CF836487

Overview
NameCF836487
Unique NameCF836487
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836487 vs. ExPASy Swiss-Prot
Match: RL11_METS3 (50S ribosomal protein L11P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.875e-14
Identity = 42/150 (28.00%), Postives = 84/150 (56.00%), Query Frame = 1
Query:  112 VYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAV---VPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDG 552
            V + + GG       L P +GP G++  ++ E+I  ++A D+ G++V VK+++     +  +    P   +L+++ L   +   +   +I    ++ +D  ++IA++     +A D    VKE++GTCVS+G +VDGKDP++ Q+++  G
Sbjct:    6 VEILIEGGSATPGPPLGPALGPFGINMMQVVEEINNKSA-DFAGMKVPVKVSIDRDTKEFEIEIGTPPTTSLIMEELGIEKASHEPGADIV--ADLPIDKALKIARMKFDSLLANDYKAGVKEVMGTCVSMGLSVDGKDPREAQKDVDAG 152          
BLAST of CF836487 vs. ExPASy Swiss-Prot
Match: RL11_METBU (50S ribosomal protein L11P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.875e-14
Identity = 43/145 (29.66%), Postives = 84/145 (57.93%), Query Frame = 1
Query:  124 VTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQN-RQAKVAV-VPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDG 552
            + GG+      L P +GPLG++ K + E I ++T KD+ G++V VK+ V + +  ++ V  P  +AL++K L   +   +    +   GN+ +  V +IA++ +   ++  L   +KE++GTCV +G T++  DP++ Q+ + +G
Sbjct:    9 IPGGKANPGPPLGPALGPLGVNIKDVIEKINEKT-KDYNGMQVPVKVIVNDDKSVEIEVGTPPTSALILKELNIEKGSGESGTVVV--GNLEIAQVAKIARMKKDDILSYSLKAAIKEVMGTCVPMGVTIENLDPRECQKAVDEG 150          
BLAST of CF836487 vs. ExPASy Swiss-Prot
Match: RL11_SULTO (50S ribosomal protein L11P OS=Sulfolobus tokodaii GN=rpl11p PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.366e-14
Identity = 52/154 (33.77%), Postives = 80/154 (51.95%), Query Frame = 1
Query:  112 VYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAK--ETAKDWKGLRVTVKLTVQNRQAKVAV---VPSAAALVIKALK--EPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDG 552
            + + V GG V     LAP +  LGL+   +GE + K  +    +KG+ V V L V     K  +   +P+  +L++K     EP  D    K     G+I  +D+I++A + +P+  AK L   VK ILGT  S+G TVD K PK+L + + +G
Sbjct:    6 IKIVVEGGNVKPGPPLAPTLSQLGLN---VGEVVKKINDATSQFKGMSVPVTLEVDTDTKKYEIKVGIPTTTSLLLKFANASEPSGDPAHKKV----GDIKFEDIIQVAIMKKPQITAKTLKAAVKSILGTAHSIGLTVDKKSPKELVKAVDEG 152          
BLAST of CF836487 vs. ExPASy Swiss-Prot
Match: YD417_YEAST (Putative uncharacterized protein YDR417C OS=Saccharomyces cerevisiae GN=YDR417C PE=5 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.153e-13
Identity = 37/70 (52.86%), Postives = 46/70 (65.71%), Query Frame = -3
Query:   66 FWTVSLTVTRKPFQSLAVSLAMSSPIFLGERPRGPIFGARELAAPTSPPVTRTYTSTTWLGSNFGGMIAL 275
            FW  + TVT  P  SL V+LA+SSP F G++P GPIFGA+   APTSPP    Y   T  GSNFGG++ +
Sbjct:   39 FWIFNWTVTLIPLNSL-VALAISSPTFFGDKPNGPIFGAKAAEAPTSPPTALKYKYLTSFGSNFGGILTI 107          
BLAST of CF836487 vs. ExPASy Swiss-Prot
Match: RL11_NANEQ (50S ribosomal protein L11P OS=Nanoarchaeum equitans GN=rpl11p PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.152e-13
Identity = 45/152 (29.61%), Postives = 84/152 (55.26%), Query Frame = 1
Query:  106 VDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTV--QNRQAKVAV-VPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDG 552
            + + + VTGG+      + P + P  ++P K+  +I K T K+++GL V V++ +  + ++ K+ V +P  +AL++KA       ++     +  GN+++ DV+EIAK          L   VK +LGT  + G  V+ KDPK++ +E+ +G
Sbjct:    4 IAIRLLVTGGKATPGPPIGPALSPFKINPGKVVAEINKLT-KEYEGLPVPVEIIINPETKEYKIIVGLPPTSALLMKAAGVTRGPQRTVH--EWVGNVSMKDVVEIAKKKIDSMPTSSLKAAVKSVLGTARATGIKVENKDPKEVTKEVDEG 152          
BLAST of CF836487 vs. ExPASy Swiss-Prot
Match: RL11_HALMA (50S ribosomal protein L11P OS=Haloarcula marismortui GN=rpl11p PE=1 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 6.629e-11
Identity = 42/152 (27.63%), Postives = 81/152 (53.29%), Query Frame = 1
Query:  112 VYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAK-DWKGLRVTVKLTVQNR-QAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVE 561
            + V V GGE      L P++GP  +  + + ++I  +TA  D   + VTVK       + +V V P+A  +  +A  E      +   +    ++++D V +IA+   P  ++ DL+   KE++GTC S+G T++G++P++ ++ I  G+ +
Sbjct:    5 IEVLVPGGEANPGPPLGPELGPTPVDVQAVVQEINDQTAAFDGTEVPVTVKYDDDGSFEIEVGVPPTAELIKDEAGFETGSGEPQEDFV---ADLSVDQVKQIAEQKHPDLLSYDLTNAAKEVVGTCTSLGVTIEGENPREFKERIDAGEYD 153          
The following BLAST results are available for this feature:
BLAST of CF836487 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
RL11_METS32.875e-1428.0050S ribosomal protein L11P OS=Methanobrevibacter s... [more]
RL11_METBU2.875e-1429.6650S ribosomal protein L11P OS=Methanococcoides bur... [more]
RL11_SULTO8.366e-1433.7750S ribosomal protein L11P OS=Sulfolobus tokodaii ... [more]
YD417_YEAST3.153e-1352.86Putative uncharacterized protein YDR417C OS=Saccha... [more]
RL11_NANEQ4.152e-1329.6150S ribosomal protein L11P OS=Nanoarchaeum equitan... [more]
RL11_HALMA6.629e-1127.6350S ribosomal protein L11P OS=Haloarcula marismort... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_03A20_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa03A20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836487 ID=CF836487; Name=CF836487; organism=Citrus sinensis; type=EST; length=709bp
AGGGCAAATCGCAAAAGACAGGGCAAGCAAAAAGCACTTCACACACTCTT
TGTAGCCGTAACCAGCAGAGCAATCATGCCGCCGAAGTTCGACCCGAGCC
AAGTGGTGGACGTGTACGTCCGCGTGACCGGTGGCGAGGTGGGAGCCGCC
AGTTCCCTCGCCCCAAAGATCGGTCCCCTCGGTCTCTCCCCCAAGAAAAT
CGGAGAGGACATCGCCAAGGAAACCGCCAAGGACTGGAAGGGCTTACGTG
TCACCGTCAAGCTCACCGTCCAGAACCGTCAGGCCAAGGTCGCCGTCGTT
CCCTCCGCCGCCGCCCTGGTCATTAAAGCCCTCAAGGAACCCGAGAGGGA
CAGGAAGAAGACCAAGAACATCAAGCACAACGGCAACATTACCCTCGATG
ACGTCATCGAAATCGCAAAAGTGATGCGGCCCAGGTCGATGGCTAAGGAT
TTGAGTGGCACCGTTAAGGAGATTTTGGGCACATGCGTTTCTGTTGGGTG
TACGGTCGATGGCAAGGACCCTAAGGACCTGCAGCAGGAGATCACTGATG
GTGATGTCGAAATTCCTCTTGATTGAAGACTCTGTTTGTGAGGGGGTCTA
TTTTAGATTTTAATTTTTGTTTTTTATTTCTATATATCAGTGCCTTTTTT
TTTATTATCAGTTTTGGATCTTTACAAGGATTTTGATGATGTCTCCAATT
ATTCGAGCT
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