEVVKKLNEATSSFKGMSVPVTIEVDSNTKKYEIKVGIPTTTALLLKEAGASEPSGDPAHKKI----GNLSLEQVIKIAIMKKPGLTTKSLKAAVKSMLGTAKSIGVTVENKDPKELVKEVEEG 152 The following BLAST results are available for this feature:
BLAST of CF836487 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 66
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Sequences
The
following sequences are available for this feature:
EST sequence >CF836487 ID=CF836487; Name=CF836487; organism=Citrus sinensis; type=EST; length=709bpback to top |