CF836487

Overview
NameCF836487
Unique NameCF836487
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836487 vs. ExPASy Swiss-Prot
Match: RL11_METMA (50S ribosomal protein L11P OS=Methanosarcina mazei GN=rpl11p PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.167e-15
Identity = 48/145 (33.10%), Postives = 86/145 (59.31%), Query Frame = 1
Query:  124 VTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQ-AKVAV-VPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDG 552
            V GG+      L P +GPLG++ K++ E I ++T +D+ G++V VK+ V +++  ++ V  P  A+LV+K L   +        +   GN+T+  V +IA++ +   ++ DL  T+KE++GTCV +G  V+G   KD Q+ + +G
Sbjct:    9 VPGGKANPGPPLGPALGPLGVNIKEVVEKINEKT-RDYNGMQVPVKVIVDDKKNVEIEVGTPPTASLVMKELGIQKGSGNAGSEVV--GNLTIPQVAKIARMKKEDVLSYDLKATMKEVMGTCVPMGVNVEGMKAKDCQKALDEG 150          
BLAST of CF836487 vs. ExPASy Swiss-Prot
Match: RL11_METBF (50S ribosomal protein L11P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.525e-15
Identity = 47/145 (32.41%), Postives = 87/145 (60.00%), Query Frame = 1
Query:  124 VTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQ-AKVAV-VPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDG 552
            V GG+      L P +GPLG++ K++ E I ++T +D+ G++V VK+ V +++  ++ V  P  A+L++K L   +        +   GNI++  V +IA++ +   ++ DL  T+KE++GTCV +G TV+G + +D Q+ +  G
Sbjct:    9 VPGGKANPGPPLGPALGPLGVNIKEVVEKINEKT-RDYNGMQVPVKVIVDDKKNVEIEVGTPPTASLIMKELGIQKGSGNAGSEVV--GNISISQVAKIARMKKEDVLSYDLKATMKEVMGTCVPMGVTVEGVEARDSQKALDQG 150          
BLAST of CF836487 vs. ExPASy Swiss-Prot
Match: RL11_SULSO (50S ribosomal protein L11P OS=Sulfolobus solfataricus GN=rpl11p PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.991e-15
Identity = 53/154 (34.42%), Postives = 82/154 (53.25%), Query Frame = 1
Query:  112 VYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAK--ETAKDWKGLRVTVKLTVQNRQAKVAV---VPSAAALVIK--ALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDG 552
            + + V GG V     LAP +  LGL+   +GE + K  E    +KG+ V V + V +   K  +   +P+  AL++K     EP  D    K     GN++L+ VI+IA + +P    K L   +K +LGT  S+G TVD +DPK+L +E+ +G
Sbjct:    6 IKIMVEGGNVKPGPPLAPTLSQLGLN---VGEVVKKLNEATSSFKGMSVPVTIEVDSSTKKYEIKVGIPTTTALLLKEAGASEPSGDPAHKKI----GNLSLEQVIKIAIMKKPGLTTKSLKAALKSMLGTAKSIGLTVDNRDPKELVKEVEEG 152          
BLAST of CF836487 vs. ExPASy Swiss-Prot
Match: RL11_SULAC (50S ribosomal protein L11P OS=Sulfolobus acidocaldarius GN=rpl11p PE=1 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 1.991e-15
Identity = 51/152 (33.55%), Postives = 85/152 (55.92%), Query Frame = 1
Query:  112 VYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAV---VPSAAALVIKAL--KEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDG 552
            + + V GG       L P +  LGL+ +++ + I   TA+ +KG+ V V + + +   K  +   VP+  +L++KA+  +EP  D    K     GN+ L+ + +IA   +P+  AK L+  +K +LGT  S+G TV+GKDPKD+ +EI  G
Sbjct:    6 IKIMVEGGSAKPGPPLGPTLSQLGLNVQEVVKKINDVTAQ-FKGMSVPVTIEIDSSTKKYDIKVGVPTTTSLLLKAINAQEPSGDPAHKKI----GNLDLEQIADIAIKKKPQLSAKTLTAAIKSLLGTARSIGITVEGKDPKDVIKEIDQG 152          
BLAST of CF836487 vs. ExPASy Swiss-Prot
Match: RL11_SULIN (50S ribosomal protein L11P OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.601e-15
Identity = 53/154 (34.42%), Postives = 81/154 (52.60%), Query Frame = 1
Query:  112 VYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAK--ETAKDWKGLRVTVKLTVQNRQAKVAV---VPSAAALVIK--ALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDG 552
            + + V GG V     LAP +  LGL+   +GE + K  E    +KG+ V V + V +   K  +   +P+  AL++K     EP  D    K     GN++L+ VI+I  + +P    K L   VK +LGT  S+G TV+ KDPK+L +E+ +G
Sbjct:    6 IKIMVEGGNVKPGPPLAPTLSQLGLN---VGEVVKKLNEATSSFKGMSVPVTIEVDSNTKKYEIKVGIPTTTALLLKEAGASEPSGDPAHKKI----GNLSLEQVIKIVIMKKPGLTTKSLKAAVKSMLGTAKSIGVTVENKDPKELVKEVEEG 152          
BLAST of CF836487 vs. ExPASy Swiss-Prot
Match: RL11_METB6 (50S ribosomal protein L11P OS=Methanoregula boonei (strain 6A8) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.397e-15
Identity = 52/149 (34.90%), Postives = 83/149 (55.70%), Query Frame = 1
Query:  112 VYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNR-QAKVAV-VPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDG 552
            V V V GG+  A   L P +GPLG++ K + ++I  +TA  + G++V VK+ V ++ Q  V V +P   AL+ K     +   +   N K  GN+  +  + IAK+     ++ +L    KE++GTCVS+G  VDGK PK++  +I  G
Sbjct:    5 VEVLVPGGKATAGPPLGPALGPLGINVKAVVDEINAKTAS-FNGMQVPVKVEVNDKKQFTVTVGIPPTTALIKKEANIEKGSAEP--NAKVAGNLPFEAAVRIAKMKLEGMLSYELKTATKEVVGTCVSMGVNVDGKRPKEVLADIAAG 150          
BLAST of CF836487 vs. ExPASy Swiss-Prot
Match: RL11_METTP (50S ribosomal protein L11P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.567e-15
Identity = 48/149 (32.21%), Postives = 84/149 (56.38%), Query Frame = 1
Query:  124 VTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNR---QAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVE 561
            V+GG+  A   L P +GPLG++   +   I  E  KD  G++V VK+ V++R   + +V   P++A L+ +A  E     KK       G+I++D VI++A++ R   ++ +L   V EI+GTC ++G  +DG   K++Q+ +  G  +
Sbjct:    9 VSGGKATAGPPLGPALGPLGVNVAAVVAKI-NELTKDLNGMQVPVKIIVKSRTEFEIEVGTPPTSALLLKEAGVEKGSGDKKN----FVGDISMDQVIKVAEIKRKNLLSSNLKSAVSEIVGTCGTLGIKIDGLTSKEVQKALASGSYD 152          
BLAST of CF836487 vs. ExPASy Swiss-Prot
Match: RL11_METAC (50S ribosomal protein L11P OS=Methanosarcina acetivorans GN=rpl11p PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.291e-14
Identity = 45/145 (31.03%), Postives = 85/145 (58.62%), Query Frame = 1
Query:  124 VTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQ-AKVAV-VPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDG 552
            V GG+      L P +GPLG++ K++ E I ++T +D+ G++V VK+ V +++  ++ V  P  A+LV+K L   +        +   GN+T+  V ++A++ +   ++ DL   +KE++G+CV +G  V+G   KD Q+ + +G
Sbjct:    9 VPGGKANPGPPLGPALGPLGVNIKEVVEKINEKT-RDYNGMQVPVKVIVDDKKNVEIEVGTPPTASLVMKELGIQKGSGNAGSEVV--GNLTISQVAKVARMKKEDVLSYDLKAAMKEVMGSCVPMGVNVEGMKAKDCQKALDEG 150          
BLAST of CF836487 vs. ExPASy Swiss-Prot
Match: RL11_DESK1 (50S ribosomal protein L11P OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.291e-14
Identity = 51/152 (33.55%), Postives = 86/152 (56.58%), Query Frame = 1
Query:  112 VYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQ--NRQAKVAV-VPSAAALVIK--ALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDG 552
            + V V GG+      L P + P  ++  ++ + I  +  KD++GL V V++T+    ++ +V V +P+  AL++K    K+P  D    K     GNI+ + V+++A + R    AK L   VK +LGT  S+G TVDGKDPK++Q+ + +G
Sbjct:    6 IRVMVEGGKATPGPPLGPTLSPYKVNIPQVVKAI-NDATKDFEGLSVPVEITIDIDTKEFEVRVGIPTTTALLMKEAGAKQPTGDPAHQKI----GNISFEQVVKVAILKRDSLTAKTLRAAVKTVLGTARSIGITVDGKDPKEVQKLVDEG 152          
BLAST of CF836487 vs. ExPASy Swiss-Prot
Match: RL11_METST (50S ribosomal protein L11P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.686e-14
Identity = 47/158 (29.75%), Postives = 88/158 (55.70%), Query Frame = 1
Query:   97 SQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLT--VQNRQAKVAV-VPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVE 561
            SQ +++ V   GG+      L P IGPLG++  ++ E+I K+TA D+ G++V VK+T  +  +  ++++  P   ALV+  L       +    +    + +++   ++A++     +A D     KE++GTCVS+G  V GKD ++ Q++I +GD +
Sbjct:    3 SQTIEILVE--GGKATPGPPLGPAIGPLGINMMQVVEEINKKTA-DFGGMKVPVKITADMDTKDFEISIGTPPTTALVLDELGIESGSHEPGTEVA--ADFSVEQAFKVARMKFDDLLANDYKHATKEVIGTCVSMGINVQGKDGRETQKDIDNGDYD 155          
The following BLAST results are available for this feature:
BLAST of CF836487 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
RL11_METMA1.167e-1533.1050S ribosomal protein L11P OS=Methanosarcina mazei... [more]
RL11_METBF1.525e-1532.4150S ribosomal protein L11P OS=Methanosarcina barke... [more]
RL11_SULSO1.991e-1534.4250S ribosomal protein L11P OS=Sulfolobus solfatari... [more]
RL11_SULAC1.991e-1533.5550S ribosomal protein L11P OS=Sulfolobus acidocald... [more]
RL11_SULIN2.601e-1534.4250S ribosomal protein L11P OS=Sulfolobus islandicu... [more]
RL11_METB63.397e-1534.9050S ribosomal protein L11P OS=Methanoregula boonei... [more]
RL11_METTP7.567e-1532.2150S ribosomal protein L11P OS=Methanosaeta thermop... [more]
RL11_METAC1.291e-1431.0350S ribosomal protein L11P OS=Methanosarcina aceti... [more]
RL11_DESK11.291e-1433.5550S ribosomal protein L11P OS=Desulfurococcus kamc... [more]
RL11_METST1.686e-1429.7550S ribosomal protein L11P OS=Methanosphaera stadt... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_03A20_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa03A20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836487 ID=CF836487; Name=CF836487; organism=Citrus sinensis; type=EST; length=709bp
AGGGCAAATCGCAAAAGACAGGGCAAGCAAAAAGCACTTCACACACTCTT
TGTAGCCGTAACCAGCAGAGCAATCATGCCGCCGAAGTTCGACCCGAGCC
AAGTGGTGGACGTGTACGTCCGCGTGACCGGTGGCGAGGTGGGAGCCGCC
AGTTCCCTCGCCCCAAAGATCGGTCCCCTCGGTCTCTCCCCCAAGAAAAT
CGGAGAGGACATCGCCAAGGAAACCGCCAAGGACTGGAAGGGCTTACGTG
TCACCGTCAAGCTCACCGTCCAGAACCGTCAGGCCAAGGTCGCCGTCGTT
CCCTCCGCCGCCGCCCTGGTCATTAAAGCCCTCAAGGAACCCGAGAGGGA
CAGGAAGAAGACCAAGAACATCAAGCACAACGGCAACATTACCCTCGATG
ACGTCATCGAAATCGCAAAAGTGATGCGGCCCAGGTCGATGGCTAAGGAT
TTGAGTGGCACCGTTAAGGAGATTTTGGGCACATGCGTTTCTGTTGGGTG
TACGGTCGATGGCAAGGACCCTAAGGACCTGCAGCAGGAGATCACTGATG
GTGATGTCGAAATTCCTCTTGATTGAAGACTCTGTTTGTGAGGGGGTCTA
TTTTAGATTTTAATTTTTGTTTTTTATTTCTATATATCAGTGCCTTTTTT
TTTATTATCAGTTTTGGATCTTTACAAGGATTTTGATGATGTCTCCAATT
ATTCGAGCT
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